Wall clock time and date at job start Wed Apr 1 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47387 * 2 1 4 4 C 1.52995 * 109.47063 * 120.00340 * 2 1 3 5 5 H 1.09007 * 109.47488 * 63.19857 * 4 2 1 6 6 C 1.50697 * 109.47167 * 183.19974 * 4 2 1 7 7 O 1.21280 * 119.99928 * 120.00175 * 6 4 2 8 8 N 1.34778 * 120.00522 * 300.00003 * 6 4 2 9 9 C 1.46494 * 120.00634 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.46781 * 325.00511 * 9 8 6 11 11 C 1.52994 * 109.47273 * 84.99808 * 9 8 6 12 12 C 1.50699 * 109.47189 * 205.00096 * 9 8 6 13 13 H 1.07995 * 119.99921 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99721 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00094 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 119.99676 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47572 * 60.00224 * 16 14 12 18 18 H 1.48509 * 109.46820 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47226 * 299.99611 * 16 14 12 20 20 N 1.46501 * 109.47107 * 303.20494 * 4 2 1 21 21 C 1.34520 * 124.46515 * 111.99327 * 20 4 2 22 22 O 1.21448 * 125.70672 * 359.97438 * 21 20 4 23 23 C 1.47816 * 108.58332 * 180.02562 * 21 20 4 24 24 C 1.38562 * 134.29920 * 179.97438 * 23 21 20 25 25 C 1.38612 * 119.71852 * 180.02562 * 24 23 21 26 26 C 1.38234 * 120.45935 * 0.02562 * 25 24 23 27 27 C 1.38604 * 120.45796 * 359.97438 * 26 25 24 28 28 C 1.38568 * 119.72297 * 0.02562 * 27 26 25 29 29 C 1.34524 * 124.45636 * 292.00868 * 20 4 2 30 30 O 1.21453 * 125.70941 * 359.96389 * 29 20 4 31 31 H 1.08993 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46763 * 300.00064 * 1 2 3 33 33 H 1.09002 * 109.46880 * 59.99730 * 1 2 3 34 34 H 1.08998 * 109.46763 * 239.99936 * 2 1 3 35 35 H 1.09000 * 109.46639 * 166.11693 * 3 2 1 36 36 H 1.08999 * 109.46793 * 286.11143 * 3 2 1 37 37 H 1.08994 * 109.47351 * 46.11291 * 3 2 1 38 38 H 0.97007 * 119.99592 * 0.02562 * 8 6 4 39 39 H 1.09004 * 109.47699 * 300.00650 * 11 9 8 40 40 H 1.09004 * 109.47215 * 59.99868 * 11 9 8 41 41 H 1.09000 * 109.47789 * 180.02562 * 11 9 8 42 42 H 0.96998 * 119.99994 * 179.97438 * 15 14 12 43 43 H 1.07999 * 120.14146 * 0.04693 * 24 23 21 44 44 H 1.07998 * 119.76916 * 180.27990 * 25 24 23 45 45 H 1.07998 * 119.77201 * 179.97438 * 26 25 24 46 46 H 1.08008 * 120.13842 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7242 -1.7643 1.2209 6 6 3.5449 -0.6530 1.2895 7 8 4.1028 -0.1186 2.2243 8 7 4.2708 -1.1859 0.2867 9 6 5.7337 -1.1190 0.3256 10 1 6.0424 -0.1804 0.7861 11 6 6.2763 -2.2915 1.1450 12 6 6.2775 -1.1928 -1.0779 13 1 5.6010 -1.2811 -1.9151 14 6 7.6386 -1.1475 -1.2931 15 7 8.4624 -1.0394 -0.2736 16 14 8.3126 -1.2382 -3.0329 17 1 7.7857 -0.1001 -3.8279 18 1 9.7956 -1.1706 -2.9934 19 1 7.8925 -2.5169 -3.6604 20 7 1.4896 -0.0768 2.4441 21 6 0.5944 -0.6453 3.2717 22 8 0.1212 -1.7570 3.1484 23 6 0.2820 0.3099 4.3557 24 6 -0.5487 0.2778 5.4642 25 6 -0.6122 1.3763 6.3073 26 6 0.1465 2.5026 6.0492 27 6 0.9818 2.5489 4.9441 28 6 1.0557 1.4583 4.0925 29 6 1.8128 1.1617 2.8581 30 8 2.5954 1.9109 2.3092 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1018 1.4523 0.2466 36 1 1.8923 1.8800 -0.9873 37 1 1.4896 2.0225 0.7406 38 1 3.8246 -1.6130 -0.4612 39 1 5.8830 -2.2383 2.1603 40 1 5.9676 -3.2302 0.6847 41 1 7.3647 -2.2416 1.1744 42 1 9.4199 -1.0080 -0.4250 43 1 -1.1438 -0.5994 5.6708 44 1 -1.2560 1.3504 7.1741 45 1 0.0881 3.3523 6.7132 46 1 1.5727 3.4314 4.7475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299643082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:36 Heat of formation + Delta-G solvation = -66.814377 kcal Electronic energy + Delta-G solvation = -31317.276472 eV Core-core repulsion = 27172.436699 eV Total energy + Delta-G solvation = -4144.839774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67382 -40.91955 -39.74027 -39.34170 -37.39366 -36.73792 -36.26484 -34.31569 -32.40508 -32.09110 -31.18378 -28.67699 -28.21829 -27.37226 -26.14777 -24.75912 -23.32485 -23.12982 -22.04201 -21.38988 -20.41680 -19.29250 -18.84080 -18.23097 -18.09198 -17.45215 -17.03441 -16.89827 -16.47735 -16.20500 -15.99919 -15.63798 -15.53225 -15.37340 -15.12303 -15.01358 -14.82149 -14.47157 -14.24944 -13.73900 -13.69204 -13.51733 -13.31064 -13.12861 -13.00316 -12.91685 -12.78056 -12.57610 -12.46488 -12.30992 -12.21018 -12.13698 -11.97924 -11.58625 -11.34941 -11.16434 -11.03399 -10.64288 -10.48444 -10.18866 -10.15393 -9.84261 -8.19781 -6.37746 -0.95450 0.01521 1.03901 1.11641 1.43222 1.45902 1.53449 1.60887 1.85444 2.29230 2.46035 2.62918 2.71536 3.10693 3.25523 3.49022 3.56527 3.62769 3.70090 3.96937 4.07792 4.17792 4.20322 4.25506 4.34381 4.47409 4.51615 4.64948 4.68994 4.81597 4.84680 4.85522 4.87705 4.96881 5.03006 5.03860 5.19878 5.23481 5.28170 5.32855 5.38272 5.54581 5.58702 5.62286 5.73125 5.83905 6.04447 6.15706 6.58549 6.68461 6.82922 7.26866 7.42821 8.86727 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003071 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.631362 B = 9114.976476 C = 9425.295961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.142 4.142 4 C 0.128 3.872 5 H 0.142 0.858 6 C 0.498 3.502 7 O -0.579 6.579 8 N -0.696 5.696 9 C 0.277 3.723 10 H -0.006 1.006 11 C -0.133 4.133 12 C -0.546 4.546 13 H 0.076 0.924 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.974 3.026 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.261 1.261 20 N -0.560 5.560 21 C 0.574 3.426 22 O -0.492 6.492 23 C -0.161 4.161 24 C -0.042 4.042 25 C -0.083 4.083 26 C -0.080 4.080 27 C -0.055 4.055 28 C -0.157 4.157 29 C 0.560 3.440 30 O -0.465 6.465 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.406 0.594 39 H 0.006 0.994 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.266 0.734 43 H 0.160 0.840 44 H 0.186 0.814 45 H 0.181 0.819 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.100 4.946 9.850 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.199 4.199 4 C 0.023 3.977 5 H 0.159 0.841 6 C 0.283 3.717 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.174 3.826 10 H 0.012 0.988 11 C -0.192 4.192 12 C -0.584 4.584 13 H 0.094 0.906 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.186 1.186 20 N -0.301 5.301 21 C 0.366 3.634 22 O -0.366 6.366 23 C -0.164 4.164 24 C -0.060 4.060 25 C -0.101 4.101 26 C -0.098 4.098 27 C -0.074 4.074 28 C -0.161 4.161 29 C 0.350 3.650 30 O -0.336 6.336 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.241 0.759 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.178 0.822 44 H 0.203 0.797 45 H 0.198 0.802 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.268 5.107 10.102 25.875 hybrid contribution 1.243 -0.329 -1.228 1.778 sum -22.025 4.778 8.874 24.221 Atomic orbital electron populations 1.21756 0.91817 1.03084 1.02440 1.21588 0.98434 0.96636 0.94981 1.22124 1.00413 0.95587 1.01759 1.21492 0.89974 1.00706 0.85555 0.84063 1.20853 0.89807 0.78221 0.82850 1.90675 1.73521 1.45645 1.36022 1.46131 1.08334 1.57360 1.22706 1.18307 0.75035 0.93464 0.95812 0.98848 1.21904 1.02835 0.98580 0.95874 1.21493 0.92696 1.52324 0.91915 0.90555 1.25835 0.97073 0.94041 1.01699 1.70056 1.03555 1.49691 1.32418 0.85364 0.76820 0.79214 0.78750 1.19555 1.21213 1.18602 1.46234 1.41047 1.17017 1.25823 1.18758 0.77017 0.85840 0.81796 1.90751 1.52451 1.19162 1.74251 1.20532 1.02833 0.94359 0.98698 1.21198 0.94356 1.00498 0.89959 1.21971 0.97943 0.90963 0.99226 1.21941 0.92750 1.00008 0.95075 1.21136 0.97326 0.96287 0.92663 1.20620 1.00349 0.98121 0.96996 1.18753 0.80750 0.80655 0.84855 1.90831 1.31519 1.51911 1.59312 0.90949 0.94201 0.89731 0.86845 0.94907 0.91298 0.92743 0.75851 0.97453 0.93763 0.91349 0.92534 0.82194 0.79691 0.80153 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.95 71.98 0.64 -2.18 16 2 C -0.10 -2.64 2.72 -10.80 -0.03 -2.67 16 3 C -0.14 -4.61 7.36 71.98 0.53 -4.08 16 4 C 0.13 4.22 2.62 44.24 0.12 4.33 16 5 H 0.14 4.11 7.61 -2.38 -0.02 4.09 16 6 C 0.50 21.61 5.24 87.66 0.46 22.07 16 7 O -0.58 -30.68 13.77 17.49 0.24 -30.44 16 8 N -0.70 -30.31 4.97 -446.12 -2.22 -32.53 16 9 C 0.28 14.95 2.56 44.24 0.11 15.06 16 10 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 11 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 12 C -0.55 -29.51 8.73 25.60 0.22 -29.28 16 13 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 14 C 0.01 0.74 5.30 84.66 0.45 1.19 16 15 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 16 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 N -0.56 -18.56 1.53 -744.38 -1.14 -19.69 16 21 C 0.57 17.24 7.79 86.82 0.68 17.91 16 22 O -0.49 -15.76 17.45 -3.55 -0.06 -15.82 16 23 C -0.16 -3.83 6.40 -20.00 -0.13 -3.96 16 24 C -0.04 -0.60 10.09 22.44 0.23 -0.37 16 25 C -0.08 -0.65 10.04 22.36 0.22 -0.43 16 26 C -0.08 -0.75 10.04 22.36 0.22 -0.52 16 27 C -0.06 -1.01 10.09 22.44 0.23 -0.78 16 28 C -0.16 -4.14 6.41 -20.00 -0.13 -4.27 16 29 C 0.56 19.62 5.80 86.82 0.50 20.12 16 30 O -0.46 -19.43 11.74 16.96 0.20 -19.23 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.92 7.32 -2.39 -0.02 0.90 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 2.67 7.66 -2.39 -0.02 2.65 16 35 H 0.03 1.36 5.75 -2.39 -0.01 1.35 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.80 5.46 -2.39 -0.01 1.79 16 38 H 0.41 14.63 8.01 -92.70 -0.74 13.89 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 42 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -81.12 375.49 4.57 -76.55 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.28 Total: 24.52 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 5.00 Total: 25.76 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -3.11 Total: -106.06 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: 0.38 Total: -65.49 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -81.12 4.57 -76.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.735 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds