Wall clock time and date at job start Wed Apr 1 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99543 * 2 1 4 4 O 1.20825 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99859 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47088 * 299.99754 * 5 3 2 7 7 C 1.53004 * 109.47185 * 60.00138 * 5 3 2 8 8 N 1.46502 * 109.46979 * 179.97438 * 5 3 2 9 9 C 1.34781 * 119.99888 * 155.00304 * 8 5 3 10 10 O 1.21668 * 119.99616 * 359.97438 * 9 8 5 11 11 C 1.46902 * 119.99908 * 180.02562 * 9 8 5 12 12 C 1.36374 * 126.77213 * 0.02562 * 11 9 8 13 13 N 1.35474 * 109.77305 * 179.97438 * 12 11 9 14 14 C 1.46493 * 124.78618 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47400 * 265.02448 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.37963 * 110.42294 * 0.24565 * 13 12 11 25 25 C 1.39120 * 133.18667 * 180.39443 * 24 13 12 26 26 C 1.37765 * 119.93588 * 179.61054 * 25 24 13 27 27 C 1.38758 * 120.62864 * 359.78442 * 26 25 24 28 28 C 1.37756 * 120.30310 * 359.97385 * 27 26 25 29 29 C 1.39276 * 119.67023 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47176 * 60.00680 * 1 2 3 31 31 H 1.09008 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47588 * 300.00019 * 1 2 3 33 33 H 1.09003 * 109.46777 * 299.99960 * 7 5 3 34 34 H 1.08996 * 109.46902 * 59.99747 * 7 5 3 35 35 H 1.08996 * 109.46945 * 179.97438 * 7 5 3 36 36 H 0.96995 * 120.00309 * 334.99895 * 8 5 3 37 37 H 1.08000 * 125.11237 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46794 * 145.02547 * 14 13 12 39 39 H 1.09000 * 109.47559 * 25.03023 * 14 13 12 40 40 H 1.09004 * 109.47066 * 60.00265 * 15 14 13 41 41 H 1.08994 * 109.47405 * 300.00096 * 15 14 13 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.03485 * 359.36813 * 25 24 13 44 44 H 1.07997 * 119.69111 * 179.75670 * 26 25 24 45 45 H 1.08007 * 119.84714 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.16533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9556 0.7812 0.8908 7 6 4.1139 0.5813 -1.2483 8 7 3.9815 2.6800 -0.0002 9 6 5.1868 3.0267 0.4934 10 8 5.9298 2.1728 0.9399 11 6 5.6030 4.4355 0.4932 12 6 4.8847 5.4989 0.0315 13 7 5.5958 6.6397 0.1992 14 6 5.1343 7.9762 -0.1842 15 6 5.6641 8.3183 -1.5781 16 6 5.1899 9.6934 -1.9722 17 1 4.5726 10.2662 -1.2959 18 6 5.5491 10.2228 -3.1937 19 7 5.1397 11.4250 -3.5353 20 14 6.6171 9.2324 -4.3631 21 1 5.7522 8.4148 -5.2512 22 1 7.4386 10.1563 -5.1860 23 1 7.5097 8.3389 -3.5820 24 6 6.8183 6.3646 0.7763 25 6 7.8927 7.1624 1.1569 26 6 9.0058 6.5884 1.7308 27 6 9.0668 5.2179 1.9388 28 6 8.0113 4.4117 1.5733 29 6 6.8797 4.9787 0.9921 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.8048 -0.4640 -1.2482 34 1 3.7244 1.0752 -2.1385 35 1 5.2023 0.6388 -1.2481 36 1 3.3891 3.3607 -0.3558 37 1 3.8972 5.4404 -0.4018 38 1 5.5033 8.7080 0.5345 39 1 4.0445 7.9951 -0.1950 40 1 5.2951 7.5865 -2.2968 41 1 6.7538 8.2995 -1.5674 42 1 5.3921 11.7973 -4.3947 43 1 7.8557 8.2302 0.9991 44 1 9.8392 7.2110 2.0211 45 1 9.9459 4.7812 2.3894 46 1 8.0613 3.3451 1.7359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444273225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:34 Heat of formation + Delta-G solvation = -65.747669 kcal Electronic energy + Delta-G solvation = -29353.127426 eV Core-core repulsion = 25208.333908 eV Total energy + Delta-G solvation = -4144.793518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40550 -41.00423 -39.20200 -37.00777 -36.96593 -35.20872 -34.18049 -32.52182 -31.35309 -30.63540 -29.11167 -28.59065 -28.06954 -25.60805 -24.78085 -22.94142 -22.42510 -21.60859 -20.92087 -20.45695 -19.84432 -18.18466 -17.68760 -17.22463 -16.93927 -16.64539 -16.32445 -15.67194 -15.30003 -15.25349 -15.05859 -14.66880 -14.21671 -14.12740 -13.96347 -13.71578 -13.65102 -13.35811 -13.13368 -12.95529 -12.80054 -12.64783 -12.46866 -12.42442 -12.01481 -11.94732 -11.53165 -11.36620 -11.22719 -11.20174 -10.81771 -10.76652 -10.44999 -10.31193 -10.01171 -9.90095 -9.50845 -9.42152 -9.33365 -8.73949 -8.06127 -7.47126 -6.24609 -4.26778 1.16443 1.73530 1.75634 2.04416 2.20535 2.99085 3.15344 3.18767 3.27679 3.31853 3.51078 4.16150 4.22453 4.28364 4.65732 4.71113 4.73468 4.76050 4.81273 4.88374 4.94348 5.08910 5.12312 5.22640 5.30487 5.38081 5.40534 5.51591 5.63311 5.75557 5.81196 5.83445 5.87804 5.91227 5.92279 6.14124 6.16603 6.26212 6.62066 6.77908 6.84294 6.84394 6.88372 7.06118 7.24834 7.33668 7.36887 7.45810 7.56650 8.24616 8.25415 8.75809 9.35738 10.87710 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003114 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.943802 B = 8989.859270 C =11140.091330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.459 3.541 4 O -0.500 6.500 5 C 0.158 3.842 6 H 0.128 0.872 7 C -0.159 4.159 8 N -0.725 5.725 9 C 0.606 3.394 10 O -0.545 6.545 11 C -0.256 4.256 12 C 0.127 3.873 13 N -0.453 5.453 14 C 0.109 3.891 15 C -0.024 4.024 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.090 3.910 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.144 4.144 28 C -0.073 4.073 29 C -0.060 4.060 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.408 0.592 37 H 0.173 0.827 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.267 0.733 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -21.348 8.388 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.301 3.699 4 O -0.386 6.386 5 C 0.052 3.948 6 H 0.145 0.855 7 C -0.218 4.218 8 N -0.380 5.380 9 C 0.397 3.603 10 O -0.423 6.423 11 C -0.267 4.267 12 C -0.009 4.009 13 N -0.130 5.130 14 C -0.010 4.010 15 C -0.062 4.062 16 C -0.569 4.569 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.015 4.015 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.163 4.163 28 C -0.091 4.091 29 C -0.064 4.064 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.244 0.756 37 H 0.190 0.810 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.227 -21.170 8.483 23.034 hybrid contribution -0.212 0.187 -1.057 1.094 sum -3.439 -20.983 7.426 22.523 Atomic orbital electron populations 1.23334 0.75745 1.03963 1.02851 1.86488 1.23797 1.32702 1.83893 1.23816 0.91940 0.81781 0.72342 1.90693 1.66820 1.36282 1.44832 1.20258 0.86138 0.85141 1.03279 0.85463 1.22153 1.03301 1.00797 0.95515 1.45685 1.19370 1.07427 1.65568 1.17169 0.79901 0.87358 0.75835 1.90741 1.52825 1.51367 1.47389 1.19607 0.97691 0.91481 1.17958 1.22140 0.97096 0.84651 0.96997 1.44405 1.12712 1.08208 1.47645 1.22265 1.00474 0.78377 0.99873 1.19934 0.97336 0.98142 0.90755 1.20839 1.33666 0.98968 1.03389 0.90577 1.24944 0.95362 0.94714 0.97775 1.69885 1.45185 1.15752 1.22362 0.86815 0.81195 0.80334 0.81259 1.20082 1.21027 1.18925 1.18289 0.88077 0.94104 1.01016 1.20173 0.92086 0.99405 1.01739 1.20777 0.97202 0.95012 0.99844 1.20906 0.98763 0.93598 1.03042 1.20560 0.91442 1.00008 0.97138 1.18664 0.94069 0.91332 1.02346 0.91629 0.87799 0.91672 0.90205 0.91725 0.89969 0.75551 0.80961 0.89464 0.89182 0.96306 0.95680 0.92352 0.85692 0.85871 0.86196 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.00 10.47 -39.27 -0.41 -3.41 16 3 C 0.46 4.65 7.32 36.01 0.26 4.91 16 4 O -0.50 -6.22 15.59 -18.75 -0.29 -6.51 16 5 C 0.16 1.57 3.09 -69.08 -0.21 1.36 16 6 H 0.13 1.26 7.58 -51.93 -0.39 0.86 16 7 C -0.16 -1.34 9.42 37.16 0.35 -0.99 16 8 N -0.72 -8.44 4.94 -56.17 -0.28 -8.72 16 9 C 0.61 8.85 7.76 -12.75 -0.10 8.75 16 10 O -0.55 -9.10 15.82 5.22 0.08 -9.01 16 11 C -0.26 -3.99 6.27 -103.31 -0.65 -4.64 16 12 C 0.13 1.86 10.75 -16.62 -0.18 1.68 16 13 N -0.45 -7.51 2.74 -114.23 -0.31 -7.82 16 14 C 0.11 1.93 5.89 -4.05 -0.02 1.90 16 15 C -0.02 -0.52 4.36 -27.88 -0.12 -0.64 16 16 C -0.53 -13.96 9.66 -34.44 -0.33 -14.29 16 17 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 20 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 24 C 0.09 1.54 6.79 -83.97 -0.57 0.97 16 25 C -0.11 -1.80 9.97 -39.43 -0.39 -2.19 16 26 C -0.11 -1.50 10.01 -39.56 -0.40 -1.89 16 27 C -0.14 -1.95 10.03 -39.57 -0.40 -2.35 16 28 C -0.07 -1.13 9.85 -39.37 -0.39 -1.51 16 29 C -0.06 -1.01 6.27 -104.95 -0.66 -1.67 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 4.40 6.67 -40.82 -0.27 4.13 16 37 H 0.17 1.93 7.38 -52.49 -0.39 1.54 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 40 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 41 H 0.02 0.58 7.19 -51.93 -0.37 0.20 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.13 1.93 7.45 -52.48 -0.39 1.54 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -33.13 394.58 -8.44 -41.57 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.44 Total: 4.54 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.84 Total: -7.37 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.18 Total: -42.05 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.62 Total: -18.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.13 -8.44 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444273225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.176 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds