Wall clock time and date at job start Wed Apr 1 2020 03:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99543 * 2 1 4 4 O 1.20825 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99859 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47088 * 299.99754 * 5 3 2 7 7 C 1.53004 * 109.47185 * 60.00138 * 5 3 2 8 8 N 1.46502 * 109.46979 * 179.97438 * 5 3 2 9 9 C 1.34781 * 119.99888 * 155.00304 * 8 5 3 10 10 O 1.21668 * 119.99616 * 359.97438 * 9 8 5 11 11 C 1.46902 * 119.99908 * 180.02562 * 9 8 5 12 12 C 1.36374 * 126.77213 * 0.02562 * 11 9 8 13 13 N 1.35474 * 109.77305 * 179.97438 * 12 11 9 14 14 C 1.46493 * 124.78618 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47400 * 265.02448 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.37963 * 110.42294 * 0.24565 * 13 12 11 25 25 C 1.39120 * 133.18667 * 180.39443 * 24 13 12 26 26 C 1.37765 * 119.93588 * 179.61054 * 25 24 13 27 27 C 1.38758 * 120.62864 * 359.78442 * 26 25 24 28 28 C 1.37756 * 120.30310 * 359.97385 * 27 26 25 29 29 C 1.39276 * 119.67023 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47176 * 60.00680 * 1 2 3 31 31 H 1.09008 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47588 * 300.00019 * 1 2 3 33 33 H 1.09003 * 109.46777 * 299.99960 * 7 5 3 34 34 H 1.08996 * 109.46902 * 59.99747 * 7 5 3 35 35 H 1.08996 * 109.46945 * 179.97438 * 7 5 3 36 36 H 0.96995 * 120.00309 * 334.99895 * 8 5 3 37 37 H 1.08000 * 125.11237 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46794 * 145.02547 * 14 13 12 39 39 H 1.09000 * 109.47559 * 25.03023 * 14 13 12 40 40 H 1.09004 * 109.47066 * 60.00265 * 15 14 13 41 41 H 1.08994 * 109.47405 * 300.00096 * 15 14 13 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.03485 * 359.36813 * 25 24 13 44 44 H 1.07997 * 119.69111 * 179.75670 * 26 25 24 45 45 H 1.08007 * 119.84714 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.16533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9556 0.7812 0.8908 7 6 4.1139 0.5813 -1.2483 8 7 3.9815 2.6800 -0.0002 9 6 5.1868 3.0267 0.4934 10 8 5.9298 2.1728 0.9399 11 6 5.6030 4.4355 0.4932 12 6 4.8847 5.4989 0.0315 13 7 5.5958 6.6397 0.1992 14 6 5.1343 7.9762 -0.1842 15 6 5.6641 8.3183 -1.5781 16 6 5.1899 9.6934 -1.9722 17 1 4.5726 10.2662 -1.2959 18 6 5.5491 10.2228 -3.1937 19 7 5.1397 11.4250 -3.5353 20 14 6.6171 9.2324 -4.3631 21 1 5.7522 8.4148 -5.2512 22 1 7.4386 10.1563 -5.1860 23 1 7.5097 8.3389 -3.5820 24 6 6.8183 6.3646 0.7763 25 6 7.8927 7.1624 1.1569 26 6 9.0058 6.5884 1.7308 27 6 9.0668 5.2179 1.9388 28 6 8.0113 4.4117 1.5733 29 6 6.8797 4.9787 0.9921 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.8048 -0.4640 -1.2482 34 1 3.7244 1.0752 -2.1385 35 1 5.2023 0.6388 -1.2481 36 1 3.3891 3.3607 -0.3558 37 1 3.8972 5.4404 -0.4018 38 1 5.5033 8.7080 0.5345 39 1 4.0445 7.9951 -0.1950 40 1 5.2951 7.5865 -2.2968 41 1 6.7538 8.2995 -1.5674 42 1 5.3921 11.7973 -4.3947 43 1 7.8557 8.2302 0.9991 44 1 9.8392 7.2110 2.0211 45 1 9.9459 4.7812 2.3894 46 1 8.0613 3.3451 1.7359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444273225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:33 Heat of formation + Delta-G solvation = -84.598801 kcal Electronic energy + Delta-G solvation = -29353.944873 eV Core-core repulsion = 25208.333908 eV Total energy + Delta-G solvation = -4145.610964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.56033 -41.83095 -40.24772 -38.16799 -37.75714 -36.16016 -35.85497 -34.19995 -32.46956 -31.89826 -30.45549 -29.71756 -28.64790 -27.08460 -25.70381 -24.03264 -23.75194 -22.99818 -21.84234 -21.67655 -20.96034 -19.30890 -18.99866 -18.46966 -17.85692 -17.59195 -17.42088 -16.75924 -16.63657 -16.41094 -16.13373 -16.06267 -15.47372 -15.39363 -15.02440 -14.84523 -14.66958 -14.56016 -14.46865 -14.34376 -13.72516 -13.68381 -13.55082 -13.36809 -13.01231 -13.00613 -12.88493 -12.67113 -12.56113 -12.11682 -12.04276 -11.86481 -11.85381 -11.83097 -11.60240 -11.53347 -11.06416 -10.84584 -10.61457 -10.34730 -9.22965 -8.66861 -8.36579 -6.41999 0.01843 0.60306 0.94979 1.00585 1.29945 1.32180 1.33954 1.43357 1.77230 2.22688 2.28523 2.38265 2.99120 3.00022 3.50737 3.65877 3.68532 3.77920 3.93086 4.00162 4.10456 4.22844 4.28683 4.29657 4.31614 4.33382 4.44610 4.59053 4.61874 4.67132 4.69933 4.72964 4.78774 4.80547 5.10043 5.14016 5.14921 5.18209 5.20940 5.26735 5.48442 5.52185 5.64260 5.69920 5.81815 6.11534 6.21274 6.22212 6.41228 6.52163 6.65814 7.16611 7.23677 8.78982 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003114 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.943802 B = 8989.859270 C =11140.091330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.467 3.533 4 O -0.526 6.526 5 C 0.156 3.844 6 H 0.128 0.872 7 C -0.153 4.153 8 N -0.715 5.715 9 C 0.608 3.392 10 O -0.571 6.571 11 C -0.269 4.269 12 C 0.131 3.869 13 N -0.461 5.461 14 C 0.123 3.877 15 C -0.016 4.016 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.018 3.982 19 N -0.941 5.941 20 Si 0.939 3.061 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.258 1.258 24 C 0.067 3.933 25 C -0.133 4.133 26 C -0.104 4.104 27 C -0.136 4.136 28 C -0.088 4.088 29 C -0.083 4.083 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.413 0.587 37 H 0.204 0.796 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.022 0.978 41 H 0.015 0.985 42 H 0.268 0.732 43 H 0.124 0.876 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -23.521 8.430 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.310 3.690 4 O -0.415 6.415 5 C 0.050 3.950 6 H 0.146 0.854 7 C -0.211 4.211 8 N -0.370 5.370 9 C 0.399 3.601 10 O -0.451 6.451 11 C -0.279 4.279 12 C -0.004 4.004 13 N -0.139 5.139 14 C 0.003 3.997 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.180 4.180 19 N -0.581 5.581 20 Si 0.763 3.237 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.182 1.182 24 C -0.037 4.037 25 C -0.154 4.154 26 C -0.123 4.123 27 C -0.155 4.155 28 C -0.106 4.106 29 C -0.087 4.087 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.908 -23.386 8.530 25.062 hybrid contribution -0.356 0.814 -0.974 1.318 sum -3.263 -22.572 7.556 24.026 Atomic orbital electron populations 1.23629 0.74161 1.06041 1.02722 1.86481 1.25284 1.31579 1.83316 1.23736 0.91793 0.81886 0.71612 1.90685 1.67341 1.37188 1.46291 1.20400 0.86370 0.84114 1.04161 0.85409 1.22109 1.02330 1.01932 0.94706 1.45582 1.18422 1.08535 1.64438 1.17063 0.80438 0.86791 0.75764 1.90720 1.53800 1.51836 1.48780 1.19801 0.97675 0.92240 1.18220 1.22610 0.97943 0.83660 0.96164 1.44289 1.13082 1.08040 1.48467 1.21945 1.01176 0.79293 0.97300 1.19776 0.96619 0.95610 0.93448 1.21157 1.32385 1.00607 1.02636 0.93275 1.25781 0.96871 0.95634 0.99752 1.70016 1.47225 1.17646 1.23177 0.85825 0.79636 0.78970 0.79222 1.19084 1.20848 1.18217 1.18580 0.88635 0.94590 1.01937 1.20403 0.92756 0.99482 1.02724 1.21159 0.97229 0.95508 0.98356 1.21280 0.99071 0.93431 1.01694 1.20729 0.91880 1.00284 0.97729 1.19004 0.95063 0.91587 1.03058 0.91673 0.84669 0.91938 0.88109 0.91394 0.91218 0.74979 0.77921 0.89450 0.87558 0.95974 0.96624 0.92251 0.85844 0.82882 0.83028 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.31 10.47 -51.46 -0.54 -5.84 16 3 C 0.47 8.80 7.32 71.24 0.52 9.33 16 4 O -0.53 -12.53 15.59 21.97 0.34 -12.19 16 5 C 0.16 2.90 3.09 44.25 0.14 3.03 16 6 H 0.13 2.41 7.58 -2.39 -0.02 2.39 16 7 C -0.15 -2.33 9.42 71.98 0.68 -1.65 16 8 N -0.71 -15.96 4.94 -449.85 -2.22 -18.18 16 9 C 0.61 17.43 7.76 86.51 0.67 18.10 16 10 O -0.57 -18.94 15.82 -4.25 -0.07 -19.01 16 11 C -0.27 -8.21 6.27 -19.02 -0.12 -8.33 16 12 C 0.13 3.67 10.75 83.70 0.90 4.57 16 13 N -0.46 -14.91 2.74 -515.30 -1.41 -16.32 16 14 C 0.12 4.24 5.89 86.38 0.51 4.75 16 15 C -0.02 -0.71 4.36 29.85 0.13 -0.58 16 16 C -0.53 -28.09 9.66 25.60 0.25 -27.84 16 17 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 18 C 0.02 1.01 5.47 84.66 0.46 1.47 16 19 N -0.94 -56.25 13.96 21.45 0.30 -55.95 16 20 Si 0.94 43.06 27.47 68.60 1.88 44.95 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.45 6.54 99.48 0.65 -10.80 16 24 C 0.07 2.24 6.79 38.91 0.26 2.50 16 25 C -0.13 -4.11 9.97 22.37 0.22 -3.89 16 26 C -0.10 -2.63 10.01 22.28 0.22 -2.41 16 27 C -0.14 -3.40 10.03 22.28 0.22 -3.18 16 28 C -0.09 -2.64 9.85 22.41 0.22 -2.41 16 29 C -0.08 -2.76 6.27 -20.08 -0.13 -2.89 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.14 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.10 1.11 8.11 -2.39 -0.02 1.09 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 8.39 6.67 -92.71 -0.62 7.77 16 37 H 0.20 4.13 7.38 -2.91 -0.02 4.11 16 38 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.11 3.30 8.11 -2.39 -0.02 3.28 16 40 H 0.02 0.94 7.58 -2.38 -0.02 0.92 16 41 H 0.02 0.70 7.19 -2.39 -0.02 0.68 16 42 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 45 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.13 3.76 7.45 -2.91 -0.02 3.74 16 Total: -1.00 -72.04 394.58 4.98 -67.07 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.33 Total: 23.44 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 6.36 Total: -7.95 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.34 Total: -90.45 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.26 Total: -37.04 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -72.04 4.98 -67.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444273225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.532 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds