Wall clock time and date at job start Wed Apr 1 2020 03:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46965 * 2 1 4 4 C 1.46763 * 124.35100 * 89.99985 * 3 2 1 5 5 C 1.54476 * 105.47326 * 163.00251 * 4 3 2 6 6 H 1.08989 * 110.97110 * 267.25708 * 5 4 3 7 7 N 1.46502 * 110.97062 * 143.52917 * 5 4 3 8 8 C 1.34779 * 120.00004 * 154.99773 * 7 5 4 9 9 O 1.21718 * 119.99908 * 0.02562 * 8 7 5 10 10 C 1.46255 * 119.99865 * 179.97438 * 8 7 5 11 11 C 1.35018 * 120.00031 * 179.97438 * 10 8 7 12 12 C 1.46960 * 120.00380 * 180.02562 * 11 10 8 13 13 C 1.40026 * 120.10267 * 180.02562 * 12 11 10 14 14 C 1.37594 * 119.89660 * 179.97438 * 13 12 11 15 15 C 1.39178 * 120.10071 * 0.27233 * 14 13 12 16 16 O 1.35579 * 119.89553 * 179.70771 * 15 14 13 17 17 C 1.34781 * 117.00320 * 354.44312 * 16 15 14 18 18 H 1.08005 * 119.99725 * 5.05569 * 17 16 15 19 19 C 1.38715 * 120.00342 * 185.05925 * 17 16 15 20 20 N 1.31515 * 119.99717 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47164 * 59.99920 * 21 19 17 23 23 H 1.48499 * 109.46955 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46956 * 299.99763 * 21 19 17 25 25 C 1.39173 * 120.20477 * 359.44770 * 15 14 13 26 26 C 1.37597 * 120.09926 * 0.55723 * 25 15 14 27 27 C 1.54632 * 101.76645 * 25.41479 * 5 4 3 28 28 C 1.34418 * 124.34402 * 270.01759 * 3 2 1 29 29 O 1.21274 * 124.94492 * 0.39155 * 28 3 2 30 30 H 1.09003 * 109.47035 * 60.00399 * 1 2 3 31 31 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47434 * 300.00431 * 1 2 3 33 33 H 1.08991 * 109.47484 * 239.99235 * 2 1 3 34 34 H 1.09002 * 109.46672 * 119.99197 * 2 1 3 35 35 H 1.08991 * 110.24931 * 43.99958 * 4 3 2 36 36 H 1.09010 * 110.24168 * 281.99882 * 4 3 2 37 37 H 0.97004 * 120.00347 * 335.00592 * 7 5 4 38 38 H 1.08003 * 120.00046 * 0.02562 * 10 8 7 39 39 H 1.08003 * 119.99920 * 0.02562 * 11 10 8 40 40 H 1.08002 * 120.05234 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.95149 * 180.02562 * 14 13 12 42 42 H 0.96993 * 119.99812 * 180.02562 * 20 19 17 43 43 H 1.08004 * 119.95204 * 180.27325 * 25 15 14 44 44 H 1.08000 * 120.05090 * 179.69941 * 26 25 15 45 45 H 1.08997 * 110.48855 * 93.87930 * 27 5 4 46 46 H 1.08992 * 110.48526 * 216.52636 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 1.2117 5 6 3.1739 3.3445 0.7486 6 1 4.2326 3.1043 0.8451 7 7 2.8460 4.5642 1.4909 8 6 3.7678 5.5378 1.6283 9 8 4.8725 5.4039 1.1352 10 6 3.4402 6.7557 2.3689 11 6 4.3637 7.7309 2.5070 12 6 4.0348 8.9544 3.2517 13 6 4.9909 9.9673 3.3957 14 6 4.6782 11.1113 4.0933 15 6 3.4159 11.2601 4.6602 16 8 3.1142 12.3866 5.3518 17 6 4.1137 13.2686 5.5508 18 1 5.0794 13.1019 5.0967 19 6 3.9022 14.3904 6.3388 20 7 2.7262 14.5936 6.8913 21 14 5.2873 15.6132 6.6140 22 1 5.7235 16.1692 5.3081 23 1 4.8085 16.7151 7.4868 24 1 6.4311 14.9268 7.2667 25 6 2.4605 10.2586 4.5147 26 6 2.7642 9.1111 3.8189 27 6 2.7687 3.4757 -0.7379 28 6 2.2707 2.0964 -1.1098 29 8 2.1210 1.6944 -2.2442 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8898 34 1 1.8932 -0.5137 0.8901 35 1 2.8325 1.5534 1.9382 36 1 1.3635 2.5306 1.6430 37 1 1.9655 4.6710 1.8837 38 1 2.4598 6.8746 2.8061 39 1 5.3443 7.6117 2.0702 40 1 5.9722 9.8507 2.9599 41 1 5.4148 11.8933 4.2046 42 1 2.5781 15.3782 7.4420 43 1 1.4807 10.3803 4.9525 44 1 2.0238 8.3323 3.7106 45 1 1.9734 4.2122 -0.8530 46 1 3.6316 3.7465 -1.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493273847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:16 Heat of formation + Delta-G solvation = -76.477349 kcal Electronic energy + Delta-G solvation = -27615.106474 eV Core-core repulsion = 23469.847683 eV Total energy + Delta-G solvation = -4145.258792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74564 -40.84714 -40.36246 -38.49381 -37.74514 -35.90728 -34.71260 -34.01208 -33.38595 -31.93735 -30.33831 -29.53338 -28.44054 -27.46514 -25.06646 -24.24296 -23.70402 -22.78991 -21.91916 -20.84064 -20.38117 -19.72837 -18.83202 -18.40598 -17.95844 -17.36746 -16.84000 -16.46746 -16.35781 -16.10067 -15.92364 -15.79792 -15.58649 -15.24688 -14.97283 -14.69806 -14.65529 -14.54919 -14.45626 -14.19628 -14.07220 -13.58141 -13.29730 -13.28826 -13.13308 -12.98554 -12.76826 -12.66501 -12.54407 -12.32763 -12.20833 -12.12887 -12.02427 -11.20581 -11.18743 -11.08292 -10.92635 -10.55178 -10.11235 -9.86254 -9.81488 -8.65085 -8.50829 -6.16983 -0.21138 0.61480 1.16029 1.36694 1.44531 1.48140 1.52167 1.85094 2.16437 2.22562 2.38991 2.88280 3.20205 3.29723 3.45108 3.47037 3.75110 3.90664 3.98057 3.98760 4.11538 4.13080 4.25859 4.34251 4.40161 4.48587 4.50675 4.54589 4.58209 4.68904 4.77300 4.82922 4.86076 4.96770 4.97936 5.05179 5.22484 5.27885 5.31083 5.36825 5.45405 5.53668 5.61834 5.66758 5.85087 5.98857 6.00813 6.13863 6.59949 6.93605 7.04086 7.29671 7.70966 8.70897 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.001449 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.279384 B =19314.872982 C =19785.997994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.103 3.897 5 C 0.142 3.858 6 H 0.102 0.898 7 N -0.702 5.702 8 C 0.557 3.443 9 O -0.588 6.588 10 C -0.243 4.243 11 C 0.014 3.986 12 C -0.170 4.170 13 C -0.042 4.042 14 C -0.250 4.250 15 C 0.128 3.872 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.913 5.913 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.207 4.207 26 C -0.036 4.036 27 C -0.165 4.165 28 C 0.514 3.486 29 O -0.580 6.580 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.422 0.578 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.275 0.725 43 H 0.123 0.877 44 H 0.164 0.836 45 H 0.118 0.882 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -26.531 -7.880 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.346 5.346 4 C -0.020 4.020 5 C 0.035 3.965 6 H 0.120 0.880 7 N -0.354 5.354 8 C 0.349 3.651 9 O -0.471 6.471 10 C -0.263 4.263 11 C -0.006 4.006 12 C -0.171 4.171 13 C -0.060 4.060 14 C -0.270 4.270 15 C 0.076 3.924 16 O -0.126 6.126 17 C -0.493 4.493 18 H 0.122 0.878 19 C -0.216 4.216 20 N -0.550 5.550 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.227 4.227 26 C -0.054 4.054 27 C -0.207 4.207 28 C 0.302 3.698 29 O -0.460 6.460 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.261 0.739 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.182 0.818 45 H 0.136 0.864 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.229 -26.708 -8.537 28.127 hybrid contribution 0.076 1.091 0.206 1.113 sum -2.153 -25.617 -8.330 27.023 Atomic orbital electron populations 1.22116 0.95072 1.03278 1.01821 1.21562 0.94915 0.80060 1.04023 1.48454 1.64877 1.14434 1.06861 1.22475 1.00764 0.91834 0.86903 1.21616 1.00950 0.84883 0.89027 0.88014 1.45548 1.17195 1.16900 1.55775 1.18489 0.83680 0.84009 0.78960 1.90810 1.24197 1.80998 1.51064 1.22753 1.02542 0.94176 1.06851 1.22169 0.98633 0.89812 0.89936 1.18798 0.95260 0.96241 1.06778 1.21325 0.99194 0.91238 0.94234 1.21198 0.97472 1.01442 1.06844 1.20224 0.94443 0.86993 0.90760 1.83883 1.38290 1.26125 1.64270 1.21849 0.92799 1.02255 1.32445 0.87781 1.26578 1.00825 0.99417 0.94780 1.70140 1.24273 1.29006 1.31581 0.84665 0.76145 0.76354 0.79228 1.18179 1.19626 1.18154 1.20441 0.99576 0.94536 1.08107 1.21313 0.95945 0.95454 0.92666 1.22810 1.03959 0.95134 0.98751 1.21149 0.76221 0.88142 0.84284 1.90702 1.55869 1.76254 1.23214 0.94738 0.89900 0.91079 0.91623 0.87063 0.86909 0.87715 0.73936 0.82642 0.85837 0.83924 0.85962 0.91631 0.85941 0.81827 0.86415 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.24 71.98 0.74 -0.54 16 2 C 0.12 0.99 6.65 86.38 0.57 1.57 16 3 N -0.61 -6.87 2.93 -818.00 -2.40 -9.27 16 4 C 0.10 0.50 7.08 86.83 0.61 1.12 16 5 C 0.14 1.50 3.53 46.05 0.16 1.66 16 6 H 0.10 1.43 7.54 -2.39 -0.02 1.41 16 7 N -0.70 -7.16 5.15 -441.91 -2.27 -9.44 16 8 C 0.56 10.53 7.74 86.33 0.67 11.19 16 9 O -0.59 -16.23 15.87 -4.41 -0.07 -16.30 16 10 C -0.24 -4.39 9.41 23.61 0.22 -4.17 16 11 C 0.01 0.34 9.45 23.82 0.23 0.56 16 12 C -0.17 -4.87 5.87 -20.13 -0.12 -4.99 16 13 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 14 C -0.25 -10.22 9.14 22.34 0.20 -10.02 16 15 C 0.13 5.94 6.66 22.72 0.15 6.09 16 16 O -0.22 -12.59 9.74 -20.36 -0.20 -12.79 16 17 C -0.42 -23.24 9.48 67.93 0.64 -22.60 16 18 H 0.10 5.28 5.18 -2.91 -0.02 5.27 16 19 C -0.02 -0.93 5.49 84.85 0.47 -0.47 16 20 N -0.91 -53.79 13.67 21.62 0.30 -53.49 16 21 Si 1.02 41.00 29.55 68.60 2.03 43.03 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 C -0.21 -7.89 9.97 22.34 0.22 -7.67 16 26 C -0.04 -1.03 9.40 22.55 0.21 -0.82 16 27 C -0.17 -2.42 6.59 30.59 0.20 -2.22 16 28 C 0.51 9.64 8.02 87.90 0.71 10.35 16 29 O -0.58 -16.48 17.59 -3.01 -0.05 -16.53 16 30 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.07 0.82 7.93 -2.39 -0.02 0.80 16 34 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.10 0.05 7.80 -2.38 -0.02 0.03 16 37 H 0.42 1.44 8.41 -92.71 -0.78 0.66 16 38 H 0.16 1.87 6.07 -2.91 -0.02 1.85 16 39 H 0.12 3.00 7.52 -2.91 -0.02 2.97 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 41 H 0.12 5.09 5.62 -2.91 -0.02 5.07 16 42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 44 H 0.16 3.12 6.16 -2.91 -0.02 3.10 16 45 H 0.12 1.52 8.08 -2.39 -0.02 1.50 16 46 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.33 393.91 3.69 -76.65 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.24 Total: 20.22 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 6.11 Total: -22.09 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -4.38 Total: -72.19 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.32 Total: -45.62 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -80.33 3.69 -76.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493273847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.171 kcal (2) G-P(sol) polarization free energy of solvation -80.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds