Wall clock time and date at job start Wed Apr 1 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47463 * 2 1 4 4 C 1.50703 * 109.47476 * 239.99977 * 2 1 3 5 5 H 1.07994 * 120.00231 * 239.99926 * 4 2 1 6 6 C 1.37878 * 119.99672 * 59.99804 * 4 2 1 7 7 N 1.31517 * 120.00305 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47154 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47068 * 300.00082 * 8 6 4 11 11 H 1.48501 * 109.46977 * 60.00194 * 8 6 4 12 12 N 1.46502 * 109.47521 * 119.99969 * 2 1 3 13 13 C 1.46507 * 119.99719 * 60.00069 * 12 2 1 14 14 C 1.34774 * 120.00552 * 240.00542 * 12 2 1 15 15 O 1.21559 * 119.99490 * 355.46472 * 14 12 2 16 16 C 1.47838 * 120.00310 * 175.46759 * 14 12 2 17 17 C 1.39578 * 120.14543 * 221.14736 * 16 14 12 18 18 C 1.37960 * 119.84886 * 179.74918 * 17 16 14 19 19 C 1.38358 * 120.14956 * 0.52795 * 18 17 16 20 20 C 1.50701 * 119.85600 * 179.76704 * 19 18 17 21 21 N 1.46503 * 109.46876 * 269.98015 * 20 19 18 22 22 C 1.33873 * 122.76209 * 269.70980 * 21 20 19 23 23 O 1.21224 * 125.39847 * 359.97438 * 22 21 20 24 24 C 1.51323 * 109.20356 * 179.84482 * 22 21 20 25 25 C 1.54223 * 103.55698 * 0.38586 * 24 22 21 26 26 C 1.33878 * 122.76095 * 90.00139 * 21 20 19 27 27 O 1.21227 * 125.39631 * 359.97424 * 26 21 20 28 28 C 1.38356 * 120.28884 * 359.74978 * 19 18 17 29 29 C 1.37959 * 120.14835 * 359.97200 * 28 19 18 30 30 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47224 * 299.99797 * 1 2 3 32 32 H 1.09003 * 109.47310 * 60.00228 * 1 2 3 33 33 H 0.96996 * 120.00463 * 180.02562 * 7 6 4 34 34 H 1.08990 * 109.47339 * 95.17506 * 13 12 2 35 35 H 1.09004 * 109.46742 * 215.17994 * 13 12 2 36 36 H 1.08998 * 109.47006 * 335.17464 * 13 12 2 37 37 H 1.07996 * 120.07476 * 0.02562 * 17 16 14 38 38 H 1.08006 * 119.92050 * 180.27860 * 18 17 16 39 39 H 1.08993 * 109.46690 * 29.97885 * 20 19 18 40 40 H 1.08991 * 109.47173 * 149.98527 * 20 19 18 41 41 H 1.09000 * 110.79356 * 241.77200 * 24 22 21 42 42 H 1.09002 * 110.41435 * 118.81275 * 24 22 21 43 43 H 1.08997 * 110.60797 * 241.26238 * 25 24 22 44 44 H 1.09002 * 110.61122 * 118.29218 * 25 24 22 45 45 H 1.08006 * 119.92527 * 179.97438 * 28 19 18 46 46 H 1.08007 * 120.07377 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -0.4205 -5.2204 10 1 3.8064 -1.1208 -4.0082 11 1 1.8258 -2.5201 -4.0078 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0933 1.4280 14 6 2.7931 -0.0357 2.0834 15 8 3.1548 1.1014 1.8513 16 6 3.2032 -0.7001 3.3388 17 6 3.2056 0.0110 4.5398 18 6 3.5844 -0.6165 5.7086 19 6 3.9718 -1.9446 5.6902 20 6 4.3893 -2.6221 6.9699 21 7 5.8325 -2.4575 7.1612 22 6 6.7298 -3.3347 6.6948 23 8 6.4692 -4.3437 6.0755 24 6 8.1212 -2.8653 7.0603 25 6 7.8691 -1.5562 7.8356 26 6 6.3621 -1.4204 7.8218 27 8 5.7339 -0.5157 8.3282 28 6 3.9772 -2.6536 4.5021 29 6 3.5952 -2.0397 3.3272 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7088 1.1614 -3.4844 34 1 2.4609 -2.7357 1.0526 35 1 1.5338 -2.2631 2.4967 36 1 0.7353 -2.3244 0.9071 37 1 2.9073 1.0489 4.5549 38 1 3.5824 -0.0686 6.6393 39 1 3.8580 -2.1728 7.8089 40 1 4.1491 -3.6838 6.9142 41 1 8.7125 -2.6732 6.1650 42 1 8.6150 -3.5993 7.6972 43 1 8.3349 -0.7128 7.3260 44 1 8.2374 -1.6388 8.8582 45 1 4.2810 -3.6900 4.4944 46 1 3.5994 -2.5944 2.4004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349322435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:59 Heat of formation + Delta-G solvation = -83.886667 kcal Electronic energy + Delta-G solvation = -29752.895285 eV Core-core repulsion = 25607.315201 eV Total energy + Delta-G solvation = -4145.580084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86595 -41.38801 -39.59266 -39.56665 -37.26637 -36.89241 -35.25882 -34.67217 -32.54607 -32.11235 -30.98014 -28.07963 -27.63731 -27.30192 -27.05907 -24.32546 -23.86965 -23.07599 -22.45102 -20.51747 -20.46682 -18.64852 -18.37744 -18.22157 -18.06849 -17.52798 -17.35110 -16.66646 -16.49164 -16.35843 -15.80265 -15.64522 -15.39585 -15.22849 -14.86289 -14.83565 -14.61176 -14.53451 -14.25069 -14.06680 -13.83208 -13.51478 -13.43961 -13.27832 -13.08959 -12.99070 -12.89105 -12.74785 -12.65870 -12.23132 -12.16571 -12.08766 -12.00800 -11.68759 -11.23741 -11.03583 -10.99227 -10.76736 -10.54438 -10.05728 -9.94145 -9.43273 -8.17335 -6.34538 -0.25986 0.28690 0.54279 1.40030 1.42753 1.48981 1.50904 1.75420 1.83223 2.20657 2.43490 2.69956 3.10474 3.24187 3.31996 3.46746 3.65143 3.68030 3.71580 3.88488 4.09070 4.19627 4.24298 4.33355 4.40887 4.48016 4.54519 4.61304 4.63969 4.75727 4.79859 4.83951 4.91846 4.92304 4.95740 4.97118 5.00037 5.16107 5.29645 5.35961 5.41431 5.56607 5.61585 5.77832 5.84936 5.97399 6.11038 6.34590 6.68290 6.71932 6.77287 7.19725 7.39091 8.87211 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.002409 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.716294 B =11621.745810 C =12166.483446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.261 1.261 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.534 3.466 15 O -0.601 6.601 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.097 4.097 19 C -0.096 4.096 20 C 0.138 3.862 21 N -0.575 5.575 22 C 0.520 3.480 23 O -0.514 6.514 24 C -0.146 4.146 25 C -0.146 4.146 26 C 0.519 3.481 27 O -0.517 6.517 28 C -0.095 4.095 29 C -0.093 4.093 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.266 0.734 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.822 -12.544 24.726 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.185 1.185 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.324 3.676 15 O -0.484 6.484 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.097 4.097 20 C 0.017 3.983 21 N -0.318 5.318 22 C 0.311 3.689 23 O -0.388 6.388 24 C -0.185 4.185 25 C -0.185 4.185 26 C 0.311 3.689 27 O -0.391 6.391 28 C -0.113 4.113 29 C -0.111 4.111 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.384 -11.937 24.383 29.839 hybrid contribution -0.337 0.339 -1.410 1.489 sum 12.047 -11.598 22.973 28.415 Atomic orbital electron populations 1.21894 0.96782 1.00356 1.00110 1.18624 0.91834 0.92214 0.81463 0.97331 1.21519 1.32199 1.13188 0.91036 0.92070 1.25759 0.94987 0.95629 1.02062 1.70011 1.37167 1.23814 1.24617 0.85480 0.78384 0.79032 0.77957 1.20772 1.20294 1.18535 1.48184 1.48130 1.13400 1.22135 1.22075 1.01729 0.80340 1.01969 1.19046 0.78621 0.85520 0.84444 1.90698 1.57714 1.21082 1.78910 1.19958 1.04286 0.95673 0.92781 1.21196 0.97978 0.99663 0.91421 1.21124 0.98169 0.94455 0.97764 1.20315 0.99492 0.94156 0.95747 1.20695 0.79286 1.03053 0.95219 1.47027 1.09097 1.24931 1.50707 1.21645 0.89904 0.81345 0.75968 1.90769 1.84712 1.25328 1.37991 1.22600 0.92545 0.98441 1.04881 1.22599 0.89097 1.00262 1.06515 1.21673 0.93270 0.79281 0.74724 1.90770 1.69618 1.33863 1.44803 1.21211 0.98272 1.00946 0.90903 1.21685 0.96896 0.92393 1.00143 0.93102 0.96142 0.91035 0.92519 0.91733 0.89568 0.90595 0.86202 0.83963 0.86992 0.86610 0.84590 0.83294 0.84683 0.83279 0.83342 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 8.96 71.98 0.64 -5.95 16 2 C 0.26 14.10 2.63 44.24 0.12 14.21 16 3 H 0.01 0.56 6.91 -2.39 -0.02 0.55 16 4 C -0.54 -30.15 8.37 25.60 0.21 -29.93 16 5 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.59 -26.66 2.75 -830.21 -2.29 -28.94 16 13 C 0.08 2.73 8.13 127.77 1.04 3.77 16 14 C 0.53 24.53 7.33 86.78 0.64 25.17 16 15 O -0.60 -33.37 16.28 -3.90 -0.06 -33.43 16 16 C -0.12 -4.31 5.16 -20.09 -0.10 -4.42 16 17 C -0.08 -2.60 9.65 22.53 0.22 -2.39 16 18 C -0.10 -2.35 9.68 22.23 0.22 -2.13 16 19 C -0.10 -2.01 5.47 -19.81 -0.11 -2.12 16 20 C 0.14 2.13 5.67 85.63 0.49 2.62 16 21 N -0.58 -8.24 2.54 -760.73 -1.93 -10.17 16 22 C 0.52 6.93 8.08 88.00 0.71 7.64 16 23 O -0.51 -10.44 17.47 -2.86 -0.05 -10.49 16 24 C -0.15 -0.47 7.03 30.46 0.21 -0.26 16 25 C -0.15 -0.50 7.03 30.46 0.21 -0.28 16 26 C 0.52 7.14 8.08 87.99 0.71 7.85 16 27 O -0.52 -10.94 17.48 -2.87 -0.05 -10.99 16 28 C -0.10 -2.12 9.68 22.23 0.22 -1.91 16 29 C -0.09 -2.59 7.62 22.53 0.17 -2.42 16 30 H 0.05 2.27 6.67 -2.39 -0.02 2.25 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.06 1.99 6.85 -2.39 -0.02 1.98 16 35 H 0.09 2.40 5.99 -2.39 -0.01 2.39 16 36 H 0.08 2.56 6.44 -2.39 -0.02 2.55 16 37 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 38 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.11 1.54 7.77 -2.39 -0.02 1.52 16 40 H 0.12 1.52 7.76 -2.39 -0.02 1.50 16 41 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.15 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.14 3.80 5.52 -2.91 -0.02 3.78 16 Total: -1.00 -81.85 383.37 4.95 -76.90 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.01 Total: 14.20 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.04 Total: 10.78 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.97 Total: -92.57 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.16 Total: -54.91 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.85 4.95 -76.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.987 kcal (2) G-P(sol) polarization free energy of solvation -81.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds