Wall clock time and date at job start Wed Apr 1 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.69847 * 2 1 4 4 C 1.53345 * 109.67575 * 239.48784 * 2 1 3 5 5 C 1.52918 * 108.81044 * 172.81289 * 4 2 1 6 6 N 1.45753 * 110.48688 * 50.67105 * 5 4 2 7 7 C 1.33356 * 124.10918 * 340.94547 * 6 5 4 8 8 O 1.21282 * 118.24929 * 182.17394 * 7 6 5 9 9 C 1.50175 * 123.50534 * 2.20442 * 7 6 5 10 10 H 1.09005 * 109.39996 * 222.28764 * 9 7 6 11 11 N 1.46500 * 109.40738 * 102.45920 * 9 7 6 12 12 C 1.34778 * 119.99671 * 84.99187 * 11 9 7 13 13 O 1.21717 * 120.00185 * 0.02562 * 12 11 9 14 14 C 1.46255 * 119.99502 * 180.02562 * 12 11 9 15 15 C 1.35028 * 119.99855 * 173.22523 * 14 12 11 16 16 C 1.46961 * 119.99708 * 348.68423 * 15 14 12 17 17 C 1.40026 * 120.09853 * 316.39791 * 16 15 14 18 18 C 1.37603 * 119.89175 * 179.73966 * 17 16 15 19 19 C 1.39175 * 120.10521 * 0.51857 * 18 17 16 20 20 O 1.35567 * 119.90155 * 179.74145 * 19 18 17 21 21 C 1.34784 * 116.99910 * 174.37661 * 20 19 18 22 22 H 1.07996 * 120.00427 * 5.05742 * 21 20 19 23 23 C 1.38718 * 119.99567 * 185.05728 * 21 20 19 24 24 N 1.31504 * 120.00362 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46814 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47033 * 120.00091 * 25 23 21 28 28 H 1.48498 * 109.47211 * 240.00382 * 25 23 21 29 29 C 1.39178 * 120.20308 * 359.75553 * 19 18 17 30 30 C 1.37601 * 120.09901 * 359.97438 * 29 19 18 31 31 H 1.09000 * 109.46691 * 180.51737 * 1 2 3 32 32 H 1.09001 * 109.47073 * 300.51268 * 1 2 3 33 33 H 1.08994 * 109.47511 * 60.51364 * 1 2 3 34 34 H 1.09000 * 109.60427 * 52.97490 * 4 2 1 35 35 H 1.09005 * 109.59610 * 292.65324 * 4 2 1 36 36 H 1.09006 * 109.29882 * 170.98037 * 5 4 2 37 37 H 1.08990 * 109.30364 * 290.35436 * 5 4 2 38 38 H 0.97002 * 117.94539 * 160.91705 * 6 5 4 39 39 H 0.96995 * 119.99861 * 265.00334 * 11 9 7 40 40 H 1.07996 * 120.00579 * 353.22293 * 14 12 11 41 41 H 1.07999 * 120.00003 * 168.68943 * 15 14 12 42 42 H 1.08000 * 120.05827 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.94617 * 180.27376 * 18 17 16 44 44 H 0.96999 * 120.00161 * 179.97438 * 24 23 21 45 45 H 1.07989 * 119.95655 * 179.97438 * 29 19 18 46 46 H 1.08004 * 120.05176 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0463 -0.7331 -1.2440 5 6 3.5646 -0.5673 -1.3193 6 7 4.1804 -0.9231 -0.0471 7 6 3.5231 -0.9802 1.1118 8 8 4.1498 -1.2496 2.1146 9 6 2.0481 -0.7294 1.2416 10 1 1.8609 -0.1192 2.1252 11 7 1.3467 -2.0085 1.3760 12 6 1.2250 -2.5861 2.5877 13 8 1.6973 -2.0447 3.5702 14 6 0.5253 -3.8634 2.7218 15 6 0.5206 -4.5093 3.9076 16 6 1.4135 -4.0680 4.9882 17 6 2.7451 -3.7376 4.7080 18 6 3.5760 -3.3198 5.7222 19 6 3.0978 -3.2356 7.0264 20 8 3.9214 -2.8285 8.0233 21 6 3.3697 -2.6562 9.2409 22 1 2.3355 -2.9191 9.4073 23 6 4.1303 -2.1411 10.2803 24 7 5.3894 -1.8204 10.0776 25 14 3.3655 -1.9015 11.9678 26 1 1.9457 -2.3353 11.9337 27 1 4.1067 -2.7127 12.9668 28 1 3.4363 -0.4668 12.3442 29 6 1.7766 -3.5685 7.3106 30 6 0.9369 -3.9820 6.3020 31 1 -0.3633 -1.0276 0.0093 32 1 -0.3633 0.5218 0.8854 33 1 -0.3634 0.5058 -0.8945 34 1 1.5872 -0.3074 -2.1362 35 1 1.7969 -1.7920 -1.1741 36 1 3.9590 -1.2134 -2.1037 37 1 3.8024 0.4694 -1.5573 38 1 5.1276 -1.1319 -0.0432 39 1 0.9702 -2.4398 0.5931 40 1 0.0123 -4.2899 1.8726 41 1 -0.1392 -5.3503 4.0618 42 1 3.1184 -3.8070 3.6969 43 1 4.6020 -3.0605 5.5063 44 1 5.9212 -1.4599 10.8044 45 1 1.4098 -3.5021 8.3241 46 1 -0.0881 -4.2405 6.5234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493314513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:04 Heat of formation + Delta-G solvation = -41.091681 kcal Electronic energy + Delta-G solvation = -30091.956029 eV Core-core repulsion = 25948.231675 eV Total energy + Delta-G solvation = -4143.724354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98324 -39.30418 -38.49192 -37.18351 -36.35936 -34.95920 -32.97834 -32.69601 -32.02038 -29.98843 -29.58180 -28.34393 -27.38375 -25.34532 -24.12731 -23.03739 -21.74085 -21.69333 -21.04711 -19.43736 -19.10849 -17.83244 -17.50998 -17.05562 -16.70626 -16.50177 -15.99449 -15.44365 -14.93403 -14.54343 -14.45514 -14.28811 -14.15686 -13.90002 -13.62219 -13.48010 -13.36329 -13.22608 -12.91633 -12.88403 -12.72032 -12.40394 -12.22905 -12.09294 -11.64490 -11.61953 -11.34612 -11.25329 -11.04837 -10.94534 -10.59745 -10.49842 -10.33042 -10.15641 -9.42028 -9.33345 -9.23206 -9.06421 -8.89886 -8.61843 -7.79407 -6.76148 -6.37344 -3.92832 1.30824 2.41282 2.56575 2.80094 3.06337 3.18623 3.20508 3.25162 3.48158 3.72845 4.03972 4.15747 4.21848 4.26297 4.41943 4.80331 4.82793 4.92752 5.03645 5.11505 5.19780 5.21940 5.28456 5.31404 5.36858 5.39924 5.47913 5.57698 5.65885 5.75399 5.82841 5.86332 5.98018 6.35160 6.40375 6.41604 6.52659 6.63115 6.72046 6.91747 7.15221 7.16437 7.22436 7.48773 7.55443 7.61848 7.64968 8.04174 8.09899 8.18606 8.59689 9.08242 9.82251 10.80798 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002657 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.428152 B =10535.136006 C =11377.129882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.133 4.133 5 C 0.111 3.889 6 N -0.726 5.726 7 C 0.499 3.501 8 O -0.514 6.514 9 C 0.145 3.855 10 H 0.119 0.881 11 N -0.723 5.723 12 C 0.536 3.464 13 O -0.486 6.486 14 C -0.269 4.269 15 C 0.031 3.969 16 C -0.194 4.194 17 C 0.018 3.982 18 C -0.196 4.196 19 C 0.173 3.827 20 O -0.174 6.174 21 C -0.388 4.388 22 H 0.094 0.906 23 C 0.038 3.962 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.252 4.252 30 C -0.042 4.042 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.396 0.604 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 0.705 -26.750 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.109 0.891 4 C -0.171 4.171 5 C -0.014 4.014 6 N -0.381 5.381 7 C 0.283 3.717 8 O -0.386 6.386 9 C 0.036 3.964 10 H 0.136 0.864 11 N -0.380 5.380 12 C 0.326 3.674 13 O -0.359 6.359 14 C -0.290 4.290 15 C 0.012 3.988 16 C -0.195 4.195 17 C 0.000 4.000 18 C -0.215 4.215 19 C 0.118 3.882 20 O -0.076 6.076 21 C -0.465 4.465 22 H 0.111 0.889 23 C -0.167 4.167 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.272 4.272 30 C -0.060 4.060 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.233 0.767 39 H 0.231 0.769 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.988 1.172 -25.272 27.200 hybrid contribution -0.233 -0.047 0.113 0.263 sum -10.222 1.125 -25.159 27.180 Atomic orbital electron populations 1.21763 0.93417 1.02536 1.02369 1.21608 0.97398 1.00125 0.93278 0.89104 1.21976 0.94639 1.01642 0.98871 1.21333 0.93649 1.00804 0.85570 1.45570 1.13471 1.71462 1.07579 1.20704 0.90790 0.77368 0.82879 1.90901 1.67445 1.45397 1.34893 1.20804 0.87511 0.87401 1.00635 0.86356 1.45880 1.59045 1.22866 1.10245 1.18572 0.79802 0.86424 0.82628 1.91053 1.45120 1.63737 1.36026 1.22520 1.09765 0.97331 0.99420 1.22338 0.91032 0.93965 0.91498 1.18302 0.94357 1.14244 0.92607 1.20445 0.91805 0.91479 0.96305 1.20026 1.00818 1.10370 0.90330 1.19543 0.89263 0.90577 0.88836 1.83916 1.34561 1.72389 1.16733 1.21440 0.97619 1.43507 0.83886 0.88883 1.25324 0.95551 0.96183 0.99602 1.70041 1.06736 1.39741 1.32959 0.85639 0.78987 0.78361 0.80381 1.19062 1.20172 1.20156 1.20930 0.94626 1.11759 0.99848 1.20714 0.97545 0.96298 0.91469 0.92125 0.91915 0.92112 0.89394 0.90977 0.90629 0.91666 0.76684 0.76890 0.86259 0.86093 0.88068 0.86837 0.92084 0.85723 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.93 37.16 0.33 -0.47 16 2 C -0.10 -0.68 2.58 -90.43 -0.23 -0.91 16 3 H 0.09 0.56 8.13 -51.93 -0.42 0.13 16 4 C -0.13 -0.57 5.27 -26.59 -0.14 -0.71 16 5 C 0.11 0.54 7.17 -4.49 -0.03 0.51 16 6 N -0.73 -6.63 5.45 -61.39 -0.33 -6.97 16 7 C 0.50 6.76 7.25 -11.87 -0.09 6.68 16 8 O -0.51 -10.15 17.41 5.56 0.10 -10.05 16 9 C 0.15 1.64 2.29 -69.32 -0.16 1.49 16 10 H 0.12 1.69 7.57 -51.93 -0.39 1.30 16 11 N -0.72 -7.97 4.17 -56.61 -0.24 -8.21 16 12 C 0.54 8.24 6.73 -13.04 -0.09 8.16 16 13 O -0.49 -10.10 11.45 5.17 0.06 -10.04 16 14 C -0.27 -3.50 9.90 -37.50 -0.37 -3.87 16 15 C 0.03 0.46 9.80 -37.19 -0.36 0.09 16 16 C -0.19 -3.82 4.54 -105.02 -0.48 -4.29 16 17 C 0.02 0.40 6.59 -39.14 -0.26 0.14 16 18 C -0.20 -4.95 9.97 -39.47 -0.39 -5.35 16 19 C 0.17 4.67 6.66 -38.88 -0.26 4.41 16 20 O -0.17 -5.37 9.74 0.74 0.01 -5.36 16 21 C -0.39 -11.52 9.48 30.91 0.29 -11.23 16 22 H 0.09 2.56 5.18 -52.49 -0.27 2.29 16 23 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 24 N -0.86 -26.45 13.67 55.48 0.76 -25.70 16 25 Si 0.94 21.47 29.55 -169.99 -5.02 16.45 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 C -0.25 -6.06 9.14 -39.47 -0.36 -6.42 16 30 C -0.04 -0.86 9.78 -39.14 -0.38 -1.24 16 31 H 0.06 0.32 6.75 -51.93 -0.35 -0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.31 6.96 -51.93 -0.36 -0.05 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.40 3.52 8.80 -40.82 -0.36 3.17 16 39 H 0.40 2.99 6.53 -40.82 -0.27 2.72 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.10 2.16 7.02 -52.49 -0.37 1.79 16 43 H 0.11 2.90 8.06 -52.48 -0.42 2.48 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.13 2.95 5.62 -52.49 -0.29 2.65 16 46 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -39.14 378.16 -8.08 -47.21 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.03 Total: 8.99 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.08 Total: -12.03 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.19 Total: -40.87 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.16 Total: -25.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.14 -8.08 -47.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493314513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.123 kcal (2) G-P(sol) polarization free energy of solvation -39.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds