Wall clock time and date at job start Wed Apr 1 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 C 1.53001 * 109.46482 * 119.99286 * 2 1 3 5 5 H 1.08997 * 109.47663 * 294.39531 * 4 2 1 6 6 C 1.50699 * 109.46715 * 174.39762 * 4 2 1 7 7 O 1.21285 * 120.00143 * 252.26087 * 6 4 2 8 8 N 1.34778 * 120.00241 * 72.53360 * 6 4 2 9 9 C 1.46496 * 120.00292 * 183.22918 * 8 6 4 10 10 H 1.08999 * 109.47570 * 34.99951 * 9 8 6 11 11 C 1.52999 * 109.47215 * 275.00214 * 9 8 6 12 12 C 1.50704 * 109.47335 * 154.99952 * 9 8 6 13 13 H 1.08002 * 119.99760 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99822 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00122 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99562 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47465 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47138 * 119.99986 * 16 14 12 19 19 H 1.48501 * 109.47185 * 240.00048 * 16 14 12 20 20 N 1.46499 * 109.46823 * 54.40218 * 4 2 1 21 21 C 1.34526 * 124.46607 * 56.22683 * 20 4 2 22 22 O 1.21450 * 125.70461 * 0.03055 * 21 20 4 23 23 C 1.47806 * 108.58250 * 179.90393 * 21 20 4 24 24 C 1.38567 * 134.29756 * 180.09719 * 23 21 20 25 25 C 1.38615 * 119.71921 * 180.27046 * 24 23 21 26 26 C 1.38230 * 120.45775 * 0.02562 * 25 24 23 27 27 C 1.38606 * 120.46039 * 359.97438 * 26 25 24 28 28 C 1.38567 * 119.72361 * 359.97438 * 27 26 25 29 29 C 1.34526 * 124.45564 * 236.51971 * 20 4 2 30 30 O 1.21444 * 125.71180 * 359.97078 * 29 20 4 31 31 H 1.09006 * 109.46608 * 63.75922 * 1 2 3 32 32 H 1.08995 * 109.47401 * 183.75236 * 1 2 3 33 33 H 1.09000 * 109.47445 * 303.75714 * 1 2 3 34 34 H 1.09000 * 109.47320 * 239.99601 * 2 1 3 35 35 H 1.08998 * 109.47086 * 175.30659 * 3 2 1 36 36 H 1.09007 * 109.46963 * 295.30015 * 3 2 1 37 37 H 1.08997 * 109.47393 * 55.29833 * 3 2 1 38 38 H 0.97001 * 120.00018 * 3.22710 * 8 6 4 39 39 H 1.09000 * 109.46783 * 299.99773 * 11 9 8 40 40 H 1.08996 * 109.47442 * 59.99835 * 11 9 8 41 41 H 1.09006 * 109.47250 * 180.02562 * 11 9 8 42 42 H 0.97005 * 119.99332 * 180.02562 * 15 14 12 43 43 H 1.08001 * 120.14226 * 0.25434 * 24 23 21 44 44 H 1.08000 * 119.77327 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.77002 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.14169 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.7608 -0.1526 2.1365 6 6 3.5405 -0.8424 1.1821 7 8 4.0527 -1.9207 0.9677 8 7 4.3135 0.2463 1.3655 9 6 5.7685 0.1428 1.2302 10 1 6.0104 -0.5743 0.4457 11 6 6.3718 -0.3280 2.5550 12 6 6.3368 1.4914 0.8705 13 1 5.6797 2.3406 0.7539 14 6 7.6954 1.6409 0.6892 15 7 8.4954 0.6068 0.8306 16 14 8.3996 3.3125 0.2427 17 1 7.2981 4.3035 0.1443 18 1 9.3588 3.7418 1.2919 19 1 9.1019 3.2211 -1.0626 20 7 1.4445 -2.0579 1.3187 21 6 1.5355 -2.9831 0.3464 22 8 2.1157 -2.8449 -0.7115 23 6 0.8137 -4.1971 0.7824 24 6 0.5761 -5.4382 0.2140 25 6 -0.1664 -6.3810 0.9077 26 6 -0.6713 -6.0911 2.1614 27 6 -0.4417 -4.8538 2.7425 28 6 0.2998 -3.9018 2.0612 29 6 0.7301 -2.5198 2.3608 30 8 0.4807 -1.9045 3.3777 31 1 -0.3633 0.4544 -0.9218 32 1 -0.3634 -1.0254 0.0673 33 1 -0.3634 0.5710 0.8544 34 1 1.8934 -0.5139 -0.8899 35 1 3.1268 1.4437 0.0841 36 1 1.7471 1.9315 -0.9292 37 1 1.6096 1.9801 0.8448 38 1 3.9065 1.0984 1.5872 39 1 6.1300 0.3891 3.3395 40 1 5.9609 -1.3034 2.8152 41 1 7.4545 -0.4045 2.4545 42 1 9.4513 0.7122 0.7034 43 1 0.9675 -5.6700 -0.7656 44 1 -0.3518 -7.3488 0.4657 45 1 -1.2480 -6.8341 2.6923 46 1 -0.8382 -4.6329 3.7225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299643080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:33 Heat of formation + Delta-G solvation = -50.975462 kcal Electronic energy + Delta-G solvation = -31086.930831 eV Core-core repulsion = 26942.777884 eV Total energy + Delta-G solvation = -4144.152947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50658 -39.53034 -38.57710 -38.26065 -36.17390 -35.24797 -34.80112 -32.38430 -31.61250 -31.40041 -29.34683 -27.41104 -27.02831 -25.26260 -25.16743 -23.64809 -22.38837 -21.62167 -20.61674 -19.85393 -19.46730 -18.03435 -17.54864 -17.08223 -16.60047 -16.33366 -15.62643 -15.31463 -15.25414 -14.88251 -14.68743 -14.53240 -14.43046 -14.25848 -13.92568 -13.54910 -13.35219 -12.93121 -12.74003 -12.69949 -12.59373 -12.46355 -12.17862 -11.93796 -11.71469 -11.40457 -11.18576 -11.06744 -10.96436 -10.88331 -10.75212 -10.50885 -10.29941 -10.25066 -10.17757 -9.98523 -9.51293 -9.48387 -9.06635 -8.89645 -8.55459 -7.94905 -6.13119 -4.22676 -0.07145 0.70504 1.91780 2.21328 2.96625 3.19332 3.23604 3.31477 3.33960 3.36885 3.51610 3.96746 4.22816 4.34971 4.35928 4.55986 4.68818 4.76757 4.83916 4.94184 4.97573 5.09232 5.19240 5.21447 5.35424 5.45844 5.51298 5.55719 5.64803 5.69315 5.78438 5.83479 5.88106 5.89794 6.03405 6.25123 6.29865 6.39343 6.71687 6.81640 6.95426 7.13943 7.23444 7.40080 7.50594 7.65744 7.72878 7.89499 8.13072 8.57333 8.74331 9.01645 9.44550 10.92912 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.003068 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.702734 B = 9125.595609 C = 9613.674016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.164 4.164 4 C 0.125 3.875 5 H 0.123 0.877 6 C 0.496 3.504 7 O -0.534 6.534 8 N -0.701 5.701 9 C 0.265 3.735 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.555 5.555 21 C 0.577 3.423 22 O -0.435 6.435 23 C -0.128 4.128 24 C -0.049 4.049 25 C -0.097 4.097 26 C -0.102 4.102 27 C -0.047 4.047 28 C -0.139 4.139 29 C 0.577 3.423 30 O -0.469 6.469 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.391 0.609 39 H 0.027 0.973 40 H 0.014 0.986 41 H 0.091 0.909 42 H 0.264 0.736 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 -9.553 1.067 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.222 4.222 4 C 0.020 3.980 5 H 0.141 0.859 6 C 0.278 3.722 7 O -0.411 6.411 8 N -0.352 5.352 9 C 0.164 3.836 10 H 0.067 0.933 11 C -0.206 4.206 12 C -0.572 4.572 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.296 5.296 21 C 0.365 3.635 22 O -0.304 6.304 23 C -0.132 4.132 24 C -0.068 4.068 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.065 4.065 28 C -0.142 4.142 29 C 0.366 3.634 30 O -0.341 6.341 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.046 0.954 40 H 0.033 0.967 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.567 -9.873 0.846 22.829 hybrid contribution 0.392 1.268 0.005 1.327 sum -20.175 -8.605 0.850 21.950 Atomic orbital electron populations 1.21810 0.94286 1.01444 1.02414 1.21400 0.96421 0.97354 0.97063 1.22133 1.03744 0.93674 1.02628 1.21486 0.92961 0.81040 1.02518 0.85879 1.20232 0.87688 0.85731 0.78506 1.90699 1.74505 1.26990 1.48923 1.46707 1.10062 1.09873 1.68538 1.18793 0.72481 0.97552 0.94761 0.93302 1.22078 1.04345 0.96538 0.97633 1.21227 0.92608 0.94303 1.49015 0.91923 1.24888 0.96811 0.97122 0.94864 1.69917 1.04196 1.29483 1.48369 0.86389 0.79084 0.83485 0.78115 1.19673 1.20889 1.20874 1.46142 1.49296 1.15517 1.18663 1.18149 0.78941 0.83113 0.83345 1.90802 1.37481 1.80071 1.22007 1.20687 1.00587 0.95784 0.96099 1.20822 0.95432 0.90272 1.00251 1.21448 0.96006 0.99381 0.94635 1.21418 0.98995 0.96207 0.95407 1.20780 0.94692 0.91456 0.99615 1.20580 1.02019 0.95137 0.96481 1.18336 0.76807 0.86189 0.82100 1.90787 1.54063 1.63762 1.25531 0.91738 0.93477 0.92176 0.88744 0.89816 0.91469 0.92134 0.77398 0.95415 0.96699 0.89074 0.92609 0.84012 0.84178 0.84208 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.04 37.16 0.34 -1.31 16 2 C -0.10 -1.46 2.20 -90.62 -0.20 -1.66 16 3 C -0.16 -2.12 8.57 37.16 0.32 -1.80 16 4 C 0.13 2.05 2.20 -69.08 -0.15 1.90 16 5 H 0.12 1.82 7.59 -51.93 -0.39 1.43 16 6 C 0.50 10.39 6.76 -10.99 -0.07 10.31 16 7 O -0.53 -13.35 14.44 -10.42 -0.15 -13.50 16 8 N -0.70 -14.80 3.83 -54.93 -0.21 -15.01 16 9 C 0.27 6.82 2.53 -69.08 -0.17 6.65 16 10 H 0.05 1.46 7.63 -51.93 -0.40 1.06 16 11 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 12 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.00 11.32 55.43 0.63 -24.38 16 16 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 N -0.56 -9.01 1.42 -111.75 -0.16 -9.17 16 21 C 0.58 9.59 6.25 -12.46 -0.08 9.51 16 22 O -0.44 -8.45 15.39 -10.57 -0.16 -8.61 16 23 C -0.13 -1.66 6.40 -104.84 -0.67 -2.33 16 24 C -0.05 -0.47 10.09 -39.32 -0.40 -0.87 16 25 C -0.10 -0.64 10.04 -39.44 -0.40 -1.04 16 26 C -0.10 -0.65 10.03 -39.45 -0.40 -1.05 16 27 C -0.05 -0.41 10.09 -39.32 -0.40 -0.81 16 28 C -0.14 -1.71 6.41 -104.83 -0.67 -2.38 16 29 C 0.58 8.72 8.02 -12.46 -0.10 8.62 16 30 O -0.47 -7.74 17.44 5.41 0.09 -7.65 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.57 6.98 -51.93 -0.36 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.57 6.80 -51.93 -0.35 1.21 16 35 H 0.08 1.30 5.07 -51.93 -0.26 1.03 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.39 7.10 6.62 -40.82 -0.27 6.83 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 46 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -34.15 380.52 -8.47 -42.62 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.12 Total: 6.64 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -3.10 Total: 7.68 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.26 Total: -48.56 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.22 Total: -29.76 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.15 -8.47 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.353 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds