Wall clock time and date at job start Wed Apr 1 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53001 * 109.46807 * 119.99686 * 2 1 3 5 5 H 1.09003 * 109.47084 * 306.10092 * 4 2 1 6 6 C 1.50702 * 109.47317 * 66.10110 * 4 2 1 7 7 O 1.21284 * 119.99713 * 108.00247 * 6 4 2 8 8 N 1.34774 * 120.00138 * 288.00506 * 6 4 2 9 9 C 1.46498 * 119.99876 * 175.50887 * 8 6 4 10 10 H 1.08996 * 109.47674 * 34.99674 * 9 8 6 11 11 C 1.53005 * 109.47042 * 274.99616 * 9 8 6 12 12 C 1.50701 * 109.47099 * 155.00203 * 9 8 6 13 13 H 1.08005 * 119.99742 * 359.97438 * 12 9 8 14 14 C 1.37870 * 120.00179 * 179.97438 * 12 9 8 15 15 N 1.31523 * 120.00121 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00231 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47051 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47224 * 119.99878 * 16 14 12 19 19 H 1.48499 * 109.47271 * 239.99726 * 16 14 12 20 20 N 1.46504 * 109.47041 * 186.09991 * 4 2 1 21 21 C 1.34520 * 124.46168 * 299.97819 * 20 4 2 22 22 O 1.21449 * 125.71078 * 359.97438 * 21 20 4 23 23 C 1.47812 * 108.57868 * 180.02562 * 21 20 4 24 24 C 1.38573 * 134.29848 * 179.97438 * 23 21 20 25 25 C 1.38601 * 119.72101 * 180.02562 * 24 23 21 26 26 C 1.38228 * 120.46123 * 359.97438 * 25 24 23 27 27 C 1.38614 * 120.46006 * 0.02562 * 26 25 24 28 28 C 1.38566 * 119.71690 * 359.97438 * 27 26 25 29 29 C 1.34525 * 124.45574 * 119.99759 * 20 4 2 30 30 O 1.21446 * 125.71668 * 359.96204 * 29 20 4 31 31 H 1.08995 * 109.47560 * 307.40798 * 1 2 3 32 32 H 1.09000 * 109.47395 * 67.41293 * 1 2 3 33 33 H 1.09008 * 109.47056 * 187.40451 * 1 2 3 34 34 H 1.08995 * 109.47181 * 239.99621 * 2 1 3 35 35 H 1.08998 * 109.46860 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.46984 * 299.99854 * 3 2 1 37 37 H 1.09001 * 109.47202 * 59.99426 * 3 2 1 38 38 H 0.97004 * 119.99926 * 355.50925 * 8 6 4 39 39 H 1.08999 * 109.46957 * 59.99761 * 11 9 8 40 40 H 1.08992 * 109.47282 * 180.02562 * 11 9 8 41 41 H 1.09003 * 109.46976 * 300.00894 * 11 9 8 42 42 H 0.97001 * 119.99837 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.13601 * 0.04652 * 24 23 21 44 44 H 1.07998 * 119.77030 * 180.27333 * 25 24 23 45 45 H 1.08002 * 119.77225 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.14272 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5901 -0.2742 2.1359 6 6 1.6647 -2.1789 1.1762 7 8 2.5181 -3.0150 0.9676 8 7 0.3807 -2.5534 1.3427 9 6 -0.0003 -3.9580 1.1743 10 1 0.8071 -4.5985 1.5291 11 6 -0.2630 -4.2412 -0.3061 12 6 -1.2499 -4.2381 1.9688 13 1 -1.7136 -3.4490 2.5421 14 6 -1.8011 -5.5018 1.9637 15 7 -1.2367 -6.4627 1.2652 16 14 -3.3496 -5.8493 2.9490 17 1 -3.7840 -4.6098 3.6419 18 1 -4.4260 -6.3076 2.0342 19 1 -3.0703 -6.9067 3.9536 20 7 3.4976 -0.5954 1.3250 21 6 4.3502 -1.0465 0.3874 22 8 4.0385 -1.6142 -0.6400 23 6 5.7301 -0.7366 0.8175 24 6 6.9855 -0.9549 0.2730 25 6 8.1139 -0.5260 0.9541 26 6 7.9951 0.1178 2.1715 27 6 6.7459 0.3430 2.7283 28 6 5.6090 -0.0801 2.0588 29 6 4.1596 -0.0139 2.3415 30 8 3.6515 0.4829 3.3264 31 1 -0.3634 0.6242 0.8162 32 1 -0.3634 0.3947 -0.9488 33 1 -0.3633 -1.0192 0.1324 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 -0.2911 -1.8930 1.5739 39 1 0.6407 -4.0385 -0.8808 40 1 -0.5469 -5.2860 -0.4313 41 1 -1.0704 -3.6005 -0.6609 42 1 -1.6248 -7.3517 1.2614 43 1 7.0842 -1.4567 -0.6782 44 1 9.0925 -0.6918 0.5284 45 1 8.8819 0.4469 2.6928 46 1 6.6591 0.8469 3.6796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299643086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:41 Heat of formation + Delta-G solvation = -50.041997 kcal Electronic energy + Delta-G solvation = -31102.620681 eV Core-core repulsion = 26958.508212 eV Total energy + Delta-G solvation = -4144.112469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49501 -39.53646 -38.56807 -38.23699 -36.18123 -35.24677 -34.79990 -32.38551 -31.61018 -31.39340 -29.33392 -27.39827 -27.08441 -25.25850 -25.15614 -23.64776 -22.36718 -21.62290 -20.64394 -19.86410 -19.45390 -18.03747 -17.52895 -17.06509 -16.56472 -16.33580 -15.69024 -15.27322 -15.23119 -14.91627 -14.64969 -14.52131 -14.43917 -14.25066 -13.89807 -13.56250 -13.43287 -12.93331 -12.75356 -12.65239 -12.58049 -12.38724 -12.18624 -11.96986 -11.83219 -11.38642 -11.18056 -11.09450 -10.96700 -10.91254 -10.67972 -10.51024 -10.31745 -10.24680 -10.18284 -9.97077 -9.50567 -9.47420 -9.03588 -8.90430 -8.56536 -7.93539 -6.12821 -4.22386 -0.06094 0.71176 1.92901 2.22135 2.97732 3.19867 3.23879 3.31537 3.34288 3.37743 3.52199 3.96293 4.23743 4.35769 4.36653 4.56526 4.67637 4.77042 4.82462 4.94708 4.96429 5.09099 5.19636 5.21045 5.33231 5.46030 5.50758 5.55323 5.62201 5.69640 5.77162 5.82814 5.87334 5.88821 6.00382 6.21934 6.30315 6.33159 6.72347 6.82082 6.96339 7.14023 7.24827 7.40543 7.51115 7.66403 7.74413 7.90179 8.13668 8.57459 8.75021 9.01950 9.44874 10.93105 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003080 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.820800 B = 9087.442894 C = 9447.713060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.142 4.142 4 C 0.125 3.875 5 H 0.124 0.876 6 C 0.496 3.504 7 O -0.532 6.532 8 N -0.702 5.702 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.146 4.146 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.556 5.556 21 C 0.576 3.424 22 O -0.432 6.432 23 C -0.128 4.128 24 C -0.049 4.049 25 C -0.097 4.097 26 C -0.102 4.102 27 C -0.047 4.047 28 C -0.139 4.139 29 C 0.576 3.424 30 O -0.469 6.469 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.391 0.609 39 H 0.015 0.985 40 H 0.091 0.909 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 17.474 -1.257 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.121 4.121 3 C -0.200 4.200 4 C 0.019 3.981 5 H 0.142 0.858 6 C 0.279 3.721 7 O -0.409 6.409 8 N -0.352 5.352 9 C 0.163 3.837 10 H 0.067 0.933 11 C -0.205 4.205 12 C -0.572 4.572 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.297 5.297 21 C 0.363 3.637 22 O -0.300 6.300 23 C -0.131 4.131 24 C -0.068 4.068 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.065 4.065 28 C -0.142 4.142 29 C 0.366 3.634 30 O -0.341 6.341 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.611 16.568 -1.514 22.815 hybrid contribution -1.201 -0.060 0.696 1.390 sum 14.410 16.508 -0.818 21.928 Atomic orbital electron populations 1.22138 0.93014 1.04285 1.02735 1.21376 0.97443 0.96283 0.96994 1.21808 1.00575 0.95157 1.02429 1.21487 0.77420 0.96714 1.02437 0.85835 1.20210 0.84290 0.89098 0.78551 1.90706 1.48974 1.52439 1.48788 1.46713 1.07047 1.13154 1.68325 1.18794 0.96019 0.75482 0.93409 0.93298 1.22078 0.97340 1.04016 0.97053 1.21237 1.10021 0.96329 1.29622 0.91973 1.24888 0.97534 0.95872 0.95396 1.69920 1.39777 1.02243 1.40043 0.86389 0.82534 0.78391 0.79761 1.19690 1.20859 1.20881 1.46151 1.07872 1.54152 1.21533 1.18143 0.85185 0.77341 0.83010 1.90807 1.82110 1.34029 1.23081 1.20699 0.94463 1.01423 0.96550 1.20817 0.89522 0.96469 0.99999 1.21441 0.98709 0.96552 0.94766 1.21418 0.97226 0.97780 0.95629 1.20781 0.90031 0.96408 0.99322 1.20582 0.93842 1.02854 0.96965 1.18334 0.86979 0.76510 0.81617 1.90789 1.74938 1.41557 1.26858 0.92008 0.91495 0.90073 0.89018 0.93420 0.91727 0.92144 0.77368 0.96598 0.89074 0.95373 0.92614 0.84028 0.84192 0.84218 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.72 37.16 0.32 -1.71 16 2 C -0.10 -1.41 2.26 -90.62 -0.20 -1.62 16 3 C -0.14 -1.62 8.96 37.16 0.33 -1.29 16 4 C 0.12 2.04 2.20 -69.08 -0.15 1.88 16 5 H 0.12 1.84 7.58 -51.93 -0.39 1.45 16 6 C 0.50 10.38 6.76 -10.99 -0.07 10.31 16 7 O -0.53 -13.31 14.00 -14.06 -0.20 -13.51 16 8 N -0.70 -14.81 3.82 -54.93 -0.21 -15.02 16 9 C 0.26 6.80 2.60 -69.08 -0.18 6.62 16 10 H 0.05 1.47 7.52 -51.93 -0.39 1.08 16 11 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 12 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 16 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 N -0.56 -9.02 1.44 -111.74 -0.16 -9.18 16 21 C 0.58 9.60 6.42 -12.46 -0.08 9.52 16 22 O -0.43 -8.44 15.27 -14.20 -0.22 -8.66 16 23 C -0.13 -1.66 6.41 -104.83 -0.67 -2.34 16 24 C -0.05 -0.48 10.09 -39.32 -0.40 -0.87 16 25 C -0.10 -0.65 10.03 -39.45 -0.40 -1.04 16 26 C -0.10 -0.66 10.04 -39.45 -0.40 -1.05 16 27 C -0.05 -0.41 10.09 -39.32 -0.40 -0.81 16 28 C -0.14 -1.72 6.41 -104.83 -0.67 -2.39 16 29 C 0.58 8.72 8.02 -12.45 -0.10 8.62 16 30 O -0.47 -7.75 17.43 5.41 0.09 -7.65 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.20 4.85 -51.92 -0.25 0.94 16 34 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 35 H 0.05 0.56 7.22 -51.93 -0.38 0.19 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 7.11 6.58 -40.82 -0.27 6.84 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -34.29 380.43 -8.59 -42.88 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.13 Total: 6.38 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -3.11 Total: 7.71 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.26 Total: -48.62 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.32 Total: -29.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.29 -8.59 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.161 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds