Wall clock time and date at job start Wed Apr 1 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.26376 * 2 1 4 4 C 1.52888 * 109.26782 * 119.46836 * 2 1 3 5 5 C 1.52202 * 109.96403 * 182.10364 * 4 2 1 6 6 N 1.46515 * 108.12810 * 309.79787 * 5 4 2 7 7 C 1.33521 * 129.69804 * 232.24295 * 6 5 4 8 8 O 1.21532 * 124.00653 * 349.24141 * 7 6 5 9 9 N 1.34161 * 111.99155 * 169.21569 * 7 6 5 10 10 C 1.46503 * 124.17845 * 183.44434 * 9 7 6 11 11 C 1.50701 * 109.47448 * 90.01898 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38880 * 119.93215 * 0.52061 * 13 12 11 15 15 O 1.35751 * 120.06991 * 179.72564 * 14 13 12 16 16 C 1.34830 * 116.99835 * 174.48953 * 15 14 13 17 17 H 1.08005 * 120.00046 * 5.05655 * 16 15 14 18 18 C 1.38655 * 120.00076 * 185.05845 * 16 15 14 19 19 N 1.31558 * 120.00101 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99891 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47304 * 89.99841 * 20 18 16 22 22 H 1.48500 * 109.47356 * 210.00169 * 20 18 16 23 23 H 1.48507 * 109.47412 * 330.00083 * 20 18 16 24 24 C 1.38878 * 119.86025 * 359.75299 * 14 13 12 25 25 C 1.38102 * 119.93360 * 359.97438 * 24 14 13 26 26 C 1.35002 * 111.64554 * 3.70117 * 9 7 6 27 27 O 1.21237 * 127.18889 * 182.33752 * 26 9 7 28 28 C 1.47894 * 123.29857 * 49.01754 * 6 5 4 29 29 H 1.08995 * 111.64672 * 71.63272 * 28 6 5 30 30 C 1.53164 * 107.16158 * 309.30698 * 28 6 5 31 31 H 1.09003 * 109.47259 * 179.50054 * 1 2 3 32 32 H 1.09006 * 109.46413 * 299.49788 * 1 2 3 33 33 H 1.09000 * 109.47191 * 59.49561 * 1 2 3 34 34 H 1.09001 * 109.43027 * 302.64536 * 4 2 1 35 35 H 1.08995 * 109.43150 * 62.50544 * 4 2 1 36 36 H 1.08998 * 110.47547 * 189.51860 * 5 4 2 37 37 H 1.09010 * 108.51768 * 68.93781 * 5 4 2 38 38 H 1.08992 * 109.46850 * 330.01552 * 10 9 7 39 39 H 1.09001 * 109.46885 * 210.02169 * 10 9 7 40 40 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 41 41 H 1.08005 * 120.03360 * 180.26705 * 13 12 11 42 42 H 0.97000 * 119.99761 * 179.97438 * 19 18 16 43 43 H 1.07999 * 120.03611 * 179.97438 * 24 14 13 44 44 H 1.07997 * 119.96808 * 180.02562 * 25 24 14 45 45 H 1.09006 * 109.59939 * 172.93301 * 30 28 6 46 46 H 1.09002 * 109.60565 * 293.24605 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8896 1.0290 0.0000 4 6 2.0345 -0.7100 1.2565 5 6 3.5555 -0.6735 1.2987 6 7 4.0588 -1.1389 0.0038 7 6 4.9531 -2.0915 -0.2713 8 8 5.6548 -2.6267 0.5643 9 7 4.9847 -2.3883 -1.5792 10 6 5.8154 -3.4440 -2.1638 11 6 5.0451 -4.7392 -2.1784 12 6 5.1237 -5.6012 -1.0997 13 6 4.4146 -6.7861 -1.1077 14 6 3.6303 -7.1169 -2.2051 15 8 2.9364 -8.2836 -2.2182 16 6 2.1069 -8.4907 -3.2608 17 1 2.0784 -7.7838 -4.0769 18 6 1.2903 -9.6110 -3.2852 19 7 0.4806 -9.8128 -4.3022 20 14 1.3400 -10.8338 -1.8740 21 1 0.3478 -10.4394 -0.8420 22 1 1.0129 -12.1902 -2.3824 23 1 2.6991 -10.8441 -1.2755 24 6 3.5578 -6.2519 -3.2892 25 6 4.2649 -5.0657 -3.2728 26 6 4.1607 -1.5902 -2.2910 27 8 3.9422 -1.6388 -3.4826 28 6 3.5643 -0.6249 -1.2918 29 1 3.9019 0.3951 -1.4750 30 6 2.0355 -0.7120 -1.2586 31 1 -0.3634 -1.0276 -0.0090 32 1 -0.3632 0.5061 0.8945 33 1 -0.3633 0.5216 -0.8854 34 1 1.6308 -0.2148 2.1396 35 1 1.7063 -1.7492 1.2423 36 1 3.9304 -1.3166 2.0950 37 1 3.8725 0.3550 1.4716 38 1 6.7200 -3.5660 -1.5682 39 1 6.0859 -3.1706 -3.1837 40 1 5.7373 -5.3453 -0.2485 41 1 4.4731 -7.4568 -0.2632 42 1 -0.0904 -10.5967 -4.3194 43 1 2.9491 -6.5065 -4.1442 44 1 4.2086 -4.3925 -4.1153 45 1 1.6224 -0.2277 -2.1435 46 1 1.7291 -1.7579 -1.2378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277748592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:13 Heat of formation + Delta-G solvation = -63.143454 kcal Electronic energy + Delta-G solvation = -30456.605506 eV Core-core repulsion = 26311.924915 eV Total energy + Delta-G solvation = -4144.680591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57794 -41.00373 -39.72263 -39.25966 -38.45078 -36.81280 -35.15895 -34.49029 -33.00737 -31.96029 -31.52347 -29.36578 -28.05390 -26.74530 -25.65779 -24.45655 -23.84189 -22.87627 -22.53181 -21.55898 -20.52675 -19.88746 -19.23071 -18.39233 -18.22210 -17.58092 -16.84006 -16.60956 -16.38365 -16.30990 -15.85754 -15.83977 -15.73771 -15.42865 -15.38637 -14.91966 -14.71782 -14.66027 -14.48244 -14.38325 -14.18886 -14.10661 -13.23249 -13.14932 -12.98628 -12.86974 -12.80282 -12.63636 -12.53327 -12.48946 -12.17243 -12.01183 -11.98606 -11.63434 -11.37521 -11.37036 -11.08688 -10.95454 -10.86595 -9.94863 -9.93410 -9.18782 -8.55208 -6.28963 0.32613 0.45163 0.58693 1.19325 1.28525 1.33173 1.49093 1.94581 2.02045 2.24137 2.69224 2.93317 2.97473 3.07473 3.45208 3.70907 3.81178 3.84070 3.91930 3.95412 4.03318 4.07057 4.13623 4.31394 4.36832 4.49681 4.53447 4.59321 4.62830 4.66474 4.70799 4.82913 4.85038 4.89162 4.94769 4.99618 5.08398 5.12599 5.23478 5.25834 5.35501 5.45882 5.49473 5.52165 5.62035 5.70328 5.81121 6.10820 6.11777 6.33470 6.78192 7.04029 7.49270 8.56179 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.003050 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.495961 B = 9177.187080 C = 9849.175016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 H 0.105 0.895 4 C -0.134 4.134 5 C 0.146 3.854 6 N -0.615 5.615 7 C 0.700 3.300 8 O -0.574 6.574 9 N -0.578 5.578 10 C 0.175 3.825 11 C -0.187 4.187 12 C -0.043 4.043 13 C -0.194 4.194 14 C 0.134 3.866 15 O -0.239 6.239 16 C -0.404 4.404 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.264 1.264 23 H -0.263 1.263 24 C -0.238 4.238 25 C -0.048 4.048 26 C 0.519 3.481 27 O -0.493 6.493 28 C 0.097 3.903 29 H 0.168 0.832 30 C -0.111 4.111 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.286 0.714 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 25.834 11.733 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.123 0.877 4 C -0.172 4.172 5 C 0.027 3.973 6 N -0.353 5.353 7 C 0.403 3.597 8 O -0.451 6.451 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.062 4.062 13 C -0.213 4.213 14 C 0.084 3.916 15 O -0.146 6.146 16 C -0.480 4.480 17 H 0.098 0.902 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.257 4.257 25 C -0.066 4.066 26 C 0.308 3.692 27 O -0.364 6.364 28 C -0.009 4.009 29 H 0.185 0.815 30 C -0.150 4.150 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.118 0.882 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.459 25.202 11.705 28.319 hybrid contribution -0.402 -1.273 -0.405 1.395 sum 5.057 23.929 11.300 26.942 Atomic orbital electron populations 1.21827 0.94192 1.01487 1.02990 1.21059 0.96358 1.00472 0.92063 0.87717 1.21906 0.94187 1.01220 0.99878 1.21536 0.93895 1.01581 0.80301 1.47845 1.41084 1.38175 1.08203 1.15784 0.81549 0.80440 0.81924 1.90926 1.46669 1.58004 1.49480 1.46848 1.42307 1.34040 1.09022 1.20428 0.91824 0.81435 1.00836 1.19827 1.04715 0.98332 0.95998 1.20900 0.96219 0.91567 0.97483 1.20482 1.02755 1.00279 0.97771 1.19647 0.91901 0.85404 0.94638 1.83522 1.52125 1.33576 1.45376 1.20720 1.18173 1.10768 0.98374 0.90176 1.25285 0.93876 0.99001 1.00375 1.69726 1.24425 1.30073 1.31690 0.85228 0.79570 0.77646 0.78344 1.18997 1.18885 1.18726 1.21247 1.06751 0.97696 1.00029 1.20892 0.93510 0.94362 0.97864 1.21336 0.77932 0.81528 0.88443 1.90786 1.60511 1.70672 1.14467 1.22570 0.97536 0.99853 0.80933 0.81523 1.21891 0.90009 1.01652 1.01398 0.94265 0.90846 0.91847 0.87132 0.93625 0.89513 0.87488 0.86867 0.87177 0.83904 0.85123 0.90392 0.87140 0.85393 0.88246 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.17 71.98 0.66 -0.77 16 2 C -0.08 -0.72 2.60 -10.77 -0.03 -0.75 16 3 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.13 -1.32 5.30 30.29 0.16 -1.16 16 5 C 0.15 1.67 6.92 86.11 0.60 2.27 16 6 N -0.62 -10.90 3.05 -819.45 -2.50 -13.40 16 7 C 0.70 17.74 8.35 179.64 1.50 19.24 16 8 O -0.57 -17.80 17.27 -3.82 -0.07 -17.87 16 9 N -0.58 -14.57 2.60 -777.75 -2.02 -16.60 16 10 C 0.17 4.48 5.85 85.63 0.50 4.98 16 11 C -0.19 -6.18 5.47 -19.83 -0.11 -6.28 16 12 C -0.04 -1.49 9.69 22.25 0.22 -1.27 16 13 C -0.19 -7.88 9.99 22.39 0.22 -7.65 16 14 C 0.13 6.51 6.65 22.58 0.15 6.66 16 15 O -0.24 -13.29 8.59 -22.74 -0.20 -13.49 16 16 C -0.40 -24.26 9.95 67.92 0.68 -23.59 16 17 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 18 C 0.01 0.80 5.49 84.83 0.47 1.27 16 19 N -0.92 -55.28 13.96 21.61 0.30 -54.98 16 20 Si 0.97 45.82 28.62 68.60 1.96 47.78 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 24 C -0.24 -10.99 9.17 22.39 0.21 -10.79 16 25 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 26 C 0.52 12.28 7.69 87.78 0.68 12.96 16 27 O -0.49 -14.33 17.78 -2.90 -0.05 -14.38 16 28 C 0.10 1.48 3.87 44.19 0.17 1.65 16 29 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 30 C -0.11 -1.60 4.83 30.71 0.15 -1.45 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 1.22 8.00 -2.39 -0.02 1.20 16 37 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.11 2.60 7.78 -2.39 -0.02 2.58 16 39 H 0.11 2.51 7.97 -2.39 -0.02 2.49 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.11 5.58 5.64 -2.91 -0.02 5.57 16 44 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 Total: -1.00 -75.32 382.54 4.85 -70.46 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.00 Total: 18.74 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.43 Total: -6.28 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.22 Total: -84.97 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.31 Total: -45.74 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.96 Total: 47.78 kcal Total: -75.32 4.85 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277748592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.320 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds