Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35953 * 116.99946 * 2 1 4 4 C 1.38075 * 119.99960 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83882 * 180.02562 * 4 3 2 6 6 C 1.46966 * 120.08072 * 180.02562 * 5 4 3 7 7 C 1.35027 * 119.99814 * 226.55749 * 6 5 4 8 8 C 1.46250 * 120.00145 * 10.70332 * 7 6 5 9 9 O 1.21726 * 119.99993 * 6.97231 * 8 7 6 10 10 N 1.34777 * 120.00178 * 186.97615 * 8 7 6 11 11 C 1.46500 * 120.00051 * 359.97438 * 10 8 7 12 12 C 1.46499 * 120.00262 * 179.97438 * 10 8 7 13 13 H 1.08999 * 109.47009 * 0.02562 * 12 10 8 14 14 C 1.53005 * 109.47145 * 119.99786 * 12 10 8 15 15 C 1.52993 * 109.47306 * 239.99902 * 12 10 8 16 16 C 1.47196 * 109.47180 * 64.99820 * 15 12 10 17 17 N 8.12641 * 126.17969 * 348.34095 * 2 1 3 18 18 C 1.40033 * 119.84043 * 359.70366 * 5 4 3 19 19 C 1.37641 * 120.00124 * 0.57293 * 18 5 4 20 20 C 1.39061 * 120.16384 * 359.44923 * 19 18 5 21 21 O 1.35605 * 119.92747 * 180.27742 * 20 19 18 22 22 C 1.34767 * 116.99776 * 354.19211 * 21 20 19 23 23 H 1.08000 * 120.00090 * 5.06470 * 22 21 20 24 24 C 1.38705 * 119.99963 * 185.07070 * 22 21 20 25 25 N 1.31521 * 120.00093 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99889 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46959 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47007 * 120.00149 * 26 24 22 29 29 H 1.48502 * 109.47116 * 239.99918 * 26 24 22 30 30 H 1.09008 * 109.47326 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47351 * 300.00051 * 1 2 3 32 32 H 1.08997 * 109.47285 * 60.00153 * 1 2 3 33 33 H 1.07993 * 120.08050 * 0.04523 * 4 3 2 34 34 H 1.07994 * 120.00167 * 46.55184 * 6 5 4 35 35 H 1.08000 * 119.99912 * 190.69425 * 7 6 5 36 36 H 1.08997 * 109.46908 * 90.00039 * 11 10 8 37 37 H 1.08999 * 109.47247 * 210.00473 * 11 10 8 38 38 H 1.09001 * 109.47058 * 330.00177 * 11 10 8 39 39 H 1.08999 * 109.46876 * 60.00274 * 14 12 10 40 40 H 1.09000 * 109.46851 * 180.02562 * 14 12 10 41 41 H 1.08998 * 109.46854 * 300.00057 * 14 12 10 42 42 H 1.09002 * 109.47516 * 184.99888 * 15 12 10 43 43 H 1.08999 * 109.47073 * 304.99861 * 15 12 10 44 44 H 1.08009 * 120.00016 * 180.29568 * 18 5 4 45 45 H 1.08005 * 119.91996 * 179.72511 * 19 18 5 46 46 H 0.96995 * 119.99910 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3693 -0.0005 5 6 1.9331 3.6148 -0.0011 6 6 1.1378 4.8507 -0.0011 7 6 1.4484 5.8533 -0.8505 8 6 2.4158 5.6289 -1.9242 9 8 2.8453 4.5091 -2.1322 10 7 2.8319 6.6619 -2.6832 11 6 2.3147 8.0096 -2.4332 12 6 3.8013 6.4373 -3.7583 13 1 4.0677 5.3809 -3.7924 14 6 3.1842 6.8504 -5.0961 15 6 5.0563 7.2720 -3.4961 16 6 5.7164 6.7939 -2.2704 17 7 6.2261 6.4241 -1.3256 18 6 3.3319 3.6802 0.0052 19 6 4.0751 2.5218 0.0000 20 6 3.4405 1.2844 0.0000 21 8 4.1775 0.1461 0.0005 22 6 5.5128 0.2818 -0.1205 23 1 5.9570 1.2662 -0.1299 24 6 6.3168 -0.8429 -0.2331 25 7 5.7760 -2.0417 -0.2213 26 14 8.1677 -0.6547 -0.4016 27 1 8.5220 0.7873 -0.3873 28 1 8.8401 -1.3405 0.7311 29 1 8.6124 -1.2616 -1.6820 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2156 2.3143 -0.0002 34 1 0.3050 4.9569 0.6782 35 1 0.9824 6.8209 -0.7371 36 1 2.9565 8.5172 -1.7131 37 1 2.3000 8.5721 -3.3667 38 1 1.3028 7.9421 -2.0337 39 1 2.9175 7.9068 -5.0623 40 1 3.9054 6.6828 -5.8960 41 1 2.2901 6.2557 -5.2829 42 1 5.7405 7.1742 -4.3390 43 1 4.7775 8.3187 -3.3741 44 1 3.8276 4.6399 0.0096 45 1 5.1539 2.5738 0.0003 46 1 6.3383 -2.8281 -0.2997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255574806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = -32.840198 kcal Electronic energy + Delta-G solvation = -30289.665042 eV Core-core repulsion = 26146.298499 eV Total energy + Delta-G solvation = -4143.366543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46500 -40.88105 -39.27307 -38.56087 -37.62634 -36.72651 -34.64386 -34.12469 -33.14540 -31.16537 -30.02111 -29.06806 -27.89199 -27.65696 -27.37253 -25.16059 -23.26482 -23.07354 -21.32314 -19.92708 -19.81263 -19.18498 -18.62306 -18.30322 -17.76076 -17.07842 -16.71145 -16.61551 -16.46223 -16.26246 -15.59566 -15.35704 -15.31844 -15.24394 -15.03650 -14.66854 -14.59819 -14.27187 -14.03554 -13.98768 -13.74040 -13.56240 -13.38449 -13.20901 -12.98210 -12.93896 -12.82514 -12.76869 -12.53357 -12.50187 -12.41896 -12.22756 -12.02783 -11.80174 -11.72931 -11.41822 -10.92861 -10.58574 -10.30575 -9.65435 -9.33393 -8.52096 -8.41539 -6.15648 -0.06454 0.58411 1.02314 1.25328 1.35960 1.44638 1.81309 1.86342 2.11819 2.16933 2.46362 2.57624 2.79244 3.10032 3.12071 3.40947 3.76754 3.86751 3.98112 4.05196 4.16564 4.25691 4.32167 4.34441 4.39682 4.42957 4.52024 4.56122 4.69298 4.69804 4.71617 4.76439 4.84761 4.93277 4.95997 5.03340 5.05153 5.12235 5.18900 5.31303 5.43346 5.47938 5.53524 5.72439 5.80674 5.91927 6.00760 6.53071 6.65249 6.67074 6.92105 7.40694 7.75299 8.71888 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.003961 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.136496 B = 7067.452540 C = 9273.432190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.034 3.966 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.007 4.007 7 C -0.224 4.224 8 C 0.520 3.480 9 O -0.568 6.568 10 N -0.613 5.613 11 C 0.064 3.936 12 C 0.132 3.868 13 H 0.062 0.938 14 C -0.147 4.147 15 C -0.031 4.031 16 C 0.222 3.778 17 N -0.507 5.507 18 C -0.022 4.022 19 C -0.223 4.223 20 C 0.095 3.905 21 O -0.218 6.218 22 C -0.415 4.415 23 H 0.088 0.912 24 C -0.019 4.019 25 N -0.914 5.914 26 Si 1.017 2.983 27 H -0.264 1.264 28 H -0.259 1.259 29 H -0.261 1.261 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 27.743 -9.205 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C -0.011 4.011 4 C -0.153 4.153 5 C -0.114 4.114 6 C -0.026 4.026 7 C -0.244 4.244 8 C 0.312 3.688 9 O -0.448 6.448 10 N -0.346 5.346 11 C -0.077 4.077 12 C 0.027 3.973 13 H 0.081 0.919 14 C -0.204 4.204 15 C -0.071 4.071 16 C -0.095 4.095 17 N -0.185 5.185 18 C -0.041 4.041 19 C -0.242 4.242 20 C 0.044 3.956 21 O -0.124 6.124 22 C -0.492 4.492 23 H 0.105 0.895 24 C -0.217 4.217 25 N -0.551 5.551 26 Si 0.835 3.165 27 H -0.188 1.188 28 H -0.183 1.183 29 H -0.185 1.185 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.196 0.804 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.432 25.995 -7.911 29.479 hybrid contribution 0.908 -0.490 -0.218 1.055 sum -10.524 25.505 -8.129 28.763 Atomic orbital electron populations 1.23266 0.77051 1.04903 1.02071 1.86166 1.23075 1.26855 1.90134 1.18246 0.88606 0.86007 1.08192 1.21137 0.99943 0.89560 1.04646 1.18646 0.92164 0.93672 1.06888 1.22611 0.95266 0.89228 0.95467 1.23309 1.02415 1.01676 0.96998 1.19159 0.81877 0.84322 0.83488 1.91022 1.58105 1.24824 1.70828 1.48024 1.43873 1.09368 1.33333 1.22174 1.00369 0.81187 1.03992 1.21061 0.87531 1.00093 0.88586 0.91922 1.22042 1.01329 1.03502 0.93564 1.20185 0.95634 1.02668 0.88595 1.30112 0.92278 0.92160 0.94958 1.81291 1.12244 1.10394 1.14578 1.20481 0.93282 0.95059 0.95245 1.20696 0.99482 0.91918 1.12117 1.19389 0.89959 0.87396 0.98856 1.83941 1.19736 1.27548 1.81194 1.21786 0.79406 0.95203 1.52761 0.89482 1.26555 1.05842 0.93446 0.95827 1.70194 1.38194 0.98537 1.48217 0.84589 0.73654 0.79003 0.79204 1.18806 1.18309 1.18518 0.87285 0.91158 0.91945 0.81916 0.80930 0.80380 0.92154 0.87454 0.89274 0.88501 0.89317 0.93434 0.82891 0.82890 0.88300 0.87816 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 16 2 O -0.35 -17.05 10.28 -79.05 -0.81 -17.86 16 3 C 0.03 1.73 6.70 22.57 0.15 1.88 16 4 C -0.13 -5.23 8.77 22.65 0.20 -5.03 16 5 C -0.11 -4.21 4.41 -20.13 -0.09 -4.30 16 6 C -0.01 -0.16 9.78 23.82 0.23 0.08 16 7 C -0.22 -4.58 9.15 23.61 0.22 -4.37 16 8 C 0.52 14.07 6.75 86.32 0.58 14.65 16 9 O -0.57 -22.60 11.68 -4.43 -0.05 -22.66 16 10 N -0.61 -10.34 2.46 -827.80 -2.04 -12.37 16 11 C 0.06 0.37 9.16 127.77 1.17 1.54 16 12 C 0.13 2.02 2.62 44.99 0.12 2.14 16 13 H 0.06 1.63 6.89 -2.39 -0.02 1.61 16 14 C -0.15 -1.08 9.17 71.98 0.66 -0.42 16 15 C -0.03 -0.30 5.14 28.79 0.15 -0.15 16 16 C 0.22 5.38 15.14 89.45 1.35 6.73 16 17 N -0.51 -17.63 18.53 20.00 0.37 -17.26 16 18 C -0.02 -1.00 6.69 22.56 0.15 -0.85 16 19 C -0.22 -12.18 9.14 22.33 0.20 -11.98 16 20 C 0.09 5.63 6.67 22.80 0.15 5.78 16 21 O -0.22 -15.05 9.52 -6.54 -0.06 -15.11 16 22 C -0.42 -27.70 9.48 67.93 0.64 -27.05 16 23 H 0.09 5.60 5.19 -2.91 -0.02 5.58 16 24 C -0.02 -1.19 5.49 84.85 0.47 -0.72 16 25 N -0.91 -60.88 13.67 21.62 0.30 -60.58 16 26 Si 1.02 48.22 29.55 68.60 2.03 50.25 16 27 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 31 H 0.07 1.82 7.66 -2.38 -0.02 1.80 16 32 H 0.06 1.71 7.66 -2.39 -0.02 1.69 16 33 H 0.16 4.74 6.28 -2.91 -0.02 4.72 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.18 1.77 6.14 -2.91 -0.02 1.75 16 36 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 37 H 0.11 -0.07 6.43 -2.39 -0.02 -0.08 16 38 H 0.09 0.31 6.02 -2.39 -0.01 0.30 16 39 H 0.10 0.07 6.66 -2.39 -0.02 0.05 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.15 0.20 7.51 -2.39 -0.02 0.18 16 44 H 0.10 4.35 7.31 -2.91 -0.02 4.33 16 45 H 0.10 6.02 5.62 -2.91 -0.02 6.01 16 46 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -106.27 387.54 8.23 -98.04 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.02 Total: 17.85 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 7.47 Total: -20.30 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -1.37 Total: -90.22 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.93 Total: -55.63 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -106.27 8.23 -98.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255574806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.198 kcal (2) G-P(sol) polarization free energy of solvation -106.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds