Wall clock time and date at job start Wed Apr 1 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46965 * 2 1 4 4 C 1.46763 * 124.35100 * 89.99985 * 3 2 1 5 5 C 1.54476 * 105.47326 * 163.00251 * 4 3 2 6 6 H 1.08989 * 110.97110 * 267.25708 * 5 4 3 7 7 N 1.46502 * 110.97062 * 143.52917 * 5 4 3 8 8 C 1.34779 * 120.00004 * 154.99773 * 7 5 4 9 9 O 1.21718 * 119.99908 * 0.02562 * 8 7 5 10 10 C 1.46255 * 119.99865 * 179.97438 * 8 7 5 11 11 C 1.35018 * 120.00031 * 179.97438 * 10 8 7 12 12 C 1.46960 * 120.00380 * 180.02562 * 11 10 8 13 13 C 1.40026 * 120.10267 * 180.02562 * 12 11 10 14 14 C 1.37594 * 119.89660 * 179.97438 * 13 12 11 15 15 C 1.39178 * 120.10071 * 0.27233 * 14 13 12 16 16 O 1.35579 * 119.89553 * 179.70771 * 15 14 13 17 17 C 1.34781 * 117.00320 * 354.44312 * 16 15 14 18 18 H 1.08005 * 119.99725 * 5.05569 * 17 16 15 19 19 C 1.38715 * 120.00342 * 185.05925 * 17 16 15 20 20 N 1.31515 * 119.99717 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47164 * 59.99920 * 21 19 17 23 23 H 1.48499 * 109.46955 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46956 * 299.99763 * 21 19 17 25 25 C 1.39173 * 120.20477 * 359.44770 * 15 14 13 26 26 C 1.37597 * 120.09926 * 0.55723 * 25 15 14 27 27 C 1.54632 * 101.76645 * 25.41479 * 5 4 3 28 28 C 1.34418 * 124.34402 * 270.01759 * 3 2 1 29 29 O 1.21274 * 124.94492 * 0.39155 * 28 3 2 30 30 H 1.09003 * 109.47035 * 60.00399 * 1 2 3 31 31 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47434 * 300.00431 * 1 2 3 33 33 H 1.08991 * 109.47484 * 239.99235 * 2 1 3 34 34 H 1.09002 * 109.46672 * 119.99197 * 2 1 3 35 35 H 1.08991 * 110.24931 * 43.99958 * 4 3 2 36 36 H 1.09010 * 110.24168 * 281.99882 * 4 3 2 37 37 H 0.97004 * 120.00347 * 335.00592 * 7 5 4 38 38 H 1.08003 * 120.00046 * 0.02562 * 10 8 7 39 39 H 1.08003 * 119.99920 * 0.02562 * 11 10 8 40 40 H 1.08002 * 120.05234 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.95149 * 180.02562 * 14 13 12 42 42 H 0.96993 * 119.99812 * 180.02562 * 20 19 17 43 43 H 1.08004 * 119.95204 * 180.27325 * 25 15 14 44 44 H 1.08000 * 120.05090 * 179.69941 * 26 25 15 45 45 H 1.08997 * 110.48855 * 93.87930 * 27 5 4 46 46 H 1.08992 * 110.48526 * 216.52636 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 1.2117 5 6 3.1739 3.3445 0.7486 6 1 4.2326 3.1043 0.8451 7 7 2.8460 4.5642 1.4909 8 6 3.7678 5.5378 1.6283 9 8 4.8725 5.4039 1.1352 10 6 3.4402 6.7557 2.3689 11 6 4.3637 7.7309 2.5070 12 6 4.0348 8.9544 3.2517 13 6 4.9909 9.9673 3.3957 14 6 4.6782 11.1113 4.0933 15 6 3.4159 11.2601 4.6602 16 8 3.1142 12.3866 5.3518 17 6 4.1137 13.2686 5.5508 18 1 5.0794 13.1019 5.0967 19 6 3.9022 14.3904 6.3388 20 7 2.7262 14.5936 6.8913 21 14 5.2873 15.6132 6.6140 22 1 5.7235 16.1692 5.3081 23 1 4.8085 16.7151 7.4868 24 1 6.4311 14.9268 7.2667 25 6 2.4605 10.2586 4.5147 26 6 2.7642 9.1111 3.8189 27 6 2.7687 3.4757 -0.7379 28 6 2.2707 2.0964 -1.1098 29 8 2.1210 1.6944 -2.2442 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8898 34 1 1.8932 -0.5137 0.8901 35 1 2.8325 1.5534 1.9382 36 1 1.3635 2.5306 1.6430 37 1 1.9655 4.6710 1.8837 38 1 2.4598 6.8746 2.8061 39 1 5.3443 7.6117 2.0702 40 1 5.9722 9.8507 2.9599 41 1 5.4148 11.8933 4.2046 42 1 2.5781 15.3782 7.4420 43 1 1.4807 10.3803 4.9525 44 1 2.0238 8.3323 3.7106 45 1 1.9734 4.2122 -0.8530 46 1 3.6316 3.7465 -1.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493273847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:17 Heat of formation + Delta-G solvation = -54.592546 kcal Electronic energy + Delta-G solvation = -27614.157478 eV Core-core repulsion = 23469.847683 eV Total energy + Delta-G solvation = -4144.309795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04258 -39.53863 -39.14536 -37.08621 -36.81705 -35.20891 -33.30158 -32.76860 -32.29573 -30.47608 -29.61448 -28.41910 -27.68034 -25.73125 -24.17741 -23.47215 -22.29634 -21.83065 -20.90715 -19.91885 -19.37262 -18.24884 -17.45979 -17.33301 -17.06895 -16.59801 -16.12201 -15.36515 -15.00514 -14.96077 -14.78852 -14.45079 -14.34786 -14.10155 -13.97246 -13.88497 -13.81407 -13.62821 -13.35340 -13.07693 -12.82760 -12.64208 -12.46354 -12.24043 -11.97706 -11.81537 -11.76873 -11.66898 -11.58152 -11.13616 -11.13042 -10.74713 -10.58066 -10.36046 -9.91801 -9.66646 -9.54423 -9.33722 -9.23438 -8.89614 -8.42707 -7.16676 -6.68790 -4.23606 0.98831 2.09548 2.20298 2.41482 2.49317 2.97730 3.01872 3.03115 3.05908 3.44521 3.79329 3.89301 4.06262 4.41657 4.46905 4.47877 4.59966 4.71176 4.87024 4.88324 4.91132 4.95037 4.99985 5.05892 5.21156 5.21629 5.34894 5.43193 5.48891 5.50009 5.59548 5.61966 5.68458 5.96675 6.05614 6.06631 6.14924 6.39598 6.42346 6.55432 6.63430 6.74409 6.87184 7.08322 7.18850 7.22984 7.36367 7.59536 7.75769 7.76286 8.18192 8.75746 9.42076 10.47560 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.001449 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.279384 B =19314.872982 C =19785.997994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.139 3.861 6 H 0.114 0.886 7 N -0.726 5.726 8 C 0.561 3.439 9 O -0.553 6.553 10 C -0.288 4.288 11 C 0.044 3.956 12 C -0.202 4.202 13 C -0.033 4.033 14 C -0.243 4.243 15 C 0.167 3.833 16 O -0.161 6.161 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.200 4.200 26 C -0.042 4.042 27 C -0.169 4.169 28 C 0.522 3.478 29 O -0.529 6.529 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.403 0.597 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.275 0.725 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -22.940 -7.578 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.026 4.026 5 C 0.032 3.968 6 H 0.132 0.868 7 N -0.378 5.378 8 C 0.353 3.647 9 O -0.433 6.433 10 C -0.309 4.309 11 C 0.024 3.976 12 C -0.203 4.203 13 C -0.052 4.052 14 C -0.262 4.262 15 C 0.110 3.890 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.483 5.483 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.219 4.219 26 C -0.060 4.060 27 C -0.211 4.211 28 C 0.309 3.691 29 O -0.405 6.405 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.160 -23.026 -8.238 24.551 hybrid contribution 0.103 0.682 0.450 0.824 sum -2.057 -22.344 -7.788 23.752 Atomic orbital electron populations 1.22165 0.95626 1.02506 1.02558 1.21377 0.94493 0.80829 1.03324 1.48329 1.66327 1.13952 1.06927 1.22312 0.99743 0.92840 0.87718 1.21650 1.00905 0.84365 0.89882 0.86846 1.45768 1.17130 1.17786 1.57109 1.18442 0.83696 0.83374 0.79146 1.90794 1.22417 1.80339 1.49763 1.22361 1.02223 0.95639 1.10675 1.22304 0.97497 0.89863 0.87890 1.18450 0.95944 0.96329 1.09600 1.20994 0.97393 0.92107 0.94686 1.21101 0.98278 1.00392 1.06415 1.19624 0.92564 0.86702 0.90078 1.83902 1.37453 1.24108 1.60699 1.21442 0.92204 1.01557 1.31724 0.88541 1.25399 0.98205 0.97612 0.95189 1.70003 1.21737 1.27692 1.28893 0.85709 0.79392 0.79008 0.79014 1.19221 1.20057 1.19222 1.20149 0.99909 0.94141 1.07725 1.20874 0.95004 0.95793 0.94321 1.22874 1.04334 0.95738 0.98113 1.20882 0.76440 0.87394 0.84347 1.90731 1.53438 1.75193 1.21118 0.92179 0.91296 0.92332 0.89873 0.90179 0.89352 0.90433 0.76168 0.85769 0.85899 0.86785 0.85111 0.91498 0.86125 0.86395 0.87220 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.12 0.69 6.65 -4.04 -0.03 0.66 16 3 N -0.62 -4.38 2.93 -172.42 -0.51 -4.89 16 4 C 0.10 0.48 7.08 -3.12 -0.02 0.46 16 5 C 0.14 1.00 3.53 -66.30 -0.23 0.76 16 6 H 0.11 0.97 7.54 -51.94 -0.39 0.58 16 7 N -0.73 -5.59 5.15 -53.67 -0.28 -5.87 16 8 C 0.56 6.63 7.74 -13.04 -0.10 6.53 16 9 O -0.55 -8.54 15.87 5.17 0.08 -8.45 16 10 C -0.29 -3.43 9.41 -37.51 -0.35 -3.79 16 11 C 0.04 0.62 9.45 -37.19 -0.35 0.26 16 12 C -0.20 -3.25 5.87 -105.03 -0.62 -3.86 16 13 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 14 C -0.24 -4.86 9.14 -39.47 -0.36 -5.22 16 15 C 0.17 3.73 6.66 -38.89 -0.26 3.47 16 16 O -0.16 -4.28 9.74 0.71 0.01 -4.27 16 17 C -0.39 -10.27 9.48 30.91 0.29 -9.97 16 18 H 0.10 2.30 5.18 -52.48 -0.27 2.03 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.41 13.67 55.48 0.76 -22.65 16 21 Si 0.94 19.15 29.55 -169.99 -5.02 14.13 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.20 -3.84 9.97 -39.47 -0.39 -4.24 16 26 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 27 C -0.17 -1.42 6.59 -26.74 -0.18 -1.59 16 28 C 0.52 5.23 8.02 -10.86 -0.09 5.14 16 29 O -0.53 -7.43 17.59 5.56 0.10 -7.33 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.27 7.80 -51.92 -0.40 -0.14 16 37 H 0.40 2.02 8.41 -40.82 -0.34 1.67 16 38 H 0.12 1.23 6.07 -52.48 -0.32 0.91 16 39 H 0.12 1.71 7.52 -52.48 -0.39 1.32 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.60 5.62 -52.49 -0.29 2.30 16 42 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 44 H 0.12 1.50 6.16 -52.49 -0.32 1.17 16 45 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 46 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -32.84 393.91 -8.17 -41.01 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.09 Total: 5.28 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.16 Total: -12.89 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.02 Total: -33.41 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.19 Total: -20.05 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.84 -8.17 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493273847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.587 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds