Wall clock time and date at job start Wed Apr 1 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.44635 * 2 1 4 4 O 1.43001 * 109.41876 * 240.07254 * 2 1 3 5 5 C 1.35693 * 116.73428 * 286.36477 * 4 2 1 6 6 C 1.39408 * 119.54913 * 327.17266 * 5 4 2 7 7 C 1.38400 * 120.06878 * 179.90653 * 6 5 4 8 8 C 1.38576 * 120.15625 * 0.03541 * 7 6 5 9 9 C 1.37779 * 120.41916 * 359.96718 * 8 7 6 10 10 C 1.39780 * 120.71630 * 146.89854 * 5 4 2 11 11 C 1.47541 * 120.23628 * 0.31220 * 10 5 4 12 12 O 1.21584 * 119.99891 * 53.45348 * 11 10 5 13 13 N 1.34776 * 120.00247 * 233.45238 * 11 10 5 14 14 C 1.46930 * 120.62773 * 5.51099 * 13 11 10 15 15 C 1.53621 * 108.54115 * 126.36869 * 14 13 11 16 16 C 1.53047 * 109.24178 * 54.85971 * 15 14 13 17 17 C 1.53045 * 109.53448 * 298.50821 * 16 15 14 18 18 H 1.08997 * 109.49742 * 301.41512 * 17 16 15 19 19 C 1.50699 * 109.49634 * 181.31815 * 17 16 15 20 20 H 1.07997 * 119.99833 * 0.15981 * 19 17 16 21 21 C 1.37873 * 119.99949 * 180.16337 * 19 17 16 22 22 N 1.31511 * 120.00012 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00088 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46955 * 59.99743 * 23 21 19 25 25 H 1.48494 * 109.47352 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47216 * 300.00224 * 23 21 19 27 27 C 1.46922 * 120.63104 * 185.79658 * 13 11 10 28 28 N 1.40256 * 119.21769 * 359.93351 * 6 5 4 29 29 C 1.35086 * 118.96224 * 15.46260 * 28 6 5 30 30 O 1.21289 * 120.13831 * 181.69168 * 29 28 6 31 31 H 1.08997 * 109.47061 * 300.06461 * 1 2 3 32 32 H 1.08994 * 109.47213 * 60.06649 * 1 2 3 33 33 H 1.09003 * 109.47283 * 180.02562 * 1 2 3 34 34 H 1.07999 * 119.92084 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.79306 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.95180 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.58753 * 246.20395 * 14 13 11 38 38 H 1.08999 * 109.58347 * 6.62456 * 14 13 11 39 39 H 1.08996 * 109.63515 * 294.86538 * 15 14 13 40 40 H 1.09005 * 109.42764 * 174.72219 * 15 14 13 41 41 H 1.08998 * 109.46072 * 178.49318 * 16 15 14 42 42 H 1.08998 * 109.44988 * 58.52101 * 16 15 14 43 43 H 0.97008 * 119.99922 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.58859 * 353.36751 * 27 13 11 45 45 H 1.08998 * 109.58935 * 113.80166 * 27 13 11 46 46 H 0.97004 * 120.51704 * 195.48850 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6729 -1.1688 5 6 1.8864 -2.0244 -1.1860 6 6 1.9966 -2.7395 0.0056 7 6 1.8750 -4.1182 0.0008 8 6 1.6442 -4.7925 -1.1877 9 6 1.5331 -4.0990 -2.3730 10 6 1.6491 -2.7051 -2.3836 11 6 1.5314 -1.9594 -3.6513 12 8 2.4106 -1.1899 -3.9878 13 7 0.4494 -2.1312 -4.4362 14 6 -0.6757 -2.9635 -3.9885 15 6 -1.9665 -2.1373 -4.0932 16 6 -2.1092 -1.6032 -5.5204 17 6 -0.9253 -0.6896 -5.8456 18 1 -0.8928 0.1324 -5.1305 19 6 -1.0832 -0.1386 -7.2394 20 1 -1.9433 -0.4104 -7.8332 21 6 -0.1295 0.7124 -7.7564 22 7 0.9177 1.0437 -7.0331 23 14 -0.3249 1.3948 -9.4843 24 1 -1.5856 2.1750 -9.5687 25 1 0.8257 2.2786 -9.8005 26 1 -0.3706 0.2737 -10.4570 27 6 0.3751 -1.4949 -5.7584 28 7 2.2304 -2.0452 1.2016 29 6 2.0318 -0.7094 1.2320 30 8 2.2569 -0.0832 2.2461 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 -0.3634 -1.0277 0.0005 34 1 1.9603 -4.6698 0.9253 35 1 1.5506 -5.8685 -1.1847 36 1 1.3527 -4.6322 -3.2947 37 1 -0.7516 -3.8470 -4.6224 38 1 -0.5169 -3.2663 -2.9536 39 1 -1.9243 -1.3017 -3.3946 40 1 -2.8219 -2.7692 -3.8541 41 1 -3.0377 -1.0386 -5.6057 42 1 -2.1264 -2.4385 -6.2204 43 1 1.5884 1.6427 -7.3968 44 1 1.2272 -0.8284 -5.8916 45 1 0.3830 -2.2610 -6.5337 46 1 2.5304 -2.5169 1.9944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:00 Heat of formation + Delta-G solvation = -99.447881 kcal Electronic energy + Delta-G solvation = -31401.962979 eV Core-core repulsion = 27255.708110 eV Total energy + Delta-G solvation = -4146.254869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81236 -41.12333 -39.78688 -38.71028 -38.22887 -36.28358 -35.22226 -33.46859 -33.08587 -31.91624 -31.17882 -30.15893 -27.16807 -26.56241 -26.00071 -24.70527 -24.26968 -23.41617 -21.69040 -20.65493 -20.47016 -19.74500 -18.92487 -18.32358 -17.92270 -17.32476 -17.19807 -16.93817 -16.52140 -16.46286 -16.17450 -16.00723 -15.49161 -15.37091 -15.12765 -14.81636 -14.52377 -14.28238 -14.22423 -14.02064 -13.79736 -13.60758 -13.45598 -13.25688 -13.07040 -12.84918 -12.73030 -12.65425 -12.31377 -12.26296 -12.24117 -11.98903 -11.71247 -11.58513 -11.24537 -11.10778 -10.92808 -10.65719 -10.49571 -9.74639 -9.36251 -9.07596 -8.08437 -6.26550 -0.14821 0.00295 1.08212 1.41594 1.42911 1.51462 1.55944 1.77089 2.14130 2.21289 2.43596 2.62305 2.79650 3.19104 3.41078 3.62265 3.74587 3.79721 3.98701 4.10393 4.19623 4.22214 4.27724 4.34207 4.45714 4.52192 4.57701 4.62995 4.77135 4.83300 4.86608 4.91659 4.94415 5.08341 5.12389 5.28212 5.29786 5.33754 5.36816 5.41405 5.57039 5.62611 5.63794 5.68119 5.92547 6.02761 6.15999 6.34916 6.61852 6.67840 6.87016 7.32966 7.44245 8.94213 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003456 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.134369 B = 8099.521679 C = 8783.071165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 H 0.150 0.850 4 O -0.316 6.316 5 C 0.098 3.902 6 C 0.077 3.923 7 C -0.084 4.084 8 C -0.094 4.094 9 C -0.076 4.076 10 C -0.134 4.134 11 C 0.547 3.453 12 O -0.584 6.584 13 N -0.601 5.601 14 C 0.103 3.897 15 C -0.127 4.127 16 C -0.104 4.104 17 C 0.039 3.961 18 H -0.019 1.019 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.956 3.044 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.265 1.265 27 C 0.126 3.874 28 N -0.642 5.642 29 C 0.504 3.496 30 O -0.540 6.540 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.258 0.742 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -17.302 17.433 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 H 0.168 0.832 4 O -0.230 6.230 5 C 0.050 3.950 6 C -0.019 4.019 7 C -0.104 4.104 8 C -0.112 4.112 9 C -0.095 4.095 10 C -0.138 4.138 11 C 0.335 3.665 12 O -0.465 6.465 13 N -0.332 5.332 14 C -0.019 4.019 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.020 3.980 18 H -0.001 1.001 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.189 4.189 22 N -0.554 5.554 23 Si 0.782 3.218 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.190 1.190 27 C 0.004 3.996 28 N -0.290 5.290 29 C 0.291 3.709 30 O -0.416 6.416 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.198 0.802 35 H 0.203 0.797 36 H 0.171 0.829 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.589 -16.185 17.546 24.011 hybrid contribution 0.538 1.314 -0.858 1.659 sum -2.050 -14.871 16.688 22.446 Atomic orbital electron populations 1.22270 0.90798 1.04317 1.05051 1.23122 0.98056 0.97849 0.80328 0.83227 1.86458 1.78533 1.17225 1.40813 1.18756 1.00822 0.82582 0.92814 1.17996 1.06538 0.93592 0.83725 1.21271 0.98248 0.89282 1.01647 1.21366 0.98150 1.02303 0.89431 1.21462 0.97251 0.89449 1.01335 1.19355 1.08245 0.95561 0.90647 1.18721 0.82004 0.81459 0.84266 1.90794 1.42513 1.38648 1.74528 1.48420 1.17559 1.49156 1.18035 1.22201 0.84672 0.93310 1.01683 1.21991 0.98129 0.99743 0.96586 1.21511 0.97670 0.98676 0.96315 1.18884 0.91680 0.92613 0.94798 1.00117 1.21501 1.07350 1.27968 1.00657 0.91831 1.25900 0.94953 0.96596 1.01492 1.70111 1.11461 1.35421 1.38391 0.85636 0.77432 0.78506 0.80257 1.19363 1.21722 1.18951 1.21705 1.02524 0.94966 0.80386 1.43480 1.65412 1.07297 1.12843 1.21365 0.76726 0.82794 0.90043 1.90777 1.50832 1.65819 1.34212 0.88063 0.90670 0.90998 0.80234 0.79697 0.82901 0.89113 0.87810 0.93782 0.87582 0.93161 0.91970 0.93269 0.90898 0.93894 0.72716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.30 71.98 0.67 -3.15 16 2 C 0.07 1.79 3.81 29.87 0.11 1.90 16 3 H 0.15 3.94 8.14 -2.39 -0.02 3.92 16 4 O -0.32 -11.15 9.40 -87.46 -0.82 -11.97 16 5 C 0.10 2.87 5.84 22.93 0.13 3.00 16 6 C 0.08 1.51 6.54 38.11 0.25 1.76 16 7 C -0.08 -0.91 9.94 22.39 0.22 -0.69 16 8 C -0.09 -0.96 10.02 22.24 0.22 -0.74 16 9 C -0.08 -1.41 7.77 22.56 0.18 -1.24 16 10 C -0.13 -4.04 4.61 -20.05 -0.09 -4.13 16 11 C 0.55 23.21 6.85 86.70 0.59 23.81 16 12 O -0.58 -32.12 16.18 -1.32 -0.02 -32.14 16 13 N -0.60 -24.00 2.97 -821.82 -2.44 -26.43 16 14 C 0.10 2.79 5.59 86.51 0.48 3.27 16 15 C -0.13 -3.64 6.10 30.82 0.19 -3.45 16 16 C -0.10 -3.93 5.10 30.62 0.16 -3.77 16 17 C 0.04 2.00 2.25 -11.46 -0.03 1.98 16 18 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 19 C -0.54 -29.61 8.56 25.60 0.22 -29.40 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.57 5.30 84.65 0.45 1.02 16 22 N -0.92 -56.86 11.39 21.45 0.24 -56.61 16 23 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.13 6.33 5.41 86.37 0.47 6.79 16 28 N -0.64 -12.07 5.48 -302.73 -1.66 -13.73 16 29 C 0.50 12.70 7.19 87.63 0.63 13.33 16 30 O -0.54 -16.09 17.95 -3.06 -0.05 -16.14 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 34 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 35 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 36 H 0.15 2.40 7.74 -2.91 -0.02 2.38 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 2.21 5.37 -2.39 -0.01 2.20 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 44 H 0.07 4.45 5.11 -2.39 -0.01 4.44 16 45 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.43 5.35 8.89 -92.71 -0.82 4.53 16 Total: -1.00 -85.81 372.90 2.33 -83.48 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.20 Total: 16.63 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.86 Total: 10.30 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.85 Total: -96.78 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -0.90 Total: -60.25 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -85.81 2.33 -83.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.969 kcal (2) G-P(sol) polarization free energy of solvation -85.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds