Wall clock time and date at job start Wed Apr 1 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64278 * 2 1 4 4 C 1.54324 * 110.71952 * 236.85822 * 2 1 3 5 5 N 1.47026 * 107.26732 * 219.44319 * 4 2 1 6 6 C 1.34776 * 125.64204 * 178.90572 * 5 4 2 7 7 O 1.21720 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.46259 * 119.99596 * 179.97438 * 6 5 4 9 9 C 1.35027 * 119.99776 * 179.97438 * 8 6 5 10 10 C 1.46958 * 119.99703 * 180.02562 * 9 8 6 11 11 C 1.40025 * 120.10473 * 359.73122 * 10 9 8 12 12 C 1.37598 * 119.89964 * 179.76057 * 11 10 9 13 13 C 1.39173 * 120.09962 * 0.49378 * 12 11 10 14 14 O 1.35571 * 119.89952 * 179.73971 * 13 12 11 15 15 C 1.34781 * 117.00019 * 174.46407 * 14 13 12 16 16 H 1.07995 * 120.00013 * 5.05830 * 15 14 13 17 17 C 1.38721 * 119.99785 * 185.05763 * 15 14 13 18 18 N 1.31514 * 119.99940 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00018 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47048 * 119.99883 * 19 17 15 22 22 H 1.48497 * 109.47197 * 239.99868 * 19 17 15 23 23 C 1.39183 * 120.20327 * 359.75951 * 13 12 11 24 24 C 1.37593 * 120.09906 * 0.02562 * 23 13 12 25 25 C 1.47415 * 108.70534 * 358.94040 * 5 4 2 26 26 C 1.54901 * 104.83434 * 24.12953 * 25 5 4 27 27 H 1.09000 * 111.00959 * 81.06554 * 26 25 5 28 28 C 1.50709 * 111.00871 * 204.91459 * 26 25 5 29 29 N 1.34779 * 119.99935 * 292.20074 * 28 26 25 30 30 O 1.21286 * 119.99718 * 112.19255 * 28 26 25 31 31 H 1.09001 * 109.46712 * 181.69365 * 1 2 3 32 32 H 1.09007 * 109.47001 * 301.68335 * 1 2 3 33 33 H 1.08991 * 109.47166 * 61.68712 * 1 2 3 34 34 H 1.08994 * 109.88257 * 338.85562 * 4 2 1 35 35 H 1.08996 * 109.88007 * 100.02710 * 4 2 1 36 36 H 1.07996 * 120.00174 * 0.02562 * 8 6 5 37 37 H 1.07996 * 120.00049 * 0.02562 * 9 8 6 38 38 H 1.08005 * 120.04867 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.94742 * 180.23223 * 12 11 10 40 40 H 0.97004 * 119.99720 * 180.02562 * 18 17 15 41 41 H 1.08002 * 119.94181 * 179.97438 * 23 13 12 42 42 H 1.08000 * 120.04530 * 179.97438 * 24 23 13 43 43 H 1.08997 * 110.37068 * 142.96896 * 25 5 4 44 44 H 1.09004 * 110.36881 * 265.18022 * 25 5 4 45 45 H 0.97000 * 119.99660 * 359.97438 * 29 28 26 46 46 H 0.96997 * 119.99751 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2445 -1.5495 -0.7416 6 6 3.9914 -2.3821 -1.4934 7 8 3.7170 -2.5539 -2.6668 8 6 5.1324 -3.0783 -0.8996 9 6 5.8805 -3.9129 -1.6527 10 6 7.0266 -4.6128 -1.0560 11 6 7.3482 -4.4116 0.2919 12 6 8.4193 -5.0729 0.8476 13 6 9.1886 -5.9329 0.0696 14 8 10.2462 -6.5784 0.6199 15 6 10.8805 -7.4827 -0.1523 16 1 10.5929 -7.6067 -1.1859 17 6 11.9029 -8.2543 0.3805 18 7 12.2528 -8.1036 1.6392 19 14 12.7816 -9.5082 -0.6896 20 1 12.2037 -9.4835 -2.0572 21 1 14.2271 -9.1747 -0.7575 22 1 12.6131 -10.8627 -0.1048 23 6 8.8760 -6.1320 -1.2720 24 6 7.8041 -5.4783 -1.8351 25 6 3.4633 -1.2509 0.6854 26 6 2.0790 -0.7975 1.2124 27 1 1.4452 -1.6560 1.4347 28 6 2.2255 0.0903 2.4214 29 7 2.6899 -0.4193 3.5795 30 8 1.9256 1.2635 2.3521 31 1 -0.3633 -1.0273 0.0304 32 1 -0.3633 0.5398 0.8746 33 1 -0.3633 0.4874 -0.9046 34 1 1.3130 -1.4732 -1.5800 35 1 2.3740 -0.0990 -1.9978 36 1 5.3762 -2.9255 0.1413 37 1 5.6365 -4.0659 -2.6936 38 1 6.7544 -3.7409 0.8953 39 1 8.6657 -4.9212 1.8881 40 1 12.9679 -8.6429 2.0117 41 1 9.4761 -6.8000 -1.8720 42 1 7.5625 -5.6331 -2.8762 43 1 3.7960 -2.1446 1.2133 44 1 4.1946 -0.4505 0.7978 45 1 2.9295 -1.3576 3.6348 46 1 2.7845 0.1522 4.3574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284574731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:16 Heat of formation + Delta-G solvation = -87.423156 kcal Electronic energy + Delta-G solvation = -28310.333776 eV Core-core repulsion = 24164.600338 eV Total energy + Delta-G solvation = -4145.733438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58432 -40.83663 -40.26620 -38.60305 -38.16649 -34.78690 -34.66324 -34.15641 -33.75937 -31.95277 -30.93342 -29.89372 -27.81722 -27.25194 -25.43774 -24.30177 -23.61637 -22.37018 -21.59808 -20.78568 -20.22673 -19.48514 -18.80895 -18.71080 -18.07148 -17.76327 -17.04551 -16.46615 -16.40108 -16.20895 -15.97566 -15.77448 -15.59913 -15.41368 -15.05104 -14.71723 -14.64303 -14.32290 -14.21893 -14.07472 -13.88759 -13.59824 -13.42640 -13.28574 -13.24046 -12.99354 -12.72878 -12.55778 -12.21771 -12.10589 -12.06394 -11.98633 -11.68426 -11.20188 -11.16934 -11.12017 -10.89427 -10.61400 -10.57546 -9.87501 -9.74704 -8.66950 -8.51953 -6.17629 -0.25575 0.60429 1.12517 1.36533 1.45165 1.54010 1.55713 1.93561 2.15402 2.32627 2.60789 2.86845 3.19005 3.22153 3.41722 3.44159 3.75075 3.84647 3.95580 4.09714 4.14245 4.17174 4.27398 4.27614 4.32142 4.48384 4.49156 4.58150 4.65521 4.69956 4.78363 4.86743 4.95774 5.00879 5.03082 5.08739 5.20616 5.23869 5.33661 5.35262 5.40931 5.60918 5.65670 5.81466 5.92835 5.98313 6.11790 6.43730 6.47954 6.92869 7.13588 7.35511 7.70054 8.70163 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.001818 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.023832 B =15393.905029 C =16648.211451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 H 0.084 0.916 4 C 0.109 3.891 5 N -0.615 5.615 6 C 0.565 3.435 7 O -0.593 6.593 8 C -0.244 4.244 9 C 0.020 3.980 10 C -0.171 4.171 11 C -0.035 4.035 12 C -0.205 4.205 13 C 0.130 3.870 14 O -0.219 6.219 15 C -0.415 4.415 16 H 0.105 0.895 17 C -0.019 4.019 18 N -0.913 5.913 19 Si 1.017 2.983 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.250 4.250 24 C -0.040 4.040 25 C 0.109 3.891 26 C -0.117 4.117 27 H 0.137 0.863 28 C 0.532 3.468 29 N -0.835 5.835 30 O -0.583 6.583 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.275 0.725 41 H 0.123 0.877 42 H 0.142 0.858 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.419 0.581 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.178 12.403 1.534 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.359 3.641 7 O -0.476 6.476 8 C -0.264 4.264 9 C 0.000 4.000 10 C -0.172 4.172 11 C -0.052 4.052 12 C -0.224 4.224 13 C 0.078 3.922 14 O -0.124 6.124 15 C -0.491 4.491 16 H 0.122 0.878 17 C -0.217 4.217 18 N -0.550 5.550 19 Si 0.837 3.163 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.269 4.269 24 C -0.058 4.058 25 C -0.014 4.014 26 C -0.139 4.139 27 H 0.155 0.845 28 C 0.316 3.684 29 N -0.398 5.398 30 O -0.462 6.462 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.172 0.828 37 H 0.141 0.859 38 H 0.180 0.820 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.250 0.750 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.255 12.905 1.050 24.888 hybrid contribution 0.959 -0.757 -0.003 1.222 sum -20.295 12.148 1.047 23.676 Atomic orbital electron populations 1.21711 0.92309 1.02790 1.02641 1.22037 0.97629 0.98943 0.91252 0.89782 1.22113 0.87536 0.94514 0.97208 1.48267 1.30319 1.44275 1.11885 1.18265 0.82715 0.78249 0.84890 1.90789 1.72574 1.66124 1.18125 1.22699 0.97979 1.03557 1.02209 1.22181 0.89444 0.89449 0.98931 1.18751 0.99541 1.04175 0.94685 1.21282 0.94060 0.95980 0.93906 1.20433 0.98940 1.02744 1.00328 1.20214 0.87124 0.91976 0.92906 1.83883 1.37656 1.48824 1.42048 1.21918 1.16473 1.15334 0.95351 0.87757 1.26585 0.97310 0.99883 0.97962 1.70150 1.29467 1.40636 1.14722 0.84538 0.77687 0.76327 0.77768 1.17473 1.19385 1.19316 1.21195 1.02958 1.07635 0.95122 1.21309 0.92013 0.92747 0.99778 1.22434 0.95766 1.02857 0.80340 1.22627 0.98728 0.99715 0.92795 0.84503 1.20303 0.75555 0.87410 0.85123 1.43784 1.67079 1.16253 1.12728 1.90758 1.51527 1.18869 1.85089 0.91222 0.92285 0.91578 0.90931 0.92201 0.82816 0.85907 0.81963 0.85698 0.91610 0.85935 0.83984 0.86562 0.90467 0.74963 0.75989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.13 71.98 0.66 -0.81 16 2 C -0.08 -1.03 2.67 -9.60 -0.03 -1.06 16 3 H 0.08 1.40 7.39 -2.39 -0.02 1.38 16 4 C 0.11 1.81 6.46 86.73 0.56 2.37 16 5 N -0.62 -11.04 3.33 -817.02 -2.72 -13.76 16 6 C 0.56 13.89 7.77 86.33 0.67 14.56 16 7 O -0.59 -19.54 16.56 -4.41 -0.07 -19.61 16 8 C -0.24 -5.23 8.85 23.62 0.21 -5.02 16 9 C 0.02 0.50 9.45 23.82 0.23 0.73 16 10 C -0.17 -5.01 5.87 -20.13 -0.12 -5.12 16 11 C -0.03 -0.99 9.40 22.55 0.21 -0.78 16 12 C -0.21 -7.71 9.97 22.34 0.22 -7.49 16 13 C 0.13 5.98 6.66 22.72 0.15 6.13 16 14 O -0.22 -12.39 9.74 -20.28 -0.20 -12.58 16 15 C -0.42 -22.94 9.48 67.94 0.64 -22.30 16 16 H 0.11 5.29 5.18 -2.91 -0.02 5.28 16 17 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 18 N -0.91 -53.50 13.67 21.62 0.30 -53.20 16 19 Si 1.02 40.95 29.55 68.60 2.03 42.98 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.25 -10.19 9.14 22.34 0.20 -9.99 16 24 C -0.04 -1.32 9.78 22.55 0.22 -1.10 16 25 C 0.11 1.12 5.97 86.85 0.52 1.64 16 26 C -0.12 -1.08 2.88 -10.15 -0.03 -1.11 16 27 H 0.14 0.69 8.04 -2.39 -0.02 0.67 16 28 C 0.53 6.34 7.42 87.66 0.65 6.99 16 29 N -0.83 -3.89 8.87 -173.52 -1.54 -5.43 16 30 O -0.58 -12.47 16.55 -3.05 -0.05 -12.52 16 31 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 1.22 7.82 -2.39 -0.02 1.20 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.15 2.30 4.86 -2.91 -0.01 2.28 16 37 H 0.12 3.23 7.52 -2.91 -0.02 3.21 16 38 H 0.16 3.11 6.16 -2.91 -0.02 3.09 16 39 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.12 5.10 5.62 -2.91 -0.02 5.09 16 42 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.12 0.58 7.14 -2.39 -0.02 0.56 16 44 H 0.08 0.84 8.03 -2.38 -0.02 0.82 16 45 H 0.42 -0.50 8.83 -92.71 -0.82 -1.32 16 46 H 0.41 1.63 8.93 -92.71 -0.83 0.80 16 Total: -1.00 -79.38 388.51 2.59 -76.79 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.60 Total: 20.22 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 5.44 Total: -22.90 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -3.96 Total: -72.38 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.32 Total: -44.71 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -79.38 2.59 -76.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284574731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.629 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds