Wall clock time and date at job start Wed Apr 1 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.26376 * 2 1 4 4 C 1.52888 * 109.26782 * 119.46836 * 2 1 3 5 5 C 1.52202 * 109.96403 * 182.10364 * 4 2 1 6 6 N 1.46515 * 108.12810 * 309.79787 * 5 4 2 7 7 C 1.33521 * 129.69804 * 232.24295 * 6 5 4 8 8 O 1.21532 * 124.00653 * 349.24141 * 7 6 5 9 9 N 1.34161 * 111.99155 * 169.21569 * 7 6 5 10 10 C 1.46503 * 124.17845 * 183.44434 * 9 7 6 11 11 C 1.50701 * 109.47448 * 90.01898 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38880 * 119.93215 * 0.52061 * 13 12 11 15 15 O 1.35751 * 120.06991 * 179.72564 * 14 13 12 16 16 C 1.34830 * 116.99835 * 174.48953 * 15 14 13 17 17 H 1.08005 * 120.00046 * 5.05655 * 16 15 14 18 18 C 1.38655 * 120.00076 * 185.05845 * 16 15 14 19 19 N 1.31558 * 120.00101 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99891 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47304 * 89.99841 * 20 18 16 22 22 H 1.48500 * 109.47356 * 210.00169 * 20 18 16 23 23 H 1.48507 * 109.47412 * 330.00083 * 20 18 16 24 24 C 1.38878 * 119.86025 * 359.75299 * 14 13 12 25 25 C 1.38102 * 119.93360 * 359.97438 * 24 14 13 26 26 C 1.35002 * 111.64554 * 3.70117 * 9 7 6 27 27 O 1.21237 * 127.18889 * 182.33752 * 26 9 7 28 28 C 1.47894 * 123.29857 * 49.01754 * 6 5 4 29 29 H 1.08995 * 111.64672 * 71.63272 * 28 6 5 30 30 C 1.53164 * 107.16158 * 309.30698 * 28 6 5 31 31 H 1.09003 * 109.47259 * 179.50054 * 1 2 3 32 32 H 1.09006 * 109.46413 * 299.49788 * 1 2 3 33 33 H 1.09000 * 109.47191 * 59.49561 * 1 2 3 34 34 H 1.09001 * 109.43027 * 302.64536 * 4 2 1 35 35 H 1.08995 * 109.43150 * 62.50544 * 4 2 1 36 36 H 1.08998 * 110.47547 * 189.51860 * 5 4 2 37 37 H 1.09010 * 108.51768 * 68.93781 * 5 4 2 38 38 H 1.08992 * 109.46850 * 330.01552 * 10 9 7 39 39 H 1.09001 * 109.46885 * 210.02169 * 10 9 7 40 40 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 41 41 H 1.08005 * 120.03360 * 180.26705 * 13 12 11 42 42 H 0.97000 * 119.99761 * 179.97438 * 19 18 16 43 43 H 1.07999 * 120.03611 * 179.97438 * 24 14 13 44 44 H 1.07997 * 119.96808 * 180.02562 * 25 24 14 45 45 H 1.09006 * 109.59939 * 172.93301 * 30 28 6 46 46 H 1.09002 * 109.60565 * 293.24605 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8896 1.0290 0.0000 4 6 2.0345 -0.7100 1.2565 5 6 3.5555 -0.6735 1.2987 6 7 4.0588 -1.1389 0.0038 7 6 4.9531 -2.0915 -0.2713 8 8 5.6548 -2.6267 0.5643 9 7 4.9847 -2.3883 -1.5792 10 6 5.8154 -3.4440 -2.1638 11 6 5.0451 -4.7392 -2.1784 12 6 5.1237 -5.6012 -1.0997 13 6 4.4146 -6.7861 -1.1077 14 6 3.6303 -7.1169 -2.2051 15 8 2.9364 -8.2836 -2.2182 16 6 2.1069 -8.4907 -3.2608 17 1 2.0784 -7.7838 -4.0769 18 6 1.2903 -9.6110 -3.2852 19 7 0.4806 -9.8128 -4.3022 20 14 1.3400 -10.8338 -1.8740 21 1 0.3478 -10.4394 -0.8420 22 1 1.0129 -12.1902 -2.3824 23 1 2.6991 -10.8441 -1.2755 24 6 3.5578 -6.2519 -3.2892 25 6 4.2649 -5.0657 -3.2728 26 6 4.1607 -1.5902 -2.2910 27 8 3.9422 -1.6388 -3.4826 28 6 3.5643 -0.6249 -1.2918 29 1 3.9019 0.3951 -1.4750 30 6 2.0355 -0.7120 -1.2586 31 1 -0.3634 -1.0276 -0.0090 32 1 -0.3632 0.5061 0.8945 33 1 -0.3633 0.5216 -0.8854 34 1 1.6308 -0.2148 2.1396 35 1 1.7063 -1.7492 1.2423 36 1 3.9304 -1.3166 2.0950 37 1 3.8725 0.3550 1.4716 38 1 6.7200 -3.5660 -1.5682 39 1 6.0859 -3.1706 -3.1837 40 1 5.7373 -5.3453 -0.2485 41 1 4.4731 -7.4568 -0.2632 42 1 -0.0904 -10.5967 -4.3194 43 1 2.9491 -6.5065 -4.1442 44 1 4.2086 -4.3925 -4.1153 45 1 1.6224 -0.2277 -2.1435 46 1 1.7291 -1.7579 -1.2378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277748592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:14 Heat of formation + Delta-G solvation = -44.270131 kcal Electronic energy + Delta-G solvation = -30455.787097 eV Core-core repulsion = 26311.924915 eV Total energy + Delta-G solvation = -4143.862182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60485 -39.28097 -38.65871 -38.32452 -36.86933 -35.72566 -34.22410 -32.50578 -32.12499 -30.35784 -30.17352 -28.62701 -26.52933 -25.15957 -24.69157 -23.62195 -22.36931 -21.83439 -21.25337 -20.42486 -19.74534 -17.92785 -17.50516 -17.39369 -17.06109 -16.58644 -15.71193 -15.51915 -15.04302 -14.96824 -14.87295 -14.74394 -14.14005 -14.07093 -13.99303 -13.86755 -13.81630 -13.59440 -13.41632 -12.77939 -12.64187 -12.36616 -12.24936 -12.24629 -11.93825 -11.81013 -11.57646 -11.51492 -11.30233 -11.20449 -10.94253 -10.83674 -10.71494 -10.64061 -10.19662 -10.10709 -9.66819 -9.42197 -9.14386 -8.91432 -8.29155 -7.42552 -6.46143 -4.12769 1.59306 1.75946 2.11976 2.32621 2.92797 2.99524 3.19570 3.23150 3.37899 3.83376 4.16243 4.20118 4.29686 4.45152 4.48569 4.56683 4.68559 4.79100 4.81117 5.01120 5.06073 5.11941 5.15710 5.25795 5.28452 5.33447 5.41281 5.46477 5.52556 5.54995 5.63284 5.68240 5.76149 5.78213 5.83286 5.88210 5.99707 6.11442 6.26855 6.37661 6.54543 6.76279 6.98983 7.07428 7.21430 7.26716 7.34409 7.56764 7.76003 7.98938 8.06709 8.88645 9.50079 10.61154 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.003050 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.495961 B = 9177.187080 C = 9849.175016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.153 3.847 6 N -0.624 5.624 7 C 0.708 3.292 8 O -0.542 6.542 9 N -0.571 5.571 10 C 0.176 3.824 11 C -0.214 4.214 12 C -0.049 4.049 13 C -0.197 4.197 14 C 0.169 3.831 15 O -0.214 6.214 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.876 5.876 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.226 4.226 25 C -0.048 4.048 26 C 0.526 3.474 27 O -0.465 6.465 28 C 0.088 3.912 29 H 0.127 0.873 30 C -0.112 4.112 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.280 0.720 43 H 0.134 0.866 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 22.640 9.439 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.032 3.968 6 N -0.363 5.363 7 C 0.411 3.589 8 O -0.416 6.416 9 N -0.316 5.316 10 C 0.057 3.943 11 C -0.216 4.216 12 C -0.068 4.068 13 C -0.217 4.217 14 C 0.116 3.884 15 O -0.118 6.118 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.514 5.514 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.245 4.245 25 C -0.067 4.067 26 C 0.312 3.688 27 O -0.334 6.334 28 C -0.019 4.019 29 H 0.144 0.856 30 C -0.150 4.150 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.412 21.941 9.393 24.271 hybrid contribution -0.230 -0.614 0.288 0.716 sum 4.182 21.326 9.682 23.792 Atomic orbital electron populations 1.21830 0.94197 1.02494 1.02006 1.21051 0.96451 0.99446 0.93689 0.90632 1.21909 0.94848 1.02397 0.98507 1.21219 0.93485 1.00072 0.82041 1.47629 1.42447 1.39441 1.06768 1.15621 0.81051 0.79886 0.82392 1.90951 1.45178 1.56607 1.48872 1.46883 1.42078 1.34117 1.08568 1.20389 0.91821 0.82965 0.99170 1.19393 1.07136 0.97403 0.97644 1.20603 0.96866 0.92669 0.96626 1.20204 1.03673 0.99341 0.98444 1.19187 0.90827 0.85351 0.93059 1.83573 1.50772 1.31683 1.45762 1.20798 1.17031 1.10668 0.98134 0.87530 1.24477 0.94308 0.97318 0.97804 1.69647 1.23073 1.28862 1.29796 0.86184 0.79857 0.79428 0.81474 1.19847 1.20677 1.18301 1.21257 1.06100 0.96368 1.00762 1.20747 0.93873 0.95433 0.96627 1.20706 0.78469 0.81310 0.88282 1.90796 1.59697 1.69830 1.13107 1.22373 0.97406 0.99237 0.82911 0.85596 1.21860 0.90613 1.03123 0.99446 0.92247 0.92334 0.92275 0.89788 0.90928 0.88523 0.90960 0.88567 0.88828 0.86404 0.86413 0.90961 0.84830 0.86875 0.89283 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.17 37.16 0.34 -0.55 16 2 C -0.09 -0.54 2.60 -90.58 -0.24 -0.78 16 3 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.14 -0.89 5.30 -27.20 -0.14 -1.03 16 5 C 0.15 1.13 6.92 -4.44 -0.03 1.10 16 6 N -0.62 -6.42 3.05 -172.75 -0.53 -6.95 16 7 C 0.71 9.75 8.35 -88.59 -0.74 9.01 16 8 O -0.54 -8.95 17.27 5.34 0.09 -8.86 16 9 N -0.57 -7.81 2.60 -122.30 -0.32 -8.13 16 10 C 0.18 2.46 5.85 -5.19 -0.03 2.43 16 11 C -0.21 -3.68 5.47 -104.57 -0.57 -4.26 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -4.04 9.99 -39.40 -0.39 -4.43 16 14 C 0.17 3.96 6.65 -39.11 -0.26 3.70 16 15 O -0.21 -5.68 8.59 0.05 0.00 -5.68 16 16 C -0.39 -11.06 9.95 30.89 0.31 -10.75 16 17 H 0.11 3.09 5.44 -52.48 -0.29 2.80 16 18 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 19 N -0.88 -25.28 13.96 55.48 0.77 -24.51 16 20 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 26 C 0.53 6.74 7.69 -10.64 -0.08 6.66 16 27 O -0.47 -7.07 17.78 5.59 0.10 -6.97 16 28 C 0.09 0.81 3.87 -67.99 -0.26 0.54 16 29 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 30 C -0.11 -0.93 4.83 -26.55 -0.13 -1.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.79 8.00 -51.93 -0.42 0.38 16 37 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.10 1.25 7.78 -51.93 -0.40 0.85 16 39 H 0.09 1.19 7.97 -51.93 -0.41 0.77 16 40 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 44 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -32.61 382.54 -8.88 -41.49 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.44 Total: 2.60 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.45 Total: -5.59 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.07 Total: -39.58 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.19 Total: -21.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.61 -8.88 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277748592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.783 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds