Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35953 * 116.99946 * 2 1 4 4 C 1.38075 * 119.99960 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83882 * 180.02562 * 4 3 2 6 6 C 1.46966 * 120.08072 * 180.02562 * 5 4 3 7 7 C 1.35027 * 119.99814 * 226.55749 * 6 5 4 8 8 C 1.46250 * 120.00145 * 10.70332 * 7 6 5 9 9 O 1.21726 * 119.99993 * 6.97231 * 8 7 6 10 10 N 1.34777 * 120.00178 * 186.97615 * 8 7 6 11 11 C 1.46500 * 120.00051 * 359.97438 * 10 8 7 12 12 C 1.46499 * 120.00262 * 179.97438 * 10 8 7 13 13 H 1.08999 * 109.47009 * 0.02562 * 12 10 8 14 14 C 1.53005 * 109.47145 * 119.99786 * 12 10 8 15 15 C 1.52993 * 109.47306 * 239.99902 * 12 10 8 16 16 C 1.47196 * 109.47180 * 64.99820 * 15 12 10 17 17 N 8.12641 * 126.17969 * 348.34095 * 2 1 3 18 18 C 1.40033 * 119.84043 * 359.70366 * 5 4 3 19 19 C 1.37641 * 120.00124 * 0.57293 * 18 5 4 20 20 C 1.39061 * 120.16384 * 359.44923 * 19 18 5 21 21 O 1.35605 * 119.92747 * 180.27742 * 20 19 18 22 22 C 1.34767 * 116.99776 * 354.19211 * 21 20 19 23 23 H 1.08000 * 120.00090 * 5.06470 * 22 21 20 24 24 C 1.38705 * 119.99963 * 185.07070 * 22 21 20 25 25 N 1.31521 * 120.00093 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99889 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46959 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47007 * 120.00149 * 26 24 22 29 29 H 1.48502 * 109.47116 * 239.99918 * 26 24 22 30 30 H 1.09008 * 109.47326 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47351 * 300.00051 * 1 2 3 32 32 H 1.08997 * 109.47285 * 60.00153 * 1 2 3 33 33 H 1.07993 * 120.08050 * 0.04523 * 4 3 2 34 34 H 1.07994 * 120.00167 * 46.55184 * 6 5 4 35 35 H 1.08000 * 119.99912 * 190.69425 * 7 6 5 36 36 H 1.08997 * 109.46908 * 90.00039 * 11 10 8 37 37 H 1.08999 * 109.47247 * 210.00473 * 11 10 8 38 38 H 1.09001 * 109.47058 * 330.00177 * 11 10 8 39 39 H 1.08999 * 109.46876 * 60.00274 * 14 12 10 40 40 H 1.09000 * 109.46851 * 180.02562 * 14 12 10 41 41 H 1.08998 * 109.46854 * 300.00057 * 14 12 10 42 42 H 1.09002 * 109.47516 * 184.99888 * 15 12 10 43 43 H 1.08999 * 109.47073 * 304.99861 * 15 12 10 44 44 H 1.08009 * 120.00016 * 180.29568 * 18 5 4 45 45 H 1.08005 * 119.91996 * 179.72511 * 19 18 5 46 46 H 0.96995 * 119.99910 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3693 -0.0005 5 6 1.9331 3.6148 -0.0011 6 6 1.1378 4.8507 -0.0011 7 6 1.4484 5.8533 -0.8505 8 6 2.4158 5.6289 -1.9242 9 8 2.8453 4.5091 -2.1322 10 7 2.8319 6.6619 -2.6832 11 6 2.3147 8.0096 -2.4332 12 6 3.8013 6.4373 -3.7583 13 1 4.0677 5.3809 -3.7924 14 6 3.1842 6.8504 -5.0961 15 6 5.0563 7.2720 -3.4961 16 6 5.7164 6.7939 -2.2704 17 7 6.2261 6.4241 -1.3256 18 6 3.3319 3.6802 0.0052 19 6 4.0751 2.5218 0.0000 20 6 3.4405 1.2844 0.0000 21 8 4.1775 0.1461 0.0005 22 6 5.5128 0.2818 -0.1205 23 1 5.9570 1.2662 -0.1299 24 6 6.3168 -0.8429 -0.2331 25 7 5.7760 -2.0417 -0.2213 26 14 8.1677 -0.6547 -0.4016 27 1 8.5220 0.7873 -0.3873 28 1 8.8401 -1.3405 0.7311 29 1 8.6124 -1.2616 -1.6820 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2156 2.3143 -0.0002 34 1 0.3050 4.9569 0.6782 35 1 0.9824 6.8209 -0.7371 36 1 2.9565 8.5172 -1.7131 37 1 2.3000 8.5721 -3.3667 38 1 1.3028 7.9421 -2.0337 39 1 2.9175 7.9068 -5.0623 40 1 3.9054 6.6828 -5.8960 41 1 2.2901 6.2557 -5.2829 42 1 5.7405 7.1742 -4.3390 43 1 4.7775 8.3187 -3.3741 44 1 3.8276 4.6399 0.0096 45 1 5.1539 2.5738 0.0003 46 1 6.3383 -2.8281 -0.2997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255574806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = -4.029047 kcal Electronic energy + Delta-G solvation = -30288.415697 eV Core-core repulsion = 26146.298499 eV Total energy + Delta-G solvation = -4142.117198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18759 -39.34288 -37.44107 -37.39262 -36.20558 -35.51129 -33.25874 -32.45736 -31.89051 -29.39919 -28.55504 -28.35915 -27.06193 -26.39848 -25.31503 -23.92545 -21.73807 -21.42364 -20.22943 -18.58510 -18.00064 -17.90473 -17.59425 -16.98293 -16.14285 -15.85486 -15.48576 -15.08889 -15.01564 -14.50291 -14.37553 -14.18378 -13.81663 -13.79292 -13.48118 -13.38952 -13.33718 -13.26011 -12.92731 -12.76790 -12.58245 -12.42458 -12.25468 -12.12879 -11.82972 -11.70072 -11.61516 -11.34863 -11.30860 -11.10391 -10.98240 -10.87354 -10.56093 -10.40450 -10.26496 -9.46153 -9.26234 -9.12584 -8.71542 -8.63222 -7.67822 -6.60983 -6.37726 -3.90029 1.22759 2.37282 2.67000 2.78376 2.80582 2.98763 3.18816 3.20061 3.26338 3.57693 3.89845 4.03352 4.15264 4.51616 4.67247 4.78625 4.81319 4.93306 4.99608 5.07656 5.14592 5.17420 5.19019 5.27355 5.29999 5.39288 5.49053 5.57584 5.59589 5.65265 5.77000 5.81328 5.89279 5.91260 5.94545 6.22130 6.33589 6.46387 6.50996 6.62529 6.76738 7.08133 7.21536 7.35359 7.43170 7.53812 7.61204 7.76180 8.04701 8.32190 8.47118 9.07076 9.79466 10.79478 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.003961 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.136496 B = 7067.452540 C = 9273.432190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.136 4.136 5 C -0.155 4.155 6 C 0.025 3.975 7 C -0.262 4.262 8 C 0.542 3.458 9 O -0.503 6.503 10 N -0.621 5.621 11 C 0.077 3.923 12 C 0.138 3.862 13 H 0.112 0.888 14 C -0.158 4.158 15 C -0.035 4.035 16 C 0.196 3.804 17 N -0.419 5.419 18 C -0.012 4.012 19 C -0.218 4.218 20 C 0.151 3.849 21 O -0.159 6.159 22 C -0.386 4.386 23 H 0.093 0.907 24 C 0.040 3.960 25 N -0.855 5.855 26 Si 0.939 3.061 27 H -0.266 1.266 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 22.010 -7.687 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.004 4.004 4 C -0.155 4.155 5 C -0.157 4.157 6 C 0.005 3.995 7 C -0.283 4.283 8 C 0.333 3.667 9 O -0.378 6.378 10 N -0.357 5.357 11 C -0.066 4.066 12 C 0.033 3.967 13 H 0.130 0.870 14 C -0.216 4.216 15 C -0.076 4.076 16 C -0.122 4.122 17 N -0.095 5.095 18 C -0.030 4.030 19 C -0.237 4.237 20 C 0.096 3.904 21 O -0.061 6.061 22 C -0.463 4.463 23 H 0.111 0.889 24 C -0.165 4.165 25 N -0.489 5.489 26 Si 0.764 3.236 27 H -0.190 1.190 28 H -0.201 1.201 29 H -0.201 1.201 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.147 0.853 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.435 20.140 -6.374 22.747 hybrid contribution 0.407 0.754 -0.519 1.001 sum -8.028 20.894 -6.894 23.421 Atomic orbital electron populations 1.22846 0.80717 1.02687 1.00061 1.86222 1.19118 1.26501 1.90085 1.17912 0.89303 0.84320 1.08829 1.20628 0.97906 0.90905 1.06102 1.18015 0.92792 0.91230 1.13615 1.22335 0.93473 0.91431 0.92215 1.22731 1.05476 1.00443 0.99679 1.18530 0.81498 0.84177 0.82482 1.91017 1.55704 1.22000 1.69107 1.47892 1.44851 1.08502 1.34503 1.21766 0.99689 0.83646 1.01526 1.20961 0.86532 1.02150 0.87046 0.86988 1.22108 1.02014 1.01916 0.95584 1.19714 0.96551 1.01111 0.90185 1.28942 0.94019 0.94342 0.94937 1.81261 1.09315 1.07540 1.11418 1.20467 0.91851 0.96503 0.94224 1.20721 1.00298 0.90874 1.11842 1.18795 0.88239 0.87545 0.95801 1.83984 1.19489 1.25680 1.76953 1.21475 0.78675 0.94820 1.51282 0.88946 1.25302 1.00402 0.94214 0.96578 1.70064 1.36021 0.97582 1.45210 0.85671 0.80739 0.78943 0.78281 1.19007 1.20076 1.20068 0.89262 0.93778 0.93763 0.86561 0.86028 0.85790 0.93073 0.91043 0.90701 0.91990 0.90958 0.91514 0.86447 0.87535 0.88506 0.85253 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.30 -7.16 10.28 -34.21 -0.35 -7.51 16 3 C 0.04 0.98 6.70 -39.12 -0.26 0.72 16 4 C -0.14 -2.72 8.77 -38.99 -0.34 -3.06 16 5 C -0.16 -2.99 4.41 -105.04 -0.46 -3.45 16 6 C 0.03 0.36 9.78 -37.19 -0.36 0.00 16 7 C -0.26 -3.35 9.15 -37.51 -0.34 -3.69 16 8 C 0.54 7.97 6.75 -13.04 -0.09 7.88 16 9 O -0.50 -9.87 11.68 5.17 0.06 -9.81 16 10 N -0.62 -6.38 2.46 -175.64 -0.43 -6.81 16 11 C 0.08 0.47 9.16 59.85 0.55 1.02 16 12 C 0.14 1.23 2.62 -67.93 -0.18 1.06 16 13 H 0.11 1.41 6.89 -51.93 -0.36 1.06 16 14 C -0.16 -0.92 9.17 37.16 0.34 -0.57 16 15 C -0.03 -0.24 5.14 -29.52 -0.15 -0.39 16 16 C 0.20 2.46 15.14 -20.78 -0.31 2.14 16 17 N -0.42 -7.02 18.53 42.13 0.78 -6.24 16 18 C -0.01 -0.26 6.69 -39.13 -0.26 -0.52 16 19 C -0.22 -5.42 9.14 -39.49 -0.36 -5.79 16 20 C 0.15 4.10 6.67 -38.76 -0.26 3.84 16 21 O -0.16 -4.94 9.52 -13.94 -0.13 -5.07 16 22 C -0.39 -11.62 9.48 30.90 0.29 -11.33 16 23 H 0.09 2.63 5.19 -52.49 -0.27 2.36 16 24 C 0.04 1.16 5.49 -17.51 -0.10 1.07 16 25 N -0.85 -26.31 13.67 55.48 0.76 -25.56 16 26 Si 0.94 21.87 29.55 -169.99 -5.02 16.84 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.04 0.62 7.66 -51.92 -0.40 0.23 16 32 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.12 1.92 6.28 -52.49 -0.33 1.59 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.11 6.14 -52.49 -0.32 0.79 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.26 6.43 -51.93 -0.33 -0.08 16 38 H 0.07 0.41 6.02 -51.93 -0.31 0.10 16 39 H 0.06 0.23 6.66 -51.93 -0.35 -0.11 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.11 0.42 7.51 -51.93 -0.39 0.03 16 44 H 0.10 2.04 7.31 -52.48 -0.38 1.66 16 45 H 0.13 3.30 5.62 -52.48 -0.29 3.01 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -39.82 387.54 -5.62 -45.44 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.81 Total: 2.45 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.31 Total: -9.56 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 1.11 Total: -38.61 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.42 Total: -22.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.82 -5.62 -45.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255574806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.408 kcal (2) G-P(sol) polarization free energy of solvation -39.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds