Wall clock time and date at job start Wed Apr 1 2020 02:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.69847 * 2 1 4 4 C 1.53345 * 109.67575 * 239.48784 * 2 1 3 5 5 C 1.52918 * 108.81044 * 172.81289 * 4 2 1 6 6 N 1.45753 * 110.48688 * 50.67105 * 5 4 2 7 7 C 1.33356 * 124.10918 * 340.94547 * 6 5 4 8 8 O 1.21282 * 118.24929 * 182.17394 * 7 6 5 9 9 C 1.50175 * 123.50534 * 2.20442 * 7 6 5 10 10 H 1.09005 * 109.39996 * 222.28764 * 9 7 6 11 11 N 1.46500 * 109.40738 * 102.45920 * 9 7 6 12 12 C 1.34778 * 119.99671 * 84.99187 * 11 9 7 13 13 O 1.21717 * 120.00185 * 0.02562 * 12 11 9 14 14 C 1.46255 * 119.99502 * 180.02562 * 12 11 9 15 15 C 1.35028 * 119.99855 * 173.22523 * 14 12 11 16 16 C 1.46961 * 119.99708 * 348.68423 * 15 14 12 17 17 C 1.40026 * 120.09853 * 316.39791 * 16 15 14 18 18 C 1.37603 * 119.89175 * 179.73966 * 17 16 15 19 19 C 1.39175 * 120.10521 * 0.51857 * 18 17 16 20 20 O 1.35567 * 119.90155 * 179.74145 * 19 18 17 21 21 C 1.34784 * 116.99910 * 174.37661 * 20 19 18 22 22 H 1.07996 * 120.00427 * 5.05742 * 21 20 19 23 23 C 1.38718 * 119.99567 * 185.05728 * 21 20 19 24 24 N 1.31504 * 120.00362 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46814 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47033 * 120.00091 * 25 23 21 28 28 H 1.48498 * 109.47211 * 240.00382 * 25 23 21 29 29 C 1.39178 * 120.20308 * 359.75553 * 19 18 17 30 30 C 1.37601 * 120.09901 * 359.97438 * 29 19 18 31 31 H 1.09000 * 109.46691 * 180.51737 * 1 2 3 32 32 H 1.09001 * 109.47073 * 300.51268 * 1 2 3 33 33 H 1.08994 * 109.47511 * 60.51364 * 1 2 3 34 34 H 1.09000 * 109.60427 * 52.97490 * 4 2 1 35 35 H 1.09005 * 109.59610 * 292.65324 * 4 2 1 36 36 H 1.09006 * 109.29882 * 170.98037 * 5 4 2 37 37 H 1.08990 * 109.30364 * 290.35436 * 5 4 2 38 38 H 0.97002 * 117.94539 * 160.91705 * 6 5 4 39 39 H 0.96995 * 119.99861 * 265.00334 * 11 9 7 40 40 H 1.07996 * 120.00579 * 353.22293 * 14 12 11 41 41 H 1.07999 * 120.00003 * 168.68943 * 15 14 12 42 42 H 1.08000 * 120.05827 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.94617 * 180.27376 * 18 17 16 44 44 H 0.96999 * 120.00161 * 179.97438 * 24 23 21 45 45 H 1.07989 * 119.95655 * 179.97438 * 29 19 18 46 46 H 1.08004 * 120.05176 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0463 -0.7331 -1.2440 5 6 3.5646 -0.5673 -1.3193 6 7 4.1804 -0.9231 -0.0471 7 6 3.5231 -0.9802 1.1118 8 8 4.1498 -1.2496 2.1146 9 6 2.0481 -0.7294 1.2416 10 1 1.8609 -0.1192 2.1252 11 7 1.3467 -2.0085 1.3760 12 6 1.2250 -2.5861 2.5877 13 8 1.6973 -2.0447 3.5702 14 6 0.5253 -3.8634 2.7218 15 6 0.5206 -4.5093 3.9076 16 6 1.4135 -4.0680 4.9882 17 6 2.7451 -3.7376 4.7080 18 6 3.5760 -3.3198 5.7222 19 6 3.0978 -3.2356 7.0264 20 8 3.9214 -2.8285 8.0233 21 6 3.3697 -2.6562 9.2409 22 1 2.3355 -2.9191 9.4073 23 6 4.1303 -2.1411 10.2803 24 7 5.3894 -1.8204 10.0776 25 14 3.3655 -1.9015 11.9678 26 1 1.9457 -2.3353 11.9337 27 1 4.1067 -2.7127 12.9668 28 1 3.4363 -0.4668 12.3442 29 6 1.7766 -3.5685 7.3106 30 6 0.9369 -3.9820 6.3020 31 1 -0.3633 -1.0276 0.0093 32 1 -0.3633 0.5218 0.8854 33 1 -0.3634 0.5058 -0.8945 34 1 1.5872 -0.3074 -2.1362 35 1 1.7969 -1.7920 -1.1741 36 1 3.9590 -1.2134 -2.1037 37 1 3.8024 0.4694 -1.5573 38 1 5.1276 -1.1319 -0.0432 39 1 0.9702 -2.4398 0.5931 40 1 0.0123 -4.2899 1.8726 41 1 -0.1392 -5.3503 4.0618 42 1 3.1184 -3.8070 3.6969 43 1 4.6020 -3.0605 5.5063 44 1 5.9212 -1.4599 10.8044 45 1 1.4098 -3.5021 8.3241 46 1 -0.0881 -4.2405 6.5234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493314513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:03 Heat of formation + Delta-G solvation = -72.294298 kcal Electronic energy + Delta-G solvation = -30093.309076 eV Core-core repulsion = 25948.231675 eV Total energy + Delta-G solvation = -4145.077401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95964 -40.88738 -40.09953 -38.34277 -37.91399 -35.93788 -34.60506 -33.98100 -33.54279 -31.83220 -30.41951 -29.57655 -28.46763 -27.40965 -24.98914 -24.18065 -23.53343 -22.60778 -22.45672 -20.73733 -19.97311 -19.75007 -18.93812 -18.37910 -17.95793 -17.57892 -17.05167 -16.43023 -16.37332 -16.06327 -15.91598 -15.79107 -15.53353 -15.16001 -15.07684 -14.79214 -14.56674 -14.38422 -14.17078 -14.13869 -13.83453 -13.71928 -13.56986 -13.34793 -13.05714 -12.76903 -12.65404 -12.36293 -12.24447 -12.20802 -12.09576 -11.81167 -11.64979 -11.25399 -11.23298 -10.98083 -10.68345 -10.38492 -10.06704 -10.01071 -9.59843 -8.56904 -8.49481 -6.17581 -0.01916 0.69788 1.10439 1.31574 1.38720 1.44342 1.52231 2.16114 2.19135 2.45019 2.60645 2.85696 3.18655 3.46612 3.51219 3.62002 3.73026 3.85594 3.99018 4.06228 4.13554 4.15403 4.43112 4.46025 4.52087 4.53281 4.56975 4.60092 4.75437 4.84010 4.97369 5.01609 5.04603 5.08059 5.12559 5.23641 5.24972 5.28339 5.41416 5.42227 5.45780 5.66775 5.70332 5.81864 5.84265 6.01184 6.23886 6.28783 6.65062 6.93596 7.20311 7.45495 7.76941 8.74473 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002657 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.428152 B =10535.136006 C =11377.129882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.094 0.906 4 C -0.128 4.128 5 C 0.100 3.900 6 N -0.712 5.712 7 C 0.493 3.507 8 O -0.594 6.594 9 C 0.145 3.855 10 H 0.077 0.923 11 N -0.698 5.698 12 C 0.520 3.480 13 O -0.550 6.550 14 C -0.229 4.229 15 C 0.006 3.994 16 C -0.162 4.162 17 C 0.021 3.979 18 C -0.222 4.222 19 C 0.129 3.871 20 O -0.234 6.234 21 C -0.416 4.416 22 H 0.105 0.895 23 C -0.028 4.028 24 N -0.924 5.924 25 Si 1.026 2.974 26 H -0.248 1.248 27 H -0.264 1.264 28 H -0.268 1.268 29 C -0.257 4.257 30 C -0.044 4.044 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.419 0.581 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.273 0.727 45 H 0.123 0.877 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 -0.637 -31.261 35.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.022 4.022 6 N -0.363 5.363 7 C 0.278 3.722 8 O -0.473 6.473 9 C 0.036 3.964 10 H 0.095 0.905 11 N -0.356 5.356 12 C 0.310 3.690 13 O -0.428 6.428 14 C -0.250 4.250 15 C -0.013 4.013 16 C -0.162 4.162 17 C 0.003 3.997 18 C -0.242 4.242 19 C 0.078 3.922 20 O -0.141 6.141 21 C -0.492 4.492 22 H 0.122 0.878 23 C -0.224 4.224 24 N -0.562 5.562 25 Si 0.844 3.156 26 H -0.171 1.171 27 H -0.189 1.189 28 H -0.193 1.193 29 C -0.276 4.276 30 C -0.062 4.062 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.233 0.767 39 H 0.258 0.742 40 H 0.198 0.802 41 H 0.193 0.807 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.923 -0.189 -29.976 33.485 hybrid contribution 1.130 0.375 0.871 1.476 sum -13.792 0.186 -29.104 32.208 Atomic orbital electron populations 1.21764 0.92195 1.03132 1.02701 1.21611 0.98239 0.99857 0.91721 0.88812 1.22041 0.93853 1.01917 0.98711 1.21782 0.94335 1.02542 0.83590 1.45641 1.13562 1.69067 1.08048 1.21134 0.91637 0.76472 0.82966 1.90881 1.69124 1.49443 1.37858 1.20767 0.86566 0.87384 1.01710 0.90538 1.45626 1.57540 1.22438 1.09959 1.19334 0.79340 0.87393 0.82931 1.91065 1.47807 1.65475 1.38462 1.23072 1.06612 0.94887 1.00397 1.22619 0.91978 0.96708 0.89979 1.18894 0.93764 1.09284 0.94300 1.20527 0.92898 0.91066 0.95227 1.20095 1.00445 1.12375 0.91241 1.19951 0.90857 0.92628 0.88762 1.83886 1.36498 1.75785 1.17893 1.21982 0.98485 1.44476 0.84221 0.87794 1.26776 0.96001 0.95293 1.04377 1.70206 1.08881 1.42295 1.34810 0.84444 0.78759 0.78626 0.73734 1.17113 1.18877 1.19336 1.21091 0.93753 1.11765 1.01036 1.21211 0.99126 0.95046 0.90811 0.91296 0.93994 0.89477 0.85730 0.90329 0.87742 0.89950 0.76675 0.74184 0.80151 0.80739 0.87728 0.89651 0.91764 0.85884 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.93 71.98 0.64 -0.42 16 2 C -0.10 -0.97 2.58 -10.67 -0.03 -1.00 16 3 H 0.09 0.94 8.13 -2.38 -0.02 0.92 16 4 C -0.13 -0.47 5.27 30.68 0.16 -0.30 16 5 C 0.10 0.60 7.17 86.49 0.62 1.22 16 6 N -0.71 -12.32 5.45 -467.32 -2.55 -14.86 16 7 C 0.49 13.81 7.25 87.71 0.64 14.45 16 8 O -0.59 -25.63 17.41 -3.03 -0.05 -25.69 16 9 C 0.14 3.25 2.29 44.09 0.10 3.35 16 10 H 0.08 2.39 7.57 -2.38 -0.02 2.37 16 11 N -0.70 -13.76 4.17 -451.22 -1.88 -15.64 16 12 C 0.52 15.01 6.73 86.33 0.58 15.59 16 13 O -0.55 -23.50 11.45 -4.40 -0.05 -23.55 16 14 C -0.23 -4.72 9.90 23.62 0.23 -4.48 16 15 C 0.01 0.15 9.80 23.82 0.23 0.38 16 16 C -0.16 -6.12 4.54 -20.13 -0.09 -6.21 16 17 C 0.02 0.97 6.59 22.55 0.15 1.12 16 18 C -0.22 -12.38 9.97 22.34 0.22 -12.16 16 19 C 0.13 7.62 6.66 22.72 0.15 7.77 16 20 O -0.23 -16.04 9.74 -20.27 -0.20 -16.24 16 21 C -0.42 -26.63 9.48 67.93 0.64 -25.98 16 22 H 0.10 6.09 5.18 -2.91 -0.02 6.07 16 23 C -0.03 -1.70 5.49 84.86 0.47 -1.23 16 24 N -0.92 -61.36 13.67 21.62 0.30 -61.07 16 25 Si 1.03 46.06 29.55 68.60 2.03 48.09 16 26 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 C -0.26 -12.89 9.14 22.35 0.20 -12.68 16 30 C -0.04 -1.74 9.78 22.55 0.22 -1.52 16 31 H 0.07 0.40 6.75 -2.39 -0.02 0.39 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.08 0.23 6.96 -2.38 -0.02 0.22 16 36 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 37 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.40 7.00 8.80 -92.71 -0.82 6.18 16 39 H 0.42 4.32 6.53 -92.71 -0.61 3.71 16 40 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.10 4.65 7.02 -2.91 -0.02 4.63 16 43 H 0.09 5.03 8.06 -2.91 -0.02 5.01 16 44 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 45 H 0.12 6.07 5.62 -2.92 -0.02 6.06 16 46 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -103.43 378.16 2.36 -101.07 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.38 Total: 30.00 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 5.15 Total: -22.11 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -4.13 Total: -91.57 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -0.30 Total: -65.48 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -103.43 2.36 -101.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493314513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.778 kcal (2) G-P(sol) polarization free energy of solvation -103.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds