Wall clock time and date at job start Wed Apr 1 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 N 1.46500 * 109.47140 * 239.99894 * 2 1 3 5 5 C 1.34776 * 119.99938 * 84.99828 * 4 2 1 6 6 O 1.21694 * 120.00114 * 0.02562 * 5 4 2 7 7 C 1.46436 * 119.99741 * 179.97438 * 5 4 2 8 8 C 1.34809 * 119.99281 * 172.74690 * 7 5 4 9 9 C 1.47201 * 120.00561 * 350.17758 * 8 7 5 10 10 C 1.39845 * 120.16846 * 315.27039 * 9 8 7 11 11 C 1.37892 * 119.82276 * 179.74722 * 10 9 8 12 12 C 1.38398 * 120.16982 * 0.55481 * 11 10 9 13 13 C 1.38399 * 120.34818 * 359.69999 * 12 11 10 14 14 C 1.37884 * 120.17338 * 0.02562 * 13 12 11 15 15 C 1.50707 * 109.46977 * 120.00013 * 2 1 3 16 16 O 1.21280 * 119.99949 * 100.19337 * 15 2 1 17 17 N 1.34772 * 119.99903 * 280.18840 * 15 2 1 18 18 C 1.47584 * 134.49220 * 354.80771 * 17 15 2 19 19 C 1.53947 * 86.24025 * 204.69597 * 18 17 15 20 20 O 1.42904 * 113.73778 * 90.68681 * 19 18 17 21 21 C 1.50697 * 113.74314 * 221.88199 * 19 18 17 22 22 H 1.08003 * 119.99601 * 0.02562 * 21 19 18 23 23 C 1.37878 * 120.00152 * 180.02562 * 21 19 18 24 24 N 1.31516 * 119.99938 * 0.02562 * 23 21 19 25 25 Si 1.86796 * 120.00033 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47446 * 90.00027 * 25 23 21 27 27 H 1.48502 * 109.47266 * 210.00120 * 25 23 21 28 28 H 1.48505 * 109.47225 * 329.99774 * 25 23 21 29 29 C 1.47926 * 134.63145 * 174.89822 * 17 15 2 30 30 H 1.09000 * 109.47396 * 305.94176 * 1 2 3 31 31 H 1.09005 * 109.47671 * 65.94408 * 1 2 3 32 32 H 1.09008 * 109.47335 * 185.94186 * 1 2 3 33 33 H 0.97006 * 119.99676 * 264.99858 * 4 2 1 34 34 H 1.07995 * 120.00123 * 352.74951 * 7 5 4 35 35 H 1.08005 * 119.99322 * 170.17481 * 8 7 5 36 36 H 1.07995 * 120.08204 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.90754 * 180.27553 * 11 10 9 38 38 H 1.08007 * 119.82253 * 179.71929 * 12 11 10 39 39 H 1.08000 * 119.91091 * 180.02562 * 13 12 11 40 40 H 1.07996 * 120.09184 * 180.02562 * 14 13 12 41 41 H 1.09003 * 113.77012 * 90.34089 * 18 17 15 42 42 H 1.09001 * 113.77210 * 319.05777 * 18 17 15 43 43 H 0.96696 * 113.99947 * 179.97438 * 20 19 18 44 44 H 0.96997 * 119.99742 * 179.97438 * 24 23 21 45 45 H 1.09001 * 113.77251 * 40.99340 * 29 17 15 46 46 H 1.09004 * 113.86922 * 269.60839 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6356 -0.7085 -3.5526 8 6 2.6266 -0.0795 -4.7449 9 6 1.9326 1.2103 -4.8915 10 6 0.6582 1.3889 -4.3441 11 6 0.0168 2.6018 -4.4812 12 6 0.6262 3.6371 -5.1683 13 6 1.8850 3.4665 -5.7175 14 6 2.5418 2.2614 -5.5841 15 6 2.0323 -0.7104 1.2305 16 8 2.4096 -1.8606 1.1551 17 7 2.0622 -0.0677 2.4147 18 6 1.7835 1.3153 2.8482 19 6 2.7197 1.0242 4.0351 20 8 4.0871 1.3549 3.7839 21 6 2.2174 1.5619 5.3502 22 1 1.2786 2.0943 5.3927 23 6 2.9562 1.3743 6.4991 24 7 4.0995 0.7264 6.4473 25 14 2.3331 2.0402 8.1293 26 1 1.4958 1.0115 8.7968 27 1 3.4878 2.3793 8.9994 28 1 1.5205 3.2595 7.8879 29 6 2.3885 -0.4611 3.8028 30 1 -0.3634 0.6032 0.8320 31 1 -0.3634 0.4189 -0.9384 32 1 -0.3634 -1.0222 0.1064 33 1 2.2490 -1.6318 -1.1525 34 1 3.0031 -1.7214 -3.4790 35 1 3.1288 -0.5221 -5.5926 36 1 0.1797 0.5804 -3.8115 37 1 -0.9655 2.7427 -4.0551 38 1 0.1168 4.5834 -5.2762 39 1 2.3542 4.2793 -6.2519 40 1 3.5242 2.1298 -6.0128 41 1 0.7464 1.4844 3.1379 42 1 2.1634 2.0749 2.1649 43 1 4.6784 1.1739 4.5272 44 1 4.6194 0.5948 7.2555 45 1 3.2524 -1.1213 3.8808 46 1 1.5303 -0.8144 4.3745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491985132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:42 Heat of formation + Delta-G solvation = -29.148161 kcal Electronic energy + Delta-G solvation = -29595.233686 eV Core-core repulsion = 25452.027242 eV Total energy + Delta-G solvation = -4143.206444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40849 -39.58398 -38.63474 -37.50197 -34.91816 -34.03789 -33.87827 -32.22420 -31.23242 -30.93581 -29.46234 -28.43854 -25.72445 -25.31979 -24.79150 -23.16071 -22.47759 -21.46748 -20.06117 -19.73698 -18.42214 -17.79228 -17.32356 -16.64322 -16.43555 -16.05840 -15.36287 -15.15925 -15.15108 -14.94713 -14.55868 -14.35332 -14.20102 -13.98696 -13.63365 -13.42466 -13.20639 -12.91413 -12.85717 -12.69463 -12.52898 -12.32398 -12.02895 -11.99643 -11.63013 -11.56495 -11.26203 -11.18219 -11.11371 -10.95108 -10.56526 -10.33364 -10.18828 -9.84088 -9.81849 -9.30785 -9.08682 -8.80522 -8.74452 -8.46840 -8.21224 -7.94068 -6.41839 -4.53088 0.60693 1.46175 1.78096 2.90542 3.06530 3.13014 3.21465 3.24082 3.27386 3.62449 3.83834 4.15931 4.53766 4.64081 4.73863 4.81805 4.89495 4.93938 5.05612 5.15545 5.18929 5.24039 5.39489 5.47575 5.52087 5.64556 5.74935 5.83276 5.87691 5.92484 6.01885 6.05738 6.08772 6.14678 6.21956 6.34523 6.40325 6.44280 6.49577 6.55216 6.63705 6.73488 6.97665 7.05720 7.55200 7.60406 7.76579 8.22822 8.34681 8.49888 8.57097 9.18278 9.42909 10.64783 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.002292 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.398186 B =12211.218482 C =12833.610034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.107 0.893 4 N -0.706 5.706 5 C 0.539 3.461 6 O -0.527 6.527 7 C -0.207 4.207 8 C -0.025 4.025 9 C -0.073 4.073 10 C -0.035 4.035 11 C -0.132 4.132 12 C -0.109 4.109 13 C -0.136 4.136 14 C -0.100 4.100 15 C 0.526 3.474 16 O -0.562 6.562 17 N -0.625 5.625 18 C 0.100 3.900 19 C 0.240 3.760 20 O -0.574 6.574 21 C -0.538 4.538 22 H 0.072 0.928 23 C 0.072 3.928 24 N -0.897 5.897 25 Si 0.909 3.091 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.270 1.270 29 C 0.087 3.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.394 0.606 44 H 0.274 0.726 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -0.122 -20.217 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 H 0.125 0.875 4 N -0.359 5.359 5 C 0.328 3.672 6 O -0.406 6.406 7 C -0.228 4.228 8 C -0.045 4.045 9 C -0.073 4.073 10 C -0.053 4.053 11 C -0.150 4.150 12 C -0.127 4.127 13 C -0.154 4.154 14 C -0.118 4.118 15 C 0.314 3.686 16 O -0.442 6.442 17 N -0.358 5.358 18 C -0.022 4.022 19 C 0.198 3.802 20 O -0.387 6.387 21 C -0.577 4.577 22 H 0.091 0.909 23 C -0.131 4.131 24 N -0.537 5.537 25 Si 0.736 3.264 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.195 1.195 29 C -0.035 4.035 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.176 0.129 -20.880 21.775 hybrid contribution 0.169 -0.465 1.642 1.715 sum -6.008 -0.336 -19.237 20.156 Atomic orbital electron populations 1.22007 0.92859 1.02762 1.03256 1.20687 0.95509 0.98096 0.83571 0.87486 1.45804 1.66694 1.14711 1.08693 1.18466 0.78003 0.87082 0.83697 1.90899 1.49787 1.15306 1.84586 1.22986 1.06158 1.00952 0.92705 1.22390 0.92818 0.92567 0.96703 1.18869 0.94900 0.93876 0.99675 1.21023 0.93469 0.97239 0.93582 1.20939 1.00289 0.93539 1.00277 1.21168 0.95386 0.98546 0.97632 1.20926 0.95568 0.97309 1.01568 1.21140 0.99214 0.93069 0.98402 1.20038 0.78528 0.86181 0.83867 1.90622 1.50293 1.17951 1.85357 1.50227 1.64965 1.13792 1.06834 1.23635 1.00154 0.82363 0.96061 1.19806 0.81278 0.88279 0.90806 1.86031 1.18671 1.87757 1.46209 1.21479 1.07364 1.37415 0.91400 0.90950 1.25093 0.94550 0.93577 0.99904 1.69319 1.13470 1.40710 1.30159 0.86313 0.78543 0.79421 0.82132 1.20302 1.20883 1.19509 1.24381 0.99668 1.02787 0.76639 0.90870 0.91188 0.92030 0.75450 0.84762 0.84610 0.87024 0.86426 0.86528 0.86385 0.86319 0.89206 0.90884 0.74964 0.91547 0.91294 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.47 37.15 0.35 -1.62 16 2 C 0.13 2.04 2.74 -69.08 -0.19 1.85 16 3 H 0.11 1.81 7.51 -51.93 -0.39 1.42 16 4 N -0.71 -9.91 5.04 -56.32 -0.28 -10.19 16 5 C 0.54 7.33 6.77 -12.96 -0.09 7.25 16 6 O -0.53 -8.50 11.78 5.19 0.06 -8.43 16 7 C -0.21 -2.11 9.93 -37.50 -0.37 -2.49 16 8 C -0.03 -0.24 9.81 -37.16 -0.36 -0.60 16 9 C -0.07 -0.84 4.53 -105.06 -0.48 -1.31 16 10 C -0.03 -0.42 6.59 -39.11 -0.26 -0.68 16 11 C -0.13 -1.51 10.03 -39.65 -0.40 -1.90 16 12 C -0.11 -1.15 10.04 -39.46 -0.40 -1.55 16 13 C -0.14 -1.40 10.03 -39.65 -0.40 -1.79 16 14 C -0.10 -1.07 9.80 -39.11 -0.38 -1.45 16 15 C 0.53 10.20 7.30 -10.98 -0.08 10.12 16 16 O -0.56 -12.20 16.66 5.56 0.09 -12.11 16 17 N -0.63 -12.77 3.62 -177.22 -0.64 -13.41 16 18 C 0.10 1.97 7.94 -2.97 -0.02 1.94 16 19 C 0.24 5.63 1.44 -90.84 -0.13 5.50 16 20 O -0.57 -14.68 13.49 -35.23 -0.48 -15.16 16 21 C -0.54 -13.18 8.63 -34.44 -0.30 -13.48 16 22 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 23 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 24 N -0.90 -22.81 11.08 55.43 0.61 -22.20 16 25 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 29 C 0.09 1.96 8.25 -2.79 -0.02 1.93 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.41 5.42 7.72 -40.82 -0.31 5.11 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.11 1.33 7.05 -52.49 -0.37 0.96 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.39 10.32 6.42 45.56 0.29 10.62 16 44 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 46 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -30.08 391.27 -9.20 -39.28 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -5.82 Total: 18.71 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -3.62 Total: 3.39 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.31 Total: -45.81 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.32 Total: -35.70 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.08 -9.20 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491985132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.130 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds