Wall clock time and date at job start Wed Apr 1 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99827 * 2 1 4 4 N 1.46500 * 109.46998 * 125.00562 * 3 2 1 5 5 C 1.46504 * 119.99651 * 269.99942 * 4 3 2 6 6 C 1.50701 * 109.46952 * 269.99813 * 5 4 3 7 7 H 1.07997 * 120.00328 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99755 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00024 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99776 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00068 * 10 8 6 12 12 H 1.48505 * 109.46966 * 209.99717 * 10 8 6 13 13 H 1.48495 * 109.47096 * 329.99365 * 10 8 6 14 14 C 1.34767 * 120.00230 * 89.99871 * 4 3 2 15 15 O 1.21286 * 120.00247 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00129 * 0.02562 * 14 4 3 17 17 N 1.46504 * 109.47238 * 179.97438 * 16 14 4 18 18 C 1.40219 * 120.50838 * 89.99847 * 17 16 14 19 19 C 1.38505 * 120.73405 * 15.52713 * 18 17 16 20 20 C 1.38285 * 119.80762 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.20277 * 359.97438 * 20 19 18 22 22 C 1.38315 * 120.25730 * 359.97438 * 21 20 19 23 23 C 1.38390 * 119.87554 * 359.97438 * 22 21 20 24 24 O 1.35985 * 120.67380 * 180.12968 * 23 22 21 25 25 C 1.42997 * 116.71878 * 147.16331 * 24 23 22 26 26 H 1.09000 * 109.41537 * 286.36285 * 25 24 23 27 27 C 1.53001 * 109.44341 * 166.44710 * 25 24 23 28 28 C 1.35086 * 120.51151 * 270.02366 * 17 16 14 29 29 O 1.21294 * 120.13484 * 1.61675 * 28 17 16 30 30 H 1.08008 * 120.00230 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99957 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00107 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46943 * 5.00453 * 3 2 1 34 34 H 1.09001 * 109.47242 * 245.00201 * 3 2 1 35 35 H 1.09004 * 109.47420 * 30.00104 * 5 4 3 36 36 H 1.08998 * 109.47182 * 150.00086 * 5 4 3 37 37 H 0.97006 * 120.00254 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.47170 * 59.99678 * 16 14 4 39 39 H 1.09004 * 109.46746 * 299.99823 * 16 14 4 40 40 H 1.08000 * 120.09724 * 0.05272 * 19 18 17 41 41 H 1.08003 * 119.89641 * 179.97438 * 20 19 18 42 42 H 1.07998 * 119.86937 * 180.27010 * 21 20 19 43 43 H 1.08005 * 120.05979 * 179.97438 * 22 21 20 44 44 H 1.08994 * 109.47188 * 299.82987 * 27 25 24 45 45 H 1.09005 * 109.47267 * 59.83551 * 27 25 24 46 46 H 1.09001 * 109.47220 * 179.83222 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5194 4.0664 3.6087 9 7 1.9600 3.4656 4.6361 10 14 2.8725 5.8994 3.6773 11 1 1.6991 6.6493 3.1615 12 1 3.1373 6.3002 5.0825 13 1 4.0619 6.2060 2.8427 14 6 4.2496 0.8662 0.9823 15 8 5.0197 0.8879 1.9190 16 6 4.6972 0.3184 -0.3484 17 7 6.0918 -0.1198 -0.2521 18 6 6.4004 -1.4348 0.1243 19 6 5.4306 -2.4234 0.1022 20 6 5.7559 -3.7139 0.4779 21 6 7.0451 -4.0190 0.8742 22 6 8.0182 -3.0363 0.8973 23 6 7.7005 -1.7427 0.5217 24 8 8.6450 -0.7645 0.5358 25 6 8.5280 0.2565 -0.4585 26 1 8.8217 -0.1463 -1.4278 27 6 9.4426 1.4281 -0.0955 28 6 7.1002 0.7370 -0.5240 29 8 6.8581 1.8874 -0.8226 30 1 -0.5401 0.9354 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 1.4887 1.6965 2.5460 36 1 3.0990 1.3602 3.2259 37 1 1.7311 3.9742 5.4298 38 1 4.6125 1.0954 -1.1082 39 1 4.0680 -0.5283 -0.6229 40 1 4.4234 -2.1872 -0.2078 41 1 5.0007 -4.4858 0.4616 42 1 7.2943 -5.0296 1.1623 43 1 9.0240 -3.2780 1.2078 44 1 9.1486 1.8320 0.8732 45 1 10.4750 1.0816 -0.0465 46 1 9.3560 2.2055 -0.8546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292549234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:40 Heat of formation + Delta-G solvation = -60.362263 kcal Electronic energy + Delta-G solvation = -30984.658549 eV Core-core repulsion = 26840.098559 eV Total energy + Delta-G solvation = -4144.559989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79241 -40.81576 -39.98217 -38.67955 -37.38569 -36.67097 -35.17217 -33.73190 -33.19129 -31.42712 -31.24094 -29.88627 -28.75517 -26.95870 -25.68369 -24.51058 -24.38567 -23.32117 -21.28707 -20.66497 -20.34566 -20.02869 -18.78520 -18.49029 -18.36526 -17.86705 -17.32712 -16.69263 -16.49029 -16.37107 -16.18573 -15.81598 -15.69873 -15.51798 -15.24746 -14.98195 -14.55705 -14.42509 -14.22231 -14.18406 -13.86019 -13.41730 -13.35286 -13.26113 -13.14430 -13.06666 -12.89144 -12.84537 -12.64253 -12.31860 -12.25624 -12.22126 -12.16487 -11.86174 -11.74555 -11.09889 -10.73538 -10.69971 -10.34043 -9.66788 -9.57921 -8.89987 -8.29098 -6.43506 0.05802 0.29713 1.02821 1.28926 1.29807 1.33061 1.37394 1.43460 1.62793 2.18523 2.28294 2.40973 2.71646 2.86671 3.00448 3.46966 3.58318 3.66689 3.78697 3.82645 3.94065 4.02555 4.06236 4.21595 4.27274 4.35133 4.36902 4.48131 4.57741 4.66121 4.75014 4.80480 4.91406 4.96114 5.04607 5.05928 5.14266 5.23412 5.29050 5.43798 5.51713 5.68292 5.70834 5.71453 5.78611 5.91875 5.99563 6.26340 6.49103 6.60601 6.66674 7.18630 7.33362 8.78137 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.003949 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.346852 B = 7088.348845 C = 8448.543660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.127 3.873 4 N -0.593 5.593 5 C 0.269 3.731 6 C -0.546 4.546 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.964 3.036 11 H -0.258 1.258 12 H -0.277 1.277 13 H -0.281 1.281 14 C 0.484 3.516 15 O -0.587 6.587 16 C 0.099 3.901 17 N -0.537 5.537 18 C 0.075 3.925 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.105 4.105 22 C -0.113 4.113 23 C 0.054 3.946 24 O -0.314 6.314 25 C 0.085 3.915 26 H 0.137 0.863 27 C -0.132 4.132 28 C 0.479 3.521 29 O -0.540 6.540 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.028 0.972 36 H -0.006 1.006 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.143 0.857 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.156 0.844 44 H 0.042 0.958 45 H 0.110 0.890 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 -17.734 -16.166 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.005 3.995 4 N -0.323 5.323 5 C 0.147 3.853 6 C -0.585 4.585 7 H 0.064 0.936 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.788 3.212 11 H -0.182 1.182 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.271 3.729 15 O -0.467 6.467 16 C -0.026 4.026 17 N -0.261 5.261 18 C -0.019 4.019 19 C -0.155 4.155 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.008 3.992 24 O -0.230 6.230 25 C 0.026 3.974 26 H 0.154 0.846 27 C -0.189 4.189 28 C 0.268 3.732 29 O -0.416 6.416 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.012 0.988 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.182 0.818 42 H 0.187 0.813 43 H 0.174 0.826 44 H 0.061 0.939 45 H 0.129 0.871 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.770 -16.938 -15.560 24.277 hybrid contribution -0.329 1.618 0.655 1.776 sum 7.441 -15.320 -14.905 22.632 Atomic orbital electron populations 1.24076 0.95496 1.03008 0.97580 1.23279 0.96835 0.97871 1.02509 1.20928 0.92789 0.97196 0.88581 1.48190 1.11303 1.59402 1.13441 1.18676 0.93997 0.92425 0.80169 1.21668 1.40816 0.94633 1.01383 0.93610 1.25796 0.94553 1.03628 0.94758 1.70036 1.42599 1.38032 1.05702 0.85478 0.78810 0.79358 0.77555 1.18237 1.20209 1.20584 1.21474 0.82024 0.78397 0.90987 1.90669 1.53965 1.58163 1.43953 1.21672 0.82253 1.03671 0.95003 1.45325 1.06436 1.10193 1.64109 1.18474 0.95142 0.84143 1.04095 1.20992 0.98683 0.92728 1.03095 1.21403 0.97914 0.95376 0.97780 1.21443 0.91988 1.00306 0.98590 1.20882 1.02435 0.88057 1.01793 1.19044 0.86128 0.90312 1.03693 1.86187 1.48666 1.34603 1.53504 1.22819 0.89909 0.90023 0.94618 0.84578 1.21750 0.99735 0.94670 1.02747 1.22296 0.89564 0.85461 0.75852 1.90722 1.85204 1.18073 1.47611 0.88576 0.86052 0.85974 0.90256 0.87980 0.95428 0.98794 0.92269 0.85772 0.83076 0.83947 0.81835 0.81321 0.82592 0.93908 0.87121 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 14.32 67.78 0.97 -2.66 16 2 C -0.19 -4.62 9.74 25.65 0.25 -4.37 16 3 C 0.13 4.02 5.65 85.63 0.48 4.50 16 4 N -0.59 -26.25 2.44 -830.50 -2.03 -28.27 16 5 C 0.27 15.08 5.16 85.63 0.44 15.53 16 6 C -0.55 -33.21 9.39 25.60 0.24 -32.97 16 7 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 8 C 0.01 0.72 5.46 84.66 0.46 1.19 16 9 N -0.92 -57.40 13.29 21.45 0.28 -57.12 16 10 Si 0.96 47.14 29.54 68.60 2.03 49.16 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 14 C 0.48 21.75 7.74 87.66 0.68 22.43 16 15 O -0.59 -33.38 16.01 -3.05 -0.05 -33.42 16 16 C 0.10 3.17 4.23 85.63 0.36 3.53 16 17 N -0.54 -17.94 2.21 -634.30 -1.40 -19.33 16 18 C 0.07 2.17 6.39 38.14 0.24 2.41 16 19 C -0.13 -3.00 9.36 22.34 0.21 -2.80 16 20 C -0.11 -1.73 10.04 22.29 0.22 -1.51 16 21 C -0.10 -1.59 10.04 22.30 0.22 -1.37 16 22 C -0.11 -2.27 10.00 22.32 0.22 -2.04 16 23 C 0.05 1.49 6.44 22.58 0.15 1.64 16 24 O -0.31 -9.18 10.09 -93.38 -0.94 -10.12 16 25 C 0.09 2.27 3.69 29.87 0.11 2.38 16 26 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 27 C -0.13 -3.18 9.14 71.98 0.66 -2.52 16 28 C 0.48 16.84 7.37 87.63 0.65 17.48 16 29 O -0.54 -22.26 15.83 -3.07 -0.05 -22.31 16 30 H 0.10 2.20 7.84 -2.91 -0.02 2.18 16 31 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.12 2.55 7.83 -2.91 -0.02 2.53 16 33 H 0.08 2.68 7.72 -2.39 -0.02 2.66 16 34 H 0.10 2.58 6.44 -2.39 -0.02 2.57 16 35 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 36 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 37 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 38 H 0.12 3.76 6.75 -2.39 -0.02 3.75 16 39 H 0.15 3.39 5.60 -2.38 -0.01 3.37 16 40 H 0.14 2.63 6.12 -2.91 -0.02 2.61 16 41 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.10 2.19 7.86 -2.39 -0.02 2.17 16 Total: -1.00 -89.09 389.31 5.41 -83.67 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.99 Total: 16.90 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.57 Total: 20.85 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.14 Total: -104.73 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -1.04 Total: -65.86 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -89.09 5.41 -83.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292549234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.310 kcal (2) G-P(sol) polarization free energy of solvation -89.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds