Wall clock time and date at job start Wed Apr 1 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 N 1.46500 * 109.47140 * 239.99894 * 2 1 3 5 5 C 1.34776 * 119.99938 * 84.99828 * 4 2 1 6 6 O 1.21694 * 120.00114 * 0.02562 * 5 4 2 7 7 C 1.46436 * 119.99741 * 179.97438 * 5 4 2 8 8 C 1.34809 * 119.99281 * 172.74690 * 7 5 4 9 9 C 1.47201 * 120.00561 * 350.17758 * 8 7 5 10 10 C 1.39845 * 120.16846 * 315.27039 * 9 8 7 11 11 C 1.37892 * 119.82276 * 179.74722 * 10 9 8 12 12 C 1.38398 * 120.16982 * 0.55481 * 11 10 9 13 13 C 1.38399 * 120.34818 * 359.69999 * 12 11 10 14 14 C 1.37884 * 120.17338 * 0.02562 * 13 12 11 15 15 C 1.50707 * 109.46977 * 120.00013 * 2 1 3 16 16 O 1.21280 * 119.99949 * 100.19337 * 15 2 1 17 17 N 1.34772 * 119.99903 * 280.18840 * 15 2 1 18 18 C 1.47584 * 134.49220 * 354.80771 * 17 15 2 19 19 C 1.53947 * 86.24025 * 204.69597 * 18 17 15 20 20 O 1.42904 * 113.73778 * 90.68681 * 19 18 17 21 21 C 1.50697 * 113.74314 * 221.88199 * 19 18 17 22 22 H 1.08003 * 119.99601 * 0.02562 * 21 19 18 23 23 C 1.37878 * 120.00152 * 180.02562 * 21 19 18 24 24 N 1.31516 * 119.99938 * 0.02562 * 23 21 19 25 25 Si 1.86796 * 120.00033 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47446 * 90.00027 * 25 23 21 27 27 H 1.48502 * 109.47266 * 210.00120 * 25 23 21 28 28 H 1.48505 * 109.47225 * 329.99774 * 25 23 21 29 29 C 1.47926 * 134.63145 * 174.89822 * 17 15 2 30 30 H 1.09000 * 109.47396 * 305.94176 * 1 2 3 31 31 H 1.09005 * 109.47671 * 65.94408 * 1 2 3 32 32 H 1.09008 * 109.47335 * 185.94186 * 1 2 3 33 33 H 0.97006 * 119.99676 * 264.99858 * 4 2 1 34 34 H 1.07995 * 120.00123 * 352.74951 * 7 5 4 35 35 H 1.08005 * 119.99322 * 170.17481 * 8 7 5 36 36 H 1.07995 * 120.08204 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.90754 * 180.27553 * 11 10 9 38 38 H 1.08007 * 119.82253 * 179.71929 * 12 11 10 39 39 H 1.08000 * 119.91091 * 180.02562 * 13 12 11 40 40 H 1.07996 * 120.09184 * 180.02562 * 14 13 12 41 41 H 1.09003 * 113.77012 * 90.34089 * 18 17 15 42 42 H 1.09001 * 113.77210 * 319.05777 * 18 17 15 43 43 H 0.96696 * 113.99947 * 179.97438 * 20 19 18 44 44 H 0.96997 * 119.99742 * 179.97438 * 24 23 21 45 45 H 1.09001 * 113.77251 * 40.99340 * 29 17 15 46 46 H 1.09004 * 113.86922 * 269.60839 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6356 -0.7085 -3.5526 8 6 2.6266 -0.0795 -4.7449 9 6 1.9326 1.2103 -4.8915 10 6 0.6582 1.3889 -4.3441 11 6 0.0168 2.6018 -4.4812 12 6 0.6262 3.6371 -5.1683 13 6 1.8850 3.4665 -5.7175 14 6 2.5418 2.2614 -5.5841 15 6 2.0323 -0.7104 1.2305 16 8 2.4096 -1.8606 1.1551 17 7 2.0622 -0.0677 2.4147 18 6 1.7835 1.3153 2.8482 19 6 2.7197 1.0242 4.0351 20 8 4.0871 1.3549 3.7839 21 6 2.2174 1.5619 5.3502 22 1 1.2786 2.0943 5.3927 23 6 2.9562 1.3743 6.4991 24 7 4.0995 0.7264 6.4473 25 14 2.3331 2.0402 8.1293 26 1 1.4958 1.0115 8.7968 27 1 3.4878 2.3793 8.9994 28 1 1.5205 3.2595 7.8879 29 6 2.3885 -0.4611 3.8028 30 1 -0.3634 0.6032 0.8320 31 1 -0.3634 0.4189 -0.9384 32 1 -0.3634 -1.0222 0.1064 33 1 2.2490 -1.6318 -1.1525 34 1 3.0031 -1.7214 -3.4790 35 1 3.1288 -0.5221 -5.5926 36 1 0.1797 0.5804 -3.8115 37 1 -0.9655 2.7427 -4.0551 38 1 0.1168 4.5834 -5.2762 39 1 2.3542 4.2793 -6.2519 40 1 3.5242 2.1298 -6.0128 41 1 0.7464 1.4844 3.1379 42 1 2.1634 2.0749 2.1649 43 1 4.6784 1.1739 4.5272 44 1 4.6194 0.5948 7.2555 45 1 3.2524 -1.1213 3.8808 46 1 1.5303 -0.8144 4.3745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491985132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:41 Heat of formation + Delta-G solvation = -49.032248 kcal Electronic energy + Delta-G solvation = -29596.095925 eV Core-core repulsion = 25452.027242 eV Total energy + Delta-G solvation = -4144.068683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66232 -40.91301 -39.68481 -39.01738 -36.11083 -35.88621 -34.73406 -34.14206 -32.39677 -31.72722 -30.47570 -29.93228 -27.40621 -27.03911 -25.86748 -24.24761 -23.28630 -22.51337 -21.63255 -20.85457 -19.91128 -19.25463 -18.70337 -17.85651 -17.68876 -17.23282 -17.07100 -16.61601 -16.26463 -16.00915 -15.90481 -15.65634 -15.50443 -14.93138 -14.90350 -14.54040 -14.51025 -14.31436 -14.17043 -13.83356 -13.66281 -13.52162 -13.45126 -13.31027 -13.17702 -12.93742 -12.78416 -12.60803 -12.28177 -12.22551 -12.03621 -11.95674 -11.51049 -11.07949 -10.92377 -10.74326 -10.64705 -10.37469 -10.19471 -9.65259 -9.60528 -9.04600 -8.27850 -6.45793 -0.19553 0.64745 0.97214 1.43030 1.46313 1.49688 1.58779 1.65106 2.30663 2.31276 2.40406 2.95149 3.03211 3.21146 3.72411 3.77796 3.87145 4.00207 4.01708 4.11380 4.17386 4.18405 4.31337 4.43127 4.51439 4.56348 4.59551 4.63835 4.64536 4.72003 4.75118 4.86419 4.91661 5.04395 5.07912 5.12043 5.20881 5.23781 5.28500 5.34738 5.65180 5.70169 5.72023 5.74753 5.88767 6.20038 6.50535 6.61661 6.73937 6.95753 7.20644 7.28230 7.42255 8.78088 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.002292 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.398186 B =12211.218482 C =12833.610034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.141 3.859 3 H 0.096 0.904 4 N -0.707 5.707 5 C 0.535 3.465 6 O -0.556 6.556 7 C -0.220 4.220 8 C -0.011 4.011 9 C -0.093 4.093 10 C -0.052 4.052 11 C -0.149 4.149 12 C -0.119 4.119 13 C -0.144 4.144 14 C -0.110 4.110 15 C 0.523 3.477 16 O -0.588 6.588 17 N -0.628 5.628 18 C 0.115 3.885 19 C 0.217 3.783 20 O -0.588 6.588 21 C -0.551 4.551 22 H 0.082 0.918 23 C 0.026 3.974 24 N -0.922 5.922 25 Si 0.972 3.028 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.264 1.264 29 C 0.089 3.911 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.412 0.588 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.387 0.613 44 H 0.275 0.725 45 H 0.041 0.959 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 0.467 -21.522 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.114 0.886 4 N -0.360 5.360 5 C 0.326 3.674 6 O -0.436 6.436 7 C -0.241 4.241 8 C -0.030 4.030 9 C -0.093 4.093 10 C -0.070 4.070 11 C -0.167 4.167 12 C -0.137 4.137 13 C -0.162 4.162 14 C -0.128 4.128 15 C 0.312 3.688 16 O -0.470 6.470 17 N -0.361 5.361 18 C -0.007 4.007 19 C 0.176 3.824 20 O -0.400 6.400 21 C -0.589 4.589 22 H 0.100 0.900 23 C -0.174 4.174 24 N -0.563 5.563 25 Si 0.797 3.203 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.188 1.188 29 C -0.034 4.034 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.180 0.820 35 H 0.191 0.809 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.242 0.758 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.054 0.718 -22.213 23.317 hybrid contribution 0.460 -0.625 1.983 2.130 sum -6.594 0.093 -20.230 21.277 Atomic orbital electron populations 1.21962 0.90676 1.03281 1.04055 1.20544 0.96991 0.96826 0.82441 0.88633 1.45845 1.67005 1.14830 1.08366 1.19060 0.77223 0.86896 0.84240 1.90889 1.51078 1.16618 1.85021 1.23069 1.07315 1.02218 0.91455 1.22772 0.91358 0.91339 0.97526 1.19210 0.95016 0.95231 0.99851 1.21109 0.94266 0.97433 0.94211 1.21185 1.00960 0.93806 1.00783 1.21475 0.95797 0.99132 0.97333 1.21290 0.95547 0.97982 1.01365 1.21482 1.00141 0.92988 0.98159 1.20696 0.77661 0.86015 0.84379 1.90602 1.51320 1.19290 1.85800 1.50211 1.65264 1.14088 1.06498 1.23638 1.00744 0.81994 0.94315 1.20159 0.80801 0.89047 0.92434 1.86017 1.19894 1.88014 1.46080 1.21783 1.07757 1.37433 0.91956 0.90015 1.25854 0.94715 0.93808 1.03002 1.69410 1.14420 1.41638 1.30827 0.85337 0.77815 0.78915 0.78266 1.19958 1.21206 1.18827 1.24188 0.98951 1.01776 0.78444 0.90074 0.90340 0.91625 0.75018 0.82015 0.80863 0.87728 0.85625 0.84664 0.84224 0.84221 0.86281 0.90192 0.75775 0.91556 0.94057 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.47 71.98 0.68 -2.84 16 2 C 0.14 4.33 2.74 44.25 0.12 4.45 16 3 H 0.10 3.20 7.51 -2.39 -0.02 3.18 16 4 N -0.71 -19.38 5.04 -450.32 -2.27 -21.65 16 5 C 0.53 14.12 6.77 86.38 0.58 14.70 16 6 O -0.56 -17.67 11.78 -4.33 -0.05 -17.72 16 7 C -0.22 -4.08 9.93 23.62 0.23 -3.84 16 8 C -0.01 -0.18 9.81 23.84 0.23 0.06 16 9 C -0.09 -2.00 4.53 -20.15 -0.09 -2.10 16 10 C -0.05 -1.23 6.59 22.58 0.15 -1.08 16 11 C -0.15 -3.33 10.03 22.23 0.22 -3.11 16 12 C -0.12 -2.38 10.04 22.35 0.22 -2.16 16 13 C -0.14 -2.72 10.03 22.22 0.22 -2.50 16 14 C -0.11 -2.13 9.80 22.57 0.22 -1.91 16 15 C 0.52 20.16 7.30 87.66 0.64 20.80 16 16 O -0.59 -25.65 16.66 -3.03 -0.05 -25.70 16 17 N -0.63 -25.50 3.62 -836.41 -3.03 -28.53 16 18 C 0.11 4.38 7.94 86.48 0.69 5.06 16 19 C 0.22 10.20 1.44 -10.89 -0.02 10.19 16 20 O -0.59 -30.70 13.49 -148.98 -2.01 -32.71 16 21 C -0.55 -26.71 8.63 25.60 0.22 -26.49 16 22 H 0.08 3.71 7.81 -2.91 -0.02 3.69 16 23 C 0.03 1.29 5.39 84.65 0.46 1.75 16 24 N -0.92 -47.59 11.08 21.45 0.24 -47.35 16 25 Si 0.97 39.08 29.54 68.60 2.03 41.11 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 29 C 0.09 4.06 8.25 86.41 0.71 4.78 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.41 10.68 7.72 -92.70 -0.72 9.97 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.10 2.51 7.05 -2.91 -0.02 2.49 16 37 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.12 3.83 8.09 -2.39 -0.02 3.81 16 42 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.39 20.96 6.42 -74.06 -0.48 20.48 16 44 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 45 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 3.89 8.09 -2.39 -0.02 3.87 16 Total: -1.00 -65.34 391.27 0.18 -65.16 By element: Atomic # 1 Polarization: 51.83 SS G_CDS: -0.18 Total: 51.65 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 5.51 Total: 15.75 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -5.06 Total: -97.54 kcal Atomic # 8 Polarization: -74.02 SS G_CDS: -2.11 Total: -76.13 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -65.34 0.18 -65.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491985132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds