Wall clock time and date at job start Wed Apr 1 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46886 * 2 1 4 4 C 1.50697 * 109.47198 * 240.00013 * 2 1 3 5 5 H 1.07999 * 119.99923 * 245.63100 * 4 2 1 6 6 C 1.37875 * 120.00052 * 65.62925 * 4 2 1 7 7 N 1.31519 * 119.99683 * 197.14751 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42657 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48508 * 109.46700 * 299.72571 * 8 6 4 11 11 H 1.48496 * 109.47230 * 59.72173 * 8 6 4 12 12 N 1.46904 * 109.47564 * 119.99317 * 2 1 3 13 13 C 1.46899 * 111.00192 * 275.00391 * 12 2 1 14 14 C 1.50703 * 109.46849 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00124 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99373 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99411 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46919 * 90.00289 * 17 16 14 19 19 C 1.38244 * 119.99706 * 269.72320 * 18 17 16 20 20 C 1.38233 * 119.99514 * 179.76852 * 19 18 17 21 21 C 1.38233 * 120.00456 * 0.50646 * 20 19 18 22 22 C 1.38240 * 119.99663 * 359.74575 * 21 20 19 23 23 C 1.38226 * 120.00127 * 89.99958 * 18 17 16 24 24 C 1.46494 * 120.00618 * 0.02562 * 16 14 13 25 25 C 1.53007 * 109.47102 * 89.99918 * 24 16 14 26 26 F 1.39898 * 109.47010 * 60.00157 * 25 24 16 27 27 F 1.39894 * 109.47137 * 180.02562 * 25 24 16 28 28 F 1.39902 * 109.46894 * 300.00270 * 25 24 16 29 29 H 1.09006 * 109.47198 * 306.36759 * 1 2 3 30 30 H 1.08992 * 109.47788 * 66.37126 * 1 2 3 31 31 H 1.08998 * 109.47105 * 186.37519 * 1 2 3 32 32 H 0.96999 * 119.99863 * 355.20567 * 7 6 4 33 33 H 1.00899 * 110.99677 * 151.04509 * 12 2 1 34 34 H 1.08998 * 109.47003 * 299.99755 * 13 12 2 35 35 H 1.09000 * 109.47188 * 59.99680 * 13 12 2 36 36 H 1.08996 * 109.47198 * 210.00257 * 17 16 14 37 37 H 1.09000 * 109.47479 * 330.00300 * 17 16 14 38 38 H 1.08003 * 119.99797 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99892 * 180.23443 * 20 19 18 40 40 H 1.08000 * 120.00348 * 179.72708 * 21 20 19 41 41 H 1.08001 * 120.00151 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00413 * 359.97438 * 23 18 17 43 43 H 1.08995 * 109.47677 * 209.99710 * 24 16 14 44 44 H 1.09000 * 109.47035 * 330.00384 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4794 7 7 1.9232 -0.9277 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9470 -4.0864 10 1 0.0387 1.8580 -1.9186 11 1 2.3771 2.4795 -2.0809 12 7 2.0198 -0.6923 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5875 -0.5216 3.5560 15 8 2.8671 -1.6986 3.4705 16 7 2.7284 0.1209 4.7325 17 6 3.2188 -0.6029 5.9081 18 6 4.7218 -0.5092 5.9647 19 6 5.4980 -1.4698 5.3434 20 6 6.8767 -1.3812 5.3913 21 6 7.4793 -0.3381 6.0692 22 6 6.7030 0.6195 6.6949 23 6 5.3243 0.5339 6.6426 24 6 2.3902 1.5425 4.8360 25 6 0.9175 1.6894 5.2243 26 9 0.6960 1.0664 6.4571 27 9 0.5943 3.0470 5.3225 28 9 0.1156 1.0891 4.2476 29 1 -0.3634 0.6094 0.8275 30 1 -0.3634 0.4118 -0.9414 31 1 -0.3633 -1.0213 0.1141 32 1 2.2478 -1.8381 -3.4691 33 1 2.9174 -1.1203 1.0287 34 1 2.7588 1.0464 2.1181 35 1 1.0871 0.6165 2.5525 36 1 2.7931 -0.1624 6.8096 37 1 2.9223 -1.6495 5.8402 38 1 5.0272 -2.2870 4.8172 39 1 7.4831 -2.1295 4.9028 40 1 8.5564 -0.2714 6.1104 41 1 7.1737 1.4344 7.2249 42 1 4.7179 1.2821 7.1314 43 1 3.0149 2.0102 5.5968 44 1 2.5627 2.0279 3.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:04 Heat of formation + Delta-G solvation = -154.474328 kcal Electronic energy + Delta-G solvation = -31138.468169 eV Core-core repulsion = 26447.970435 eV Total energy + Delta-G solvation = -4690.497735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.34016 -47.85923 -47.82518 -40.34995 -39.04529 -36.29151 -35.71235 -32.80355 -32.24321 -31.10671 -29.86511 -29.47668 -27.12906 -25.23000 -24.20649 -23.81410 -22.73201 -21.64735 -19.86895 -19.60208 -18.78905 -18.71109 -18.12520 -17.53995 -17.07914 -16.60670 -16.31364 -15.68944 -15.36632 -15.17259 -14.73863 -14.68269 -14.40565 -14.24026 -14.18619 -13.96753 -13.92944 -13.76447 -13.62150 -13.45616 -13.12271 -13.03220 -12.75783 -12.62767 -12.47148 -12.18249 -11.84657 -11.78765 -11.49125 -11.31578 -11.16702 -11.00445 -10.42548 -10.01040 -9.84124 -9.69135 -9.21828 -9.12824 -8.98339 -8.90616 -8.25196 -7.59159 -6.48229 -4.09155 1.02323 1.19879 2.25045 2.53459 2.74306 3.36384 3.38031 3.51977 3.57439 3.60953 3.66466 3.92273 4.36200 4.45895 4.49519 4.55723 4.64566 4.78116 4.79143 4.91784 5.04513 5.08402 5.25145 5.25419 5.41454 5.46016 5.60479 5.68828 5.75687 5.84522 6.01699 6.21734 6.32098 6.38045 6.39466 6.66482 6.73913 6.78198 6.86078 6.97680 7.44930 7.67242 8.05861 8.08824 8.37833 8.43397 8.94004 9.60019 10.92252 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.003638 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.161545 B = 7693.875685 C = 9430.214438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.191 3.809 3 H -0.006 1.006 4 C -0.605 4.605 5 H 0.062 0.938 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 1.046 2.954 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.661 5.661 13 C 0.028 3.972 14 C 0.521 3.479 15 O -0.498 6.498 16 N -0.615 5.615 17 C 0.151 3.849 18 C -0.108 4.108 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.110 4.110 24 C 0.070 3.930 25 C 0.431 3.569 26 F -0.182 7.182 27 F -0.181 7.181 28 F -0.172 7.172 29 H 0.017 0.983 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.269 0.731 33 H 0.346 0.654 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 7.942 24.645 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.082 3.918 3 H 0.011 0.989 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.875 3.125 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.294 5.294 13 C -0.105 4.105 14 C 0.310 3.690 15 O -0.370 6.370 16 N -0.350 5.350 17 C 0.030 3.970 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.128 4.128 24 C -0.057 4.057 25 C 0.374 3.626 26 F -0.164 7.164 27 F -0.162 7.162 28 F -0.154 7.154 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.864 8.128 23.606 25.436 hybrid contribution 1.022 -0.464 1.050 1.537 sum 5.886 7.664 24.656 26.482 Atomic orbital electron populations 1.22147 0.98106 1.00570 0.98858 1.19463 0.92303 0.92215 0.87816 0.98899 1.22066 1.40872 1.10338 0.91046 0.92017 1.25721 0.94613 1.05016 0.91992 1.70844 1.41473 1.10017 1.31416 0.84023 0.77082 0.75268 0.76149 1.21037 1.19899 1.21207 1.60378 1.33870 1.31053 1.04094 1.22215 1.02082 0.95176 0.91042 1.21179 0.76383 0.87809 0.83584 1.90684 1.47421 1.15418 1.83466 1.47993 1.67062 1.08627 1.11284 1.20479 0.89567 0.99511 0.87487 1.20190 0.95742 0.95913 0.99112 1.21297 0.93694 0.98766 0.97276 1.21231 0.94923 0.98533 0.99251 1.21200 0.99864 0.94809 0.97622 1.21107 0.93809 0.99193 1.00244 1.21021 0.94896 0.97569 0.99361 1.22742 0.89300 0.85926 1.07736 1.21434 0.92232 0.73747 0.75148 1.93175 1.95937 1.82704 1.44541 1.93202 1.94141 1.32856 1.96010 1.93203 1.76648 1.83499 1.62013 0.96353 0.92771 0.92922 0.92107 0.83484 0.93258 0.87619 0.89239 0.88242 0.85162 0.85953 0.86175 0.86118 0.86294 0.85740 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 37.16 0.34 -2.82 16 2 C 0.19 4.54 2.18 -68.87 -0.15 4.39 16 3 H -0.01 -0.15 6.45 -51.93 -0.34 -0.48 16 4 C -0.61 -17.02 8.83 -34.44 -0.30 -17.33 16 5 H 0.06 1.89 7.92 -52.49 -0.42 1.47 16 6 C 0.03 0.93 5.29 -17.82 -0.09 0.83 16 7 N -0.90 -27.72 13.70 55.43 0.76 -26.96 16 8 Si 1.05 24.83 26.29 -169.99 -4.47 20.36 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -5.98 5.76 56.52 0.33 -5.66 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.66 -14.20 5.93 -109.22 -0.65 -14.85 16 13 C 0.03 0.46 4.45 -4.97 -0.02 0.44 16 14 C 0.52 8.02 7.38 -10.98 -0.08 7.94 16 15 O -0.50 -9.28 15.33 5.56 0.09 -9.19 16 16 N -0.61 -6.85 2.37 -175.06 -0.42 -7.27 16 17 C 0.15 1.50 5.33 -5.19 -0.03 1.47 16 18 C -0.11 -1.10 5.46 -104.62 -0.57 -1.67 16 19 C -0.09 -1.05 9.70 -39.58 -0.38 -1.44 16 20 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.11 -0.92 9.70 -39.59 -0.38 -1.31 16 24 C 0.07 0.57 5.33 -4.04 -0.02 0.55 16 25 C 0.43 4.18 3.29 37.16 0.12 4.30 16 26 F -0.18 -1.82 16.22 2.25 0.04 -1.78 16 27 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 28 F -0.17 -2.18 14.29 2.25 0.03 -2.15 16 29 H 0.02 0.35 7.62 -51.93 -0.40 -0.04 16 30 H 0.05 1.26 4.88 -51.93 -0.25 1.01 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 33 H 0.35 7.78 7.96 -39.29 -0.31 7.46 16 34 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 35 H 0.11 1.69 4.90 -51.93 -0.25 1.44 16 36 H 0.09 0.68 7.19 -51.93 -0.37 0.31 16 37 H 0.10 1.14 7.36 -51.93 -0.38 0.75 16 38 H 0.13 1.67 7.60 -52.48 -0.40 1.27 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.62 8.07 -51.93 -0.42 0.20 16 44 H 0.13 0.93 6.44 -51.93 -0.33 0.60 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -33.05 370.38 -7.37 -40.42 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.60 Total: 6.64 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.78 Total: -9.14 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.30 Total: -49.08 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.11 Total: -5.60 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.47 Total: 20.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.05 -7.37 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.059 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds