Wall clock time and date at job start Wed Apr 1 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.44635 * 2 1 4 4 O 1.43001 * 109.41876 * 240.07254 * 2 1 3 5 5 C 1.35693 * 116.73428 * 286.36477 * 4 2 1 6 6 C 1.39408 * 119.54913 * 327.17266 * 5 4 2 7 7 C 1.38400 * 120.06878 * 179.90653 * 6 5 4 8 8 C 1.38576 * 120.15625 * 0.03541 * 7 6 5 9 9 C 1.37779 * 120.41916 * 359.96718 * 8 7 6 10 10 C 1.39780 * 120.71630 * 146.89854 * 5 4 2 11 11 C 1.47541 * 120.23628 * 0.31220 * 10 5 4 12 12 O 1.21584 * 119.99891 * 53.45348 * 11 10 5 13 13 N 1.34776 * 120.00247 * 233.45238 * 11 10 5 14 14 C 1.46930 * 120.62773 * 5.51099 * 13 11 10 15 15 C 1.53621 * 108.54115 * 126.36869 * 14 13 11 16 16 C 1.53047 * 109.24178 * 54.85971 * 15 14 13 17 17 C 1.53045 * 109.53448 * 298.50821 * 16 15 14 18 18 H 1.08997 * 109.49742 * 301.41512 * 17 16 15 19 19 C 1.50699 * 109.49634 * 181.31815 * 17 16 15 20 20 H 1.07997 * 119.99833 * 0.15981 * 19 17 16 21 21 C 1.37873 * 119.99949 * 180.16337 * 19 17 16 22 22 N 1.31511 * 120.00012 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00088 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46955 * 59.99743 * 23 21 19 25 25 H 1.48494 * 109.47352 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47216 * 300.00224 * 23 21 19 27 27 C 1.46922 * 120.63104 * 185.79658 * 13 11 10 28 28 N 1.40256 * 119.21769 * 359.93351 * 6 5 4 29 29 C 1.35086 * 118.96224 * 15.46260 * 28 6 5 30 30 O 1.21289 * 120.13831 * 181.69168 * 29 28 6 31 31 H 1.08997 * 109.47061 * 300.06461 * 1 2 3 32 32 H 1.08994 * 109.47213 * 60.06649 * 1 2 3 33 33 H 1.09003 * 109.47283 * 180.02562 * 1 2 3 34 34 H 1.07999 * 119.92084 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.79306 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.95180 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.58753 * 246.20395 * 14 13 11 38 38 H 1.08999 * 109.58347 * 6.62456 * 14 13 11 39 39 H 1.08996 * 109.63515 * 294.86538 * 15 14 13 40 40 H 1.09005 * 109.42764 * 174.72219 * 15 14 13 41 41 H 1.08998 * 109.46072 * 178.49318 * 16 15 14 42 42 H 1.08998 * 109.44988 * 58.52101 * 16 15 14 43 43 H 0.97008 * 119.99922 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.58859 * 353.36751 * 27 13 11 45 45 H 1.08998 * 109.58935 * 113.80166 * 27 13 11 46 46 H 0.97004 * 120.51704 * 195.48850 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6729 -1.1688 5 6 1.8864 -2.0244 -1.1860 6 6 1.9966 -2.7395 0.0056 7 6 1.8750 -4.1182 0.0008 8 6 1.6442 -4.7925 -1.1877 9 6 1.5331 -4.0990 -2.3730 10 6 1.6491 -2.7051 -2.3836 11 6 1.5314 -1.9594 -3.6513 12 8 2.4106 -1.1899 -3.9878 13 7 0.4494 -2.1312 -4.4362 14 6 -0.6757 -2.9635 -3.9885 15 6 -1.9665 -2.1373 -4.0932 16 6 -2.1092 -1.6032 -5.5204 17 6 -0.9253 -0.6896 -5.8456 18 1 -0.8928 0.1324 -5.1305 19 6 -1.0832 -0.1386 -7.2394 20 1 -1.9433 -0.4104 -7.8332 21 6 -0.1295 0.7124 -7.7564 22 7 0.9177 1.0437 -7.0331 23 14 -0.3249 1.3948 -9.4843 24 1 -1.5856 2.1750 -9.5687 25 1 0.8257 2.2786 -9.8005 26 1 -0.3706 0.2737 -10.4570 27 6 0.3751 -1.4949 -5.7584 28 7 2.2304 -2.0452 1.2016 29 6 2.0318 -0.7094 1.2320 30 8 2.2569 -0.0832 2.2461 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 -0.3634 -1.0277 0.0005 34 1 1.9603 -4.6698 0.9253 35 1 1.5506 -5.8685 -1.1847 36 1 1.3527 -4.6322 -3.2947 37 1 -0.7516 -3.8470 -4.6224 38 1 -0.5169 -3.2663 -2.9536 39 1 -1.9243 -1.3017 -3.3946 40 1 -2.8219 -2.7692 -3.8541 41 1 -3.0377 -1.0386 -5.6057 42 1 -2.1264 -2.4385 -6.2204 43 1 1.5884 1.6427 -7.3968 44 1 1.2272 -0.8284 -5.8916 45 1 0.3830 -2.2610 -6.5337 46 1 2.5304 -2.5169 1.9944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:01 Heat of formation + Delta-G solvation = -75.346124 kcal Electronic energy + Delta-G solvation = -31400.917848 eV Core-core repulsion = 27255.708110 eV Total energy + Delta-G solvation = -4145.209738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83002 -39.78045 -38.60672 -37.73057 -36.61184 -35.28744 -33.35984 -32.13810 -31.82130 -30.72295 -29.63117 -29.25636 -25.43531 -25.04444 -24.97434 -23.71871 -23.13433 -21.82588 -20.27137 -19.74770 -19.17334 -18.57451 -17.63352 -16.93340 -16.40833 -16.23855 -15.90633 -15.65564 -15.52580 -15.08800 -14.85438 -14.55952 -14.53621 -14.02093 -13.70101 -13.35258 -13.23183 -13.11362 -12.85085 -12.67593 -12.59137 -12.34600 -12.31306 -11.99979 -11.91861 -11.70575 -11.35166 -11.15413 -10.96214 -10.81987 -10.52545 -10.38546 -10.23315 -10.21036 -9.88412 -9.37736 -9.12751 -8.92783 -8.75544 -8.41986 -8.18654 -7.73399 -5.97701 -4.07241 0.74050 0.90818 2.03216 2.46671 3.07419 3.10368 3.32443 3.39116 3.39964 3.48920 3.68259 3.81696 4.36538 4.44373 4.56974 4.67926 4.74060 4.89316 4.94474 5.06337 5.30777 5.32252 5.36111 5.38201 5.44735 5.49255 5.63937 5.69802 5.84062 5.89160 5.97135 6.13089 6.15612 6.19683 6.30369 6.38622 6.51941 6.59643 6.67162 6.84631 6.97568 7.09300 7.16939 7.28817 7.49988 7.65008 7.88167 8.00623 8.24016 8.39749 8.84675 8.97015 9.58489 11.07168 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003456 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.134369 B = 8099.521679 C = 8783.071165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.153 0.847 4 O -0.276 6.276 5 C 0.125 3.875 6 C 0.083 3.917 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.080 4.080 10 C -0.105 4.105 11 C 0.552 3.448 12 O -0.514 6.514 13 N -0.599 5.599 14 C 0.106 3.894 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.041 3.959 18 H 0.029 0.971 19 C -0.523 4.523 20 H 0.057 0.943 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.113 3.887 28 N -0.658 5.658 29 C 0.499 3.501 30 O -0.513 6.513 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.043 0.957 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -12.775 15.628 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.016 3.984 3 H 0.171 0.829 4 O -0.189 6.189 5 C 0.077 3.923 6 C -0.012 4.012 7 C -0.133 4.133 8 C -0.136 4.136 9 C -0.100 4.100 10 C -0.109 4.109 11 C 0.338 3.662 12 O -0.389 6.389 13 N -0.332 5.332 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.022 3.978 18 H 0.047 0.953 19 C -0.562 4.562 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.006 4.006 28 N -0.305 5.305 29 C 0.286 3.714 30 O -0.387 6.387 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.062 0.938 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.758 -11.583 15.725 19.545 hybrid contribution -0.016 -0.021 -0.323 0.324 sum -0.775 -11.605 15.402 19.300 Atomic orbital electron populations 1.22355 0.92060 1.03950 1.05070 1.22985 0.96932 0.97902 0.80631 0.82941 1.86509 1.77705 1.15450 1.39215 1.18466 0.99306 0.83122 0.91448 1.17903 1.05837 0.92530 0.84953 1.20681 1.02114 0.90878 0.99586 1.20854 1.01199 1.00288 0.91221 1.21209 0.98038 0.91546 0.99177 1.19656 1.03972 0.94071 0.93209 1.17883 0.83140 0.82233 0.82961 1.90849 1.40086 1.35366 1.72646 1.48424 1.16059 1.49139 1.19540 1.21831 0.87096 0.93541 0.99288 1.22014 0.95884 0.99383 0.99812 1.21630 1.00447 0.99435 0.93301 1.18951 0.88927 0.92826 0.97084 0.95298 1.21029 1.07533 1.28178 0.99435 0.92458 1.25045 0.95305 0.96042 0.97539 1.69880 1.10526 1.34624 1.36518 0.86674 0.77551 0.78999 0.84868 1.20323 1.21267 1.20269 1.22322 1.04870 0.95687 0.77769 1.43680 1.66277 1.08116 1.12409 1.21564 0.76981 0.82013 0.90870 1.90790 1.49322 1.65057 1.33519 0.89922 0.88941 0.91635 0.84805 0.84530 0.84272 0.91942 0.90960 0.92245 0.92301 0.93069 0.93168 0.92561 0.85869 0.93844 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.30 37.16 0.35 -1.61 16 2 C 0.07 0.97 3.81 -27.85 -0.11 0.86 16 3 H 0.15 1.78 8.14 -51.93 -0.42 1.36 16 4 O -0.28 -4.54 9.40 -21.57 -0.20 -4.74 16 5 C 0.12 1.84 5.84 -38.57 -0.23 1.61 16 6 C 0.08 0.94 6.54 -83.51 -0.55 0.39 16 7 C -0.11 -0.94 9.94 -39.40 -0.39 -1.33 16 8 C -0.12 -0.97 10.02 -39.62 -0.40 -1.36 16 9 C -0.08 -0.90 7.77 -39.13 -0.30 -1.20 16 10 C -0.10 -1.60 4.61 -104.91 -0.48 -2.08 16 11 C 0.55 11.10 6.85 -12.47 -0.09 11.01 16 12 O -0.51 -12.86 16.18 2.51 0.04 -12.82 16 13 N -0.60 -11.60 2.97 -173.73 -0.52 -12.12 16 14 C 0.11 1.56 5.59 -3.49 -0.02 1.54 16 15 C -0.13 -2.05 6.10 -26.38 -0.16 -2.21 16 16 C -0.11 -2.12 5.10 -26.68 -0.14 -2.25 16 17 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -25.43 11.39 55.43 0.63 -24.80 16 23 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 28 N -0.66 -6.91 5.48 -9.68 -0.05 -6.97 16 29 C 0.50 6.36 7.19 -10.82 -0.08 6.28 16 30 O -0.51 -7.68 17.95 5.55 0.10 -7.58 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.14 1.38 7.74 -52.49 -0.41 0.97 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.90 5.37 -51.93 -0.28 0.62 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 3.44 5.11 -51.93 -0.27 3.18 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.41 3.27 8.89 -40.82 -0.36 2.91 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -34.09 372.90 -8.94 -43.03 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.33 Total: 3.81 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.20 Total: 0.52 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.06 Total: -43.89 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.09 -8.94 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.318 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds