Wall clock time and date at job start Wed Apr 1 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.13027 * 2 1 4 4 N 1.45755 * 109.30016 * 119.47961 * 2 1 3 5 5 C 1.33365 * 124.10381 * 101.23846 * 4 2 1 6 6 O 1.21278 * 118.24212 * 182.24629 * 5 4 2 7 7 C 1.50172 * 123.50632 * 2.22150 * 5 4 2 8 8 C 1.53069 * 109.89654 * 342.42080 * 7 5 4 9 9 C 1.52924 * 109.29934 * 240.51612 * 2 1 3 10 10 H 1.09006 * 109.73404 * 170.60597 * 9 2 1 11 11 N 1.46500 * 109.60271 * 50.20178 * 9 2 1 12 12 C 1.34769 * 119.99975 * 155.81424 * 11 9 2 13 13 O 1.21726 * 120.00343 * 359.97438 * 12 11 9 14 14 C 1.46258 * 120.00099 * 179.97438 * 12 11 9 15 15 C 1.35021 * 120.00547 * 179.97438 * 14 12 11 16 16 C 1.46956 * 120.00372 * 179.97438 * 15 14 12 17 17 C 1.40022 * 120.10169 * 180.02562 * 16 15 14 18 18 C 1.37596 * 119.89892 * 180.02562 * 17 16 15 19 19 C 1.39179 * 120.09969 * 359.97438 * 18 17 16 20 20 O 1.35571 * 119.89540 * 179.97438 * 19 18 17 21 21 C 1.34787 * 117.00108 * 5.55481 * 20 19 18 22 22 H 1.08001 * 120.00123 * 354.93675 * 21 20 19 23 23 C 1.38713 * 119.99816 * 174.94327 * 21 20 19 24 24 N 1.31505 * 120.00093 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00123 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47376 * 89.99963 * 25 23 21 27 27 H 1.48503 * 109.47061 * 210.00104 * 25 23 21 28 28 H 1.48500 * 109.47288 * 329.99765 * 25 23 21 29 29 C 1.39173 * 120.20045 * 0.25946 * 19 18 17 30 30 C 1.37596 * 120.10489 * 359.48486 * 29 19 18 31 31 H 1.09007 * 109.47332 * 179.48421 * 1 2 3 32 32 H 1.09000 * 109.47362 * 299.48025 * 1 2 3 33 33 H 1.08996 * 109.47317 * 59.48572 * 1 2 3 34 34 H 0.96997 * 117.95177 * 281.24067 * 4 2 1 35 35 H 1.09002 * 109.40198 * 222.28783 * 7 5 4 36 36 H 1.09004 * 109.32970 * 102.50718 * 7 5 4 37 37 H 1.09002 * 109.66761 * 289.16736 * 8 7 5 38 38 H 1.08996 * 109.67608 * 168.63891 * 8 7 5 39 39 H 0.97000 * 119.99955 * 335.80518 * 11 9 2 40 40 H 1.08008 * 119.99499 * 359.97438 * 14 12 11 41 41 H 1.08007 * 119.99397 * 0.02562 * 15 14 12 42 42 H 1.08003 * 120.05044 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.94831 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99989 * 179.97438 * 24 23 21 45 45 H 1.08008 * 119.94551 * 179.74069 * 29 19 18 46 46 H 1.08003 * 120.04976 * 180.22875 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8871 1.0298 0.0000 4 7 2.0117 -0.6770 1.1975 5 6 2.4620 -1.9322 1.2170 6 8 2.7990 -2.4045 2.2819 7 6 2.5734 -2.7920 -0.0092 8 6 1.7189 -2.2059 -1.1358 9 6 2.0354 -0.7104 -1.2564 10 1 3.1124 -0.5709 -1.3500 11 7 1.3641 -0.1594 -2.4362 12 6 1.9493 -0.2473 -3.6470 13 8 3.0359 -0.7842 -3.7603 14 6 1.2789 0.3022 -4.8250 15 6 1.8654 0.2146 -6.0380 16 6 1.1915 0.7663 -7.2217 17 6 1.7976 0.6761 -8.4807 18 6 1.1631 1.1946 -9.5861 19 6 -0.0795 1.8075 -9.4542 20 8 -0.7006 2.3174 -10.5461 21 6 -0.1173 2.0966 -11.7409 22 1 0.8441 1.6070 -11.7902 23 6 -0.7517 2.4983 -12.9072 24 7 -0.1824 2.2833 -14.0730 25 14 -2.4148 3.3446 -12.8219 26 1 -2.2184 4.8129 -12.7175 27 1 -3.1912 3.0351 -14.0494 28 1 -3.1571 2.8586 -11.6312 29 6 -0.6834 1.9038 -8.2041 30 6 -0.0588 1.3835 -7.0939 31 1 -0.3634 -1.0277 -0.0093 32 1 -0.3634 0.5057 0.8946 33 1 -0.3634 0.5218 -0.8853 34 1 2.0043 -0.1837 2.0327 35 1 2.2264 -3.7991 0.2220 36 1 3.6149 -2.8323 -0.3282 37 1 0.6625 -2.3398 -0.9027 38 1 1.9546 -2.7077 -2.0743 39 1 0.4983 0.2687 -2.3459 40 1 0.3146 0.7782 -4.7245 41 1 2.8295 -0.2618 -6.1384 42 1 2.7620 0.2010 -8.5839 43 1 1.6297 1.1250 -10.5577 44 1 -0.6262 2.5639 -14.8886 45 1 -1.6459 2.3840 -8.1059 46 1 -0.5301 1.4554 -6.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282283088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:21 Heat of formation + Delta-G solvation = -82.764800 kcal Electronic energy + Delta-G solvation = -28118.861382 eV Core-core repulsion = 23973.329946 eV Total energy + Delta-G solvation = -4145.531436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80922 -40.95554 -40.44670 -38.66572 -38.17449 -35.17152 -34.74671 -34.19382 -33.66609 -31.98411 -31.43412 -29.86234 -27.89196 -27.25801 -24.87924 -24.56269 -23.78471 -23.13138 -21.90560 -20.79435 -20.06819 -19.50753 -19.11041 -18.37619 -18.10538 -17.48339 -16.98847 -16.67053 -16.38472 -16.22451 -15.78171 -15.73140 -15.57642 -15.44588 -15.10025 -15.01102 -14.86612 -14.63958 -14.36995 -14.23497 -14.04374 -13.60940 -13.37707 -13.14228 -13.05788 -12.83461 -12.74154 -12.71636 -12.57796 -12.33032 -12.09369 -11.92595 -11.89356 -11.28955 -11.13583 -11.00222 -10.86551 -10.64884 -10.20955 -10.09948 -9.89233 -8.71444 -8.52661 -6.24576 -0.24717 0.57593 1.13217 1.33550 1.38901 1.52744 1.53904 1.97779 2.26916 2.35914 2.44151 2.81476 3.02532 3.18104 3.42013 3.55697 3.68263 3.79428 3.90989 3.95796 4.07122 4.12096 4.27141 4.32535 4.36382 4.38894 4.48248 4.61874 4.67290 4.71906 4.84876 4.86625 4.89945 4.98317 5.04362 5.14926 5.24152 5.31504 5.38536 5.42507 5.45068 5.61250 5.72664 5.77867 5.82803 5.85670 6.16854 6.24029 6.60571 6.80561 7.13317 7.30819 7.52101 8.58130 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.033839 B = 0.001574 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.243099 B =17785.549468 C =18364.291322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.135 3.865 3 H 0.113 0.887 4 N -0.702 5.702 5 C 0.518 3.482 6 O -0.606 6.606 7 C -0.130 4.130 8 C -0.130 4.130 9 C 0.137 3.863 10 H 0.079 0.921 11 N -0.703 5.703 12 C 0.553 3.447 13 O -0.589 6.589 14 C -0.236 4.236 15 C 0.009 3.991 16 C -0.159 4.159 17 C -0.048 4.048 18 C -0.245 4.245 19 C 0.135 3.865 20 O -0.234 6.234 21 C -0.403 4.403 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.265 1.265 27 H -0.269 1.269 28 H -0.258 1.258 29 C -0.194 4.194 30 C -0.038 4.038 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.419 0.581 40 H 0.160 0.840 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.286 0.714 45 H 0.139 0.861 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -2.953 29.136 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.030 3.970 3 H 0.131 0.869 4 N -0.353 5.353 5 C 0.307 3.693 6 O -0.488 6.488 7 C -0.170 4.170 8 C -0.169 4.169 9 C 0.031 3.969 10 H 0.097 0.903 11 N -0.358 5.358 12 C 0.344 3.656 13 O -0.471 6.471 14 C -0.256 4.256 15 C -0.011 4.011 16 C -0.160 4.160 17 C -0.066 4.066 18 C -0.264 4.264 19 C 0.084 3.916 20 O -0.140 6.140 21 C -0.479 4.479 22 H 0.101 0.899 23 C -0.187 4.187 24 N -0.558 5.558 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.194 1.194 28 H -0.182 1.182 29 C -0.213 4.213 30 C -0.056 4.056 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.177 0.823 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.157 0.843 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.402 -3.516 29.133 29.378 hybrid contribution -0.255 0.482 -0.671 0.864 sum -1.657 -3.034 28.463 28.672 Atomic orbital electron populations 1.22390 0.92898 1.03535 1.04337 1.21202 0.96062 0.97056 0.82677 0.86928 1.45447 1.63847 1.13218 1.12763 1.20555 0.75324 0.82605 0.90848 1.90755 1.51970 1.72721 1.33346 1.21593 1.03560 0.99966 0.91893 1.22073 1.01251 0.95029 0.98539 1.21034 0.98099 0.93140 0.84661 0.90288 1.45715 1.24053 1.60457 1.05534 1.18530 0.84480 0.78192 0.84366 1.90813 1.23168 1.46452 1.86676 1.22792 1.03387 1.08167 0.91288 1.22158 0.97265 0.90700 0.90966 1.18827 0.97202 1.07222 0.92722 1.21293 0.98910 0.95200 0.91177 1.21221 0.97371 1.07640 1.00173 1.19970 0.91810 0.91749 0.88062 1.83458 1.49149 1.67698 1.13711 1.20749 1.05073 1.41065 0.81058 0.89935 1.25332 1.03087 0.97343 0.92983 1.69705 1.41079 1.46732 0.98238 0.85200 0.77957 0.78966 0.78528 1.19022 1.19424 1.18181 1.20516 1.02734 1.08523 0.89522 1.21379 0.92846 0.92999 0.98351 0.91870 0.90441 0.89137 0.75503 0.87132 0.87881 0.89064 0.90979 0.74102 0.82265 0.86167 0.84546 0.87126 0.90422 0.84317 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 9.01 71.98 0.65 0.36 16 2 C 0.14 0.68 3.62 45.10 0.16 0.85 16 3 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 4 N -0.70 -6.62 5.03 -446.64 -2.25 -8.87 16 5 C 0.52 8.37 7.71 87.71 0.68 9.05 16 6 O -0.61 -15.47 17.78 -3.02 -0.05 -15.52 16 7 C -0.13 -1.63 6.03 29.71 0.18 -1.45 16 8 C -0.13 -1.37 5.56 30.73 0.17 -1.20 16 9 C 0.14 1.36 2.22 45.08 0.10 1.46 16 10 H 0.08 1.18 7.58 -2.38 -0.02 1.16 16 11 N -0.70 -6.67 4.99 -446.49 -2.23 -8.90 16 12 C 0.55 9.94 7.70 86.33 0.67 10.60 16 13 O -0.59 -15.81 15.90 -4.43 -0.07 -15.88 16 14 C -0.24 -3.90 9.41 23.62 0.22 -3.68 16 15 C 0.01 0.20 9.45 23.82 0.23 0.43 16 16 C -0.16 -4.29 5.87 -20.13 -0.12 -4.41 16 17 C -0.05 -1.55 9.78 22.55 0.22 -1.33 16 18 C -0.24 -10.08 9.14 22.34 0.20 -9.88 16 19 C 0.13 5.79 6.66 22.72 0.15 5.94 16 20 O -0.23 -11.91 8.57 -20.33 -0.17 -12.08 16 21 C -0.40 -22.73 9.94 67.93 0.68 -22.06 16 22 H 0.08 4.90 5.41 -2.91 -0.02 4.88 16 23 C 0.01 0.66 5.49 84.86 0.47 1.13 16 24 N -0.92 -53.07 13.96 21.62 0.30 -52.77 16 25 Si 0.97 43.10 28.62 68.60 1.96 45.06 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 29 C -0.19 -6.38 9.97 22.34 0.22 -6.16 16 30 C -0.04 -0.96 9.40 22.55 0.21 -0.74 16 31 H 0.06 0.22 6.51 -2.38 -0.02 0.20 16 32 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 33 H 0.09 -0.17 6.14 -2.39 -0.01 -0.18 16 34 H 0.41 3.16 8.80 -92.71 -0.82 2.34 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 0.70 6.38 -2.39 -0.02 0.68 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 1.22 6.30 -92.71 -0.58 0.63 16 40 H 0.16 1.52 6.07 -2.91 -0.02 1.50 16 41 H 0.12 2.88 7.52 -2.91 -0.02 2.86 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.11 5.08 5.62 -2.91 -0.02 5.07 16 44 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 46 H 0.17 2.53 6.16 -2.91 -0.02 2.51 16 Total: -1.00 -76.30 380.78 2.23 -74.07 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.35 Total: 15.98 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.09 Total: -21.08 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -4.17 Total: -70.54 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.30 Total: -43.49 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.96 Total: 45.06 kcal Total: -76.30 2.23 -74.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282283088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.691 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds