Wall clock time and date at job start Wed Apr 1 2020 03:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99771 * 2 1 4 4 C 1.38072 * 120.00436 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.84257 * 179.97438 * 4 3 2 6 6 C 1.46971 * 120.07756 * 179.97438 * 5 4 3 7 7 C 1.35024 * 119.99769 * 135.89449 * 6 5 4 8 8 C 1.46259 * 120.00229 * 348.87360 * 7 6 5 9 9 O 1.21720 * 119.99796 * 353.33253 * 8 7 6 10 10 N 1.34769 * 119.99824 * 173.60975 * 8 7 6 11 11 C 1.46501 * 120.00274 * 359.72395 * 10 8 7 12 12 C 1.46502 * 120.00183 * 179.72332 * 10 8 7 13 13 C 1.52999 * 109.47106 * 89.99841 * 12 10 8 14 14 H 1.09002 * 109.47069 * 55.00123 * 13 12 10 15 15 C 1.53008 * 109.47288 * 295.00511 * 13 12 10 16 16 C 1.47201 * 109.47348 * 175.00640 * 13 12 10 17 17 N 9.95514 * 124.55350 * 37.34308 * 2 1 3 18 18 C 1.40029 * 119.84266 * 0.25273 * 5 4 3 19 19 C 1.37648 * 119.99480 * 359.49515 * 18 5 4 20 20 C 1.39055 * 120.16560 * 0.50657 * 19 18 5 21 21 O 1.35614 * 119.92158 * 179.76868 * 20 19 18 22 22 C 1.34761 * 117.00113 * 354.23717 * 21 20 19 23 23 H 1.07997 * 119.99640 * 5.07536 * 22 21 20 24 24 C 1.38707 * 120.00034 * 185.06732 * 22 21 20 25 25 N 1.31517 * 119.99814 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99911 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46946 * 60.00281 * 26 24 22 28 28 H 1.48499 * 109.47076 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47523 * 300.00668 * 26 24 22 30 30 H 1.08999 * 109.47447 * 300.00171 * 1 2 3 31 31 H 1.09001 * 109.47233 * 60.00316 * 1 2 3 32 32 H 1.09003 * 109.47063 * 179.97438 * 1 2 3 33 33 H 1.08008 * 120.07632 * 359.96319 * 4 3 2 34 34 H 1.07998 * 119.99700 * 315.89072 * 6 5 4 35 35 H 1.08003 * 119.99754 * 168.87453 * 7 6 5 36 36 H 1.08997 * 109.47033 * 89.99988 * 11 10 8 37 37 H 1.09004 * 109.46974 * 209.99905 * 11 10 8 38 38 H 1.08997 * 109.47136 * 330.00137 * 11 10 8 39 39 H 1.08997 * 109.47282 * 210.00366 * 12 10 8 40 40 H 1.09007 * 109.46838 * 330.00471 * 12 10 8 41 41 H 1.09004 * 109.47118 * 59.99390 * 15 13 12 42 42 H 1.08999 * 109.47041 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46749 * 299.99809 * 15 13 12 44 44 H 1.07994 * 119.99689 * 179.74425 * 18 5 4 45 45 H 1.08003 * 119.91317 * 180.23115 * 19 18 5 46 46 H 0.97001 * 119.99376 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1378 4.8507 -0.0011 7 6 1.4776 5.8729 0.8130 8 6 2.4756 5.6710 1.8630 9 8 2.9105 4.5556 2.0828 10 7 2.9095 6.7190 2.5907 11 6 2.3860 8.0615 2.3261 12 6 3.9046 6.5159 3.6465 13 6 5.3092 6.6696 3.0599 14 1 5.3923 7.6371 2.5647 15 6 5.5628 5.5536 2.0443 16 6 6.3046 6.5847 4.1410 17 7 7.0753 6.5184 4.9734 18 6 3.3319 3.6804 -0.0043 19 6 4.0751 2.5218 0.0015 20 6 3.4405 1.2845 0.0010 21 8 4.1776 0.1462 0.0019 22 6 5.5130 0.2819 -0.1172 23 1 5.9571 1.2663 -0.1252 24 6 6.3172 -0.8427 -0.2292 25 7 5.7763 -2.0414 -0.2197 26 14 8.1684 -0.6545 -0.3935 27 1 8.7021 0.0508 0.7994 28 1 8.7951 -1.9968 -0.4972 29 1 8.4796 0.1322 -1.6140 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2155 2.3143 -0.0016 34 1 0.2816 4.9412 -0.6532 35 1 1.0125 6.8397 0.6888 36 1 1.5023 8.2345 2.9403 37 1 3.1477 8.8027 2.5684 38 1 2.1187 8.1461 1.2728 39 1 3.7562 7.2559 4.4329 40 1 3.7926 5.5150 4.0636 41 1 4.8257 5.6165 1.2437 42 1 6.5637 5.6629 1.6267 43 1 5.4798 4.5861 2.5395 44 1 3.8274 4.6399 -0.0080 45 1 5.1539 2.5739 0.0020 46 1 6.3387 -2.8278 -0.2984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491334782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:13 Heat of formation + Delta-G solvation = -2.894781 kcal Electronic energy + Delta-G solvation = -30341.528436 eV Core-core repulsion = 26199.460423 eV Total energy + Delta-G solvation = -4142.068012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.27806 -39.36181 -37.47853 -37.45194 -36.35304 -35.36507 -33.61288 -32.74168 -32.04467 -29.50843 -28.62833 -27.58089 -26.72249 -26.24041 -25.31583 -23.92052 -22.39140 -21.48368 -20.52059 -18.58968 -18.02235 -17.95162 -17.59717 -16.85837 -16.21924 -15.81350 -15.28943 -15.27138 -15.04401 -14.85929 -14.51920 -14.07068 -13.84966 -13.76008 -13.47671 -13.37072 -13.31089 -13.02639 -12.96280 -12.82144 -12.75286 -12.45202 -12.28355 -12.19877 -11.77530 -11.57252 -11.42487 -11.37106 -11.34761 -11.11168 -10.97110 -10.87946 -10.64138 -10.48120 -10.32709 -9.50999 -9.33870 -9.14747 -8.75728 -8.66885 -7.72392 -6.64952 -6.42791 -3.95248 1.15143 2.31596 2.53743 2.65018 2.65725 2.97556 3.15546 3.17293 3.19133 3.51773 3.88985 3.98169 4.12034 4.52576 4.62673 4.68952 4.85110 4.92715 4.97846 5.07996 5.11494 5.20179 5.23697 5.36268 5.43577 5.53418 5.55308 5.61221 5.62416 5.69355 5.74358 5.82089 5.90431 5.97966 6.16256 6.27137 6.34736 6.41758 6.44991 6.56428 6.71353 7.02617 7.15960 7.28821 7.36968 7.42124 7.46525 7.70912 7.98718 8.27986 8.40982 9.01374 9.73953 10.74072 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.004142 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3362.774299 B = 6758.479602 C = 9521.059063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.039 3.961 4 C -0.135 4.135 5 C -0.160 4.160 6 C 0.028 3.972 7 C -0.267 4.267 8 C 0.540 3.460 9 O -0.499 6.499 10 N -0.622 5.622 11 C 0.079 3.921 12 C 0.126 3.874 13 C -0.010 4.010 14 H 0.111 0.889 15 C -0.143 4.143 16 C 0.215 3.785 17 N -0.436 5.436 18 C -0.009 4.009 19 C -0.222 4.222 20 C 0.152 3.848 21 O -0.157 6.157 22 C -0.388 4.388 23 H 0.093 0.907 24 C 0.040 3.960 25 N -0.853 5.853 26 Si 0.939 3.061 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 20.175 0.887 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.005 4.005 4 C -0.154 4.154 5 C -0.161 4.161 6 C 0.008 3.992 7 C -0.288 4.288 8 C 0.332 3.668 9 O -0.374 6.374 10 N -0.357 5.357 11 C -0.064 4.064 12 C 0.002 3.998 13 C -0.033 4.033 14 H 0.128 0.872 15 C -0.202 4.202 16 C -0.104 4.104 17 N -0.111 5.111 18 C -0.028 4.028 19 C -0.241 4.241 20 C 0.097 3.903 21 O -0.059 6.059 22 C -0.464 4.464 23 H 0.111 0.889 24 C -0.165 4.165 25 N -0.487 5.487 26 Si 0.764 3.236 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.119 0.881 45 H 0.148 0.852 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.223 18.750 2.276 20.600 hybrid contribution 0.320 0.612 -0.300 0.752 sum -7.904 19.362 1.976 21.006 Atomic orbital electron populations 1.22846 0.80686 1.02711 1.00065 1.86225 1.19136 1.26532 1.90070 1.17946 0.89368 0.84351 1.08885 1.20666 0.97948 0.90983 1.05830 1.18015 0.92895 0.91160 1.14066 1.22331 0.93742 0.91355 0.91746 1.22682 1.05275 1.00322 1.00480 1.18528 0.81756 0.84050 0.82474 1.91030 1.56531 1.22423 1.67380 1.47763 1.42732 1.08370 1.36872 1.21798 0.99209 0.83261 1.02113 1.21294 0.84774 1.04402 0.89380 1.19339 0.90274 1.02986 0.90693 0.87161 1.21935 1.02200 0.97711 0.98318 1.29078 0.94192 0.93034 0.94084 1.81239 1.10278 1.08797 1.10825 1.20515 0.91864 0.96455 0.93916 1.20697 1.00253 0.90848 1.12351 1.18827 0.88221 0.87586 0.95675 1.83989 1.19455 1.25782 1.76682 1.21366 0.78669 0.94759 1.51612 0.88946 1.25314 1.00430 0.94234 0.96517 1.70042 1.36321 0.97655 1.44640 0.85805 0.80527 0.78012 0.79270 1.19422 1.20236 1.19399 0.93767 0.93745 0.89281 0.86627 0.86126 0.85845 0.92810 0.91350 0.90570 0.90127 0.88616 0.90319 0.92291 0.90497 0.88063 0.85179 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.31 -6.85 10.28 -34.20 -0.35 -7.20 16 3 C 0.04 0.88 6.70 -39.12 -0.26 0.62 16 4 C -0.13 -2.48 8.77 -38.99 -0.34 -2.83 16 5 C -0.16 -2.72 4.51 -105.04 -0.47 -3.20 16 6 C 0.03 0.35 9.80 -37.19 -0.36 -0.02 16 7 C -0.27 -2.85 9.03 -37.50 -0.34 -3.19 16 8 C 0.54 6.69 5.34 -13.04 -0.07 6.62 16 9 O -0.50 -8.30 10.07 5.17 0.05 -8.25 16 10 N -0.62 -5.52 2.76 -183.28 -0.51 -6.03 16 11 C 0.08 0.40 10.10 59.85 0.60 1.00 16 12 C 0.13 1.12 4.95 -4.04 -0.02 1.10 16 13 C -0.01 -0.09 2.97 -93.40 -0.28 -0.37 16 14 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.14 -1.65 7.89 37.16 0.29 -1.36 16 16 C 0.21 2.47 14.65 -20.75 -0.30 2.17 16 17 N -0.44 -6.29 18.54 42.17 0.78 -5.51 16 18 C -0.01 -0.16 6.61 -39.13 -0.26 -0.42 16 19 C -0.22 -4.88 9.14 -39.49 -0.36 -5.24 16 20 C 0.15 3.84 6.67 -38.76 -0.26 3.58 16 21 O -0.16 -4.64 9.52 -13.95 -0.13 -4.78 16 22 C -0.39 -11.00 9.48 30.91 0.29 -10.71 16 23 H 0.09 2.40 5.18 -52.49 -0.27 2.13 16 24 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 25 N -0.85 -25.44 13.67 55.48 0.76 -24.68 16 26 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 30 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 31 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.12 1.76 6.28 -52.48 -0.33 1.43 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 0.89 6.33 -52.48 -0.33 0.56 16 36 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 38 H 0.08 0.32 6.20 -51.93 -0.32 0.00 16 39 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.10 1.09 7.42 -51.93 -0.39 0.71 16 41 H 0.08 0.95 4.24 -51.93 -0.22 0.73 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 44 H 0.10 1.63 5.26 -52.49 -0.28 1.35 16 45 H 0.13 2.85 5.62 -52.48 -0.29 2.55 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -36.02 382.56 -5.63 -41.65 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.73 Total: 2.98 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.24 Total: -9.71 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.03 Total: -36.21 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.43 Total: -20.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.02 -5.63 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491334782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.755 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds