Wall clock time and date at job start Wed Apr 1 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.13027 * 2 1 4 4 N 1.45755 * 109.30016 * 119.47961 * 2 1 3 5 5 C 1.33365 * 124.10381 * 101.23846 * 4 2 1 6 6 O 1.21278 * 118.24212 * 182.24629 * 5 4 2 7 7 C 1.50172 * 123.50632 * 2.22150 * 5 4 2 8 8 C 1.53069 * 109.89654 * 342.42080 * 7 5 4 9 9 C 1.52924 * 109.29934 * 240.51612 * 2 1 3 10 10 H 1.09006 * 109.73404 * 170.60597 * 9 2 1 11 11 N 1.46500 * 109.60271 * 50.20178 * 9 2 1 12 12 C 1.34769 * 119.99975 * 155.81424 * 11 9 2 13 13 O 1.21726 * 120.00343 * 359.97438 * 12 11 9 14 14 C 1.46258 * 120.00099 * 179.97438 * 12 11 9 15 15 C 1.35021 * 120.00547 * 179.97438 * 14 12 11 16 16 C 1.46956 * 120.00372 * 179.97438 * 15 14 12 17 17 C 1.40022 * 120.10169 * 180.02562 * 16 15 14 18 18 C 1.37596 * 119.89892 * 180.02562 * 17 16 15 19 19 C 1.39179 * 120.09969 * 359.97438 * 18 17 16 20 20 O 1.35571 * 119.89540 * 179.97438 * 19 18 17 21 21 C 1.34787 * 117.00108 * 5.55481 * 20 19 18 22 22 H 1.08001 * 120.00123 * 354.93675 * 21 20 19 23 23 C 1.38713 * 119.99816 * 174.94327 * 21 20 19 24 24 N 1.31505 * 120.00093 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00123 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47376 * 89.99963 * 25 23 21 27 27 H 1.48503 * 109.47061 * 210.00104 * 25 23 21 28 28 H 1.48500 * 109.47288 * 329.99765 * 25 23 21 29 29 C 1.39173 * 120.20045 * 0.25946 * 19 18 17 30 30 C 1.37596 * 120.10489 * 359.48486 * 29 19 18 31 31 H 1.09007 * 109.47332 * 179.48421 * 1 2 3 32 32 H 1.09000 * 109.47362 * 299.48025 * 1 2 3 33 33 H 1.08996 * 109.47317 * 59.48572 * 1 2 3 34 34 H 0.96997 * 117.95177 * 281.24067 * 4 2 1 35 35 H 1.09002 * 109.40198 * 222.28783 * 7 5 4 36 36 H 1.09004 * 109.32970 * 102.50718 * 7 5 4 37 37 H 1.09002 * 109.66761 * 289.16736 * 8 7 5 38 38 H 1.08996 * 109.67608 * 168.63891 * 8 7 5 39 39 H 0.97000 * 119.99955 * 335.80518 * 11 9 2 40 40 H 1.08008 * 119.99499 * 359.97438 * 14 12 11 41 41 H 1.08007 * 119.99397 * 0.02562 * 15 14 12 42 42 H 1.08003 * 120.05044 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.94831 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99989 * 179.97438 * 24 23 21 45 45 H 1.08008 * 119.94551 * 179.74069 * 29 19 18 46 46 H 1.08003 * 120.04976 * 180.22875 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8871 1.0298 0.0000 4 7 2.0117 -0.6770 1.1975 5 6 2.4620 -1.9322 1.2170 6 8 2.7990 -2.4045 2.2819 7 6 2.5734 -2.7920 -0.0092 8 6 1.7189 -2.2059 -1.1358 9 6 2.0354 -0.7104 -1.2564 10 1 3.1124 -0.5709 -1.3500 11 7 1.3641 -0.1594 -2.4362 12 6 1.9493 -0.2473 -3.6470 13 8 3.0359 -0.7842 -3.7603 14 6 1.2789 0.3022 -4.8250 15 6 1.8654 0.2146 -6.0380 16 6 1.1915 0.7663 -7.2217 17 6 1.7976 0.6761 -8.4807 18 6 1.1631 1.1946 -9.5861 19 6 -0.0795 1.8075 -9.4542 20 8 -0.7006 2.3174 -10.5461 21 6 -0.1173 2.0966 -11.7409 22 1 0.8441 1.6070 -11.7902 23 6 -0.7517 2.4983 -12.9072 24 7 -0.1824 2.2833 -14.0730 25 14 -2.4148 3.3446 -12.8219 26 1 -2.2184 4.8129 -12.7175 27 1 -3.1912 3.0351 -14.0494 28 1 -3.1571 2.8586 -11.6312 29 6 -0.6834 1.9038 -8.2041 30 6 -0.0588 1.3835 -7.0939 31 1 -0.3634 -1.0277 -0.0093 32 1 -0.3634 0.5057 0.8946 33 1 -0.3634 0.5218 -0.8853 34 1 2.0043 -0.1837 2.0327 35 1 2.2264 -3.7991 0.2220 36 1 3.6149 -2.8323 -0.3282 37 1 0.6625 -2.3398 -0.9027 38 1 1.9546 -2.7077 -2.0743 39 1 0.4983 0.2687 -2.3459 40 1 0.3146 0.7782 -4.7245 41 1 2.8295 -0.2618 -6.1384 42 1 2.7620 0.2010 -8.5839 43 1 1.6297 1.1250 -10.5577 44 1 -0.6262 2.5639 -14.8886 45 1 -1.6459 2.3840 -8.1059 46 1 -0.5301 1.4554 -6.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282283088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:22 Heat of formation + Delta-G solvation = -60.568802 kcal Electronic energy + Delta-G solvation = -28117.898891 eV Core-core repulsion = 23973.329946 eV Total energy + Delta-G solvation = -4144.568945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16190 -39.67205 -39.32992 -37.59392 -37.03974 -34.44614 -33.38430 -33.04360 -32.50172 -30.86093 -30.57558 -28.66043 -27.13414 -25.65386 -24.24305 -23.63297 -22.44992 -22.21874 -20.83591 -19.83192 -19.10140 -18.14011 -17.63104 -17.49222 -17.24054 -16.82783 -16.24923 -15.53436 -15.22401 -15.05731 -14.86637 -14.54197 -14.39815 -14.22257 -14.12061 -14.05917 -13.99268 -13.70438 -13.14751 -12.90124 -12.67515 -12.58059 -12.45452 -12.26779 -12.21056 -11.94172 -11.87165 -11.60753 -11.36949 -11.24930 -11.06406 -10.81364 -10.31550 -10.18484 -9.96843 -9.72915 -9.64297 -9.59469 -9.37412 -8.96836 -8.52298 -7.30214 -6.64455 -4.28315 0.90256 1.98519 2.21759 2.38977 2.60386 3.06072 3.09275 3.12221 3.25217 3.40131 3.91365 4.04957 4.12806 4.15700 4.37721 4.39553 4.57224 4.58064 4.70911 4.80268 4.85772 4.90258 5.04039 5.10076 5.16907 5.22067 5.36581 5.37341 5.42531 5.46473 5.53569 5.56430 5.77368 5.88964 5.96080 6.12147 6.24679 6.28176 6.33649 6.46775 6.61840 6.83145 6.87109 7.03724 7.09991 7.32504 7.36885 7.58246 7.76069 7.79667 8.14813 8.68564 9.28337 10.41635 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.033839 B = 0.001574 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.243099 B =17785.549468 C =18364.291322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 H 0.094 0.906 4 N -0.713 5.713 5 C 0.521 3.479 6 O -0.557 6.557 7 C -0.133 4.133 8 C -0.137 4.137 9 C 0.139 3.861 10 H 0.098 0.902 11 N -0.728 5.728 12 C 0.558 3.442 13 O -0.553 6.553 14 C -0.282 4.282 15 C 0.041 3.959 16 C -0.192 4.192 17 C -0.036 4.036 18 C -0.230 4.230 19 C 0.174 3.826 20 O -0.201 6.201 21 C -0.392 4.392 22 H 0.111 0.889 23 C 0.067 3.933 24 N -0.865 5.865 25 Si 0.907 3.093 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.258 1.258 29 C -0.200 4.200 30 C -0.044 4.044 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.402 0.598 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.401 0.599 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.284 0.716 45 H 0.121 0.879 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -3.502 24.693 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.025 3.975 3 H 0.112 0.888 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.435 6.435 7 C -0.173 4.173 8 C -0.176 4.176 9 C 0.033 3.967 10 H 0.116 0.884 11 N -0.382 5.382 12 C 0.351 3.649 13 O -0.432 6.432 14 C -0.303 4.303 15 C 0.021 3.979 16 C -0.193 4.193 17 C -0.054 4.054 18 C -0.249 4.249 19 C 0.119 3.881 20 O -0.104 6.104 21 C -0.467 4.467 22 H 0.128 0.872 23 C -0.139 4.139 24 N -0.501 5.501 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.182 1.182 29 C -0.219 4.219 30 C -0.062 4.062 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.238 0.762 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.238 0.762 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.573 -4.089 24.618 24.962 hybrid contribution -1.091 0.850 0.036 1.384 sum -0.518 -3.239 24.654 24.871 Atomic orbital electron populations 1.22376 0.94601 1.03384 1.02922 1.21099 0.94907 0.96911 0.84632 0.88816 1.45468 1.65196 1.14051 1.11808 1.20304 0.75832 0.81876 0.91180 1.90774 1.49546 1.71506 1.31695 1.21618 1.03443 0.99815 0.92444 1.22146 1.00492 0.95400 0.99569 1.21014 0.99010 0.92717 0.83994 0.88363 1.45923 1.23781 1.61843 1.06604 1.18428 0.84878 0.78360 0.83260 1.90798 1.21418 1.44982 1.86044 1.22404 1.03268 1.12300 0.92373 1.22318 0.96556 0.88083 0.90970 1.18512 0.97628 1.10367 0.92820 1.21049 0.97935 0.95110 0.91311 1.21227 0.97054 1.06587 1.00059 1.19371 0.90984 0.90317 0.87416 1.83502 1.48334 1.64563 1.13987 1.20886 1.05630 1.40692 0.79488 0.87158 1.24543 0.99545 0.96383 0.93440 1.69613 1.39146 1.43723 0.97600 0.86154 0.82181 0.79994 0.78485 1.19627 1.20507 1.18184 1.20145 1.02088 1.09229 0.90452 1.20873 0.93440 0.94788 0.97146 0.91379 0.91377 0.90977 0.76232 0.87693 0.87707 0.90631 0.89520 0.76194 0.85817 0.85738 0.86505 0.84486 0.90606 0.86118 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 9.01 37.15 0.33 -0.25 16 2 C 0.13 0.60 3.62 -68.37 -0.25 0.35 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 4 N -0.71 -4.32 5.03 -54.85 -0.28 -4.60 16 5 C 0.52 4.60 7.71 -11.87 -0.09 4.51 16 6 O -0.56 -7.25 17.78 5.56 0.10 -7.15 16 7 C -0.13 -0.93 6.03 -28.10 -0.17 -1.10 16 8 C -0.14 -0.92 5.56 -26.52 -0.15 -1.07 16 9 C 0.14 0.94 2.22 -67.79 -0.15 0.79 16 10 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 11 N -0.73 -5.30 4.99 -55.11 -0.27 -5.58 16 12 C 0.56 6.30 7.70 -13.04 -0.10 6.19 16 13 O -0.55 -8.20 15.90 5.17 0.08 -8.12 16 14 C -0.28 -3.17 9.41 -37.50 -0.35 -3.52 16 15 C 0.04 0.54 9.45 -37.20 -0.35 0.18 16 16 C -0.19 -2.93 5.87 -105.03 -0.62 -3.54 16 17 C -0.04 -0.59 9.78 -39.15 -0.38 -0.97 16 18 C -0.23 -4.53 9.14 -39.47 -0.36 -4.89 16 19 C 0.17 3.66 6.66 -38.89 -0.26 3.40 16 20 O -0.20 -4.89 8.57 0.72 0.01 -4.89 16 21 C -0.39 -10.28 9.94 30.91 0.31 -9.97 16 22 H 0.11 2.95 5.41 -52.49 -0.28 2.66 16 23 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 24 N -0.87 -23.48 13.96 55.48 0.77 -22.70 16 25 Si 0.91 20.17 28.62 -169.99 -4.86 15.30 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 29 C -0.20 -3.53 9.97 -39.47 -0.39 -3.92 16 30 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 31 H 0.07 0.28 6.51 -51.92 -0.34 -0.06 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.16 6.14 -51.93 -0.32 -0.15 16 34 H 0.40 2.07 8.80 -40.82 -0.36 1.71 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.43 6.38 -51.93 -0.33 0.10 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 1.92 6.30 -40.82 -0.26 1.66 16 40 H 0.12 1.12 6.07 -52.48 -0.32 0.81 16 41 H 0.12 1.66 7.52 -52.48 -0.39 1.27 16 42 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 43 H 0.14 2.83 5.62 -52.48 -0.29 2.54 16 44 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 46 H 0.12 1.37 6.16 -52.48 -0.32 1.05 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -31.72 380.78 -7.87 -39.59 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.71 Total: 5.60 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.45 Total: -13.20 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.22 Total: -32.88 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.19 Total: -20.15 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.86 Total: 15.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.72 -7.87 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282283088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.975 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds