Wall clock time and date at job start Wed Apr 1 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46886 * 2 1 4 4 C 1.50697 * 109.47198 * 240.00013 * 2 1 3 5 5 H 1.07999 * 119.99923 * 245.63100 * 4 2 1 6 6 C 1.37875 * 120.00052 * 65.62925 * 4 2 1 7 7 N 1.31519 * 119.99683 * 197.14751 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42657 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48508 * 109.46700 * 299.72571 * 8 6 4 11 11 H 1.48496 * 109.47230 * 59.72173 * 8 6 4 12 12 N 1.46904 * 109.47564 * 119.99317 * 2 1 3 13 13 C 1.46899 * 111.00192 * 275.00391 * 12 2 1 14 14 C 1.50703 * 109.46849 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00124 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99373 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99411 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46919 * 90.00289 * 17 16 14 19 19 C 1.38244 * 119.99706 * 269.72320 * 18 17 16 20 20 C 1.38233 * 119.99514 * 179.76852 * 19 18 17 21 21 C 1.38233 * 120.00456 * 0.50646 * 20 19 18 22 22 C 1.38240 * 119.99663 * 359.74575 * 21 20 19 23 23 C 1.38226 * 120.00127 * 89.99958 * 18 17 16 24 24 C 1.46494 * 120.00618 * 0.02562 * 16 14 13 25 25 C 1.53007 * 109.47102 * 89.99918 * 24 16 14 26 26 F 1.39898 * 109.47010 * 60.00157 * 25 24 16 27 27 F 1.39894 * 109.47137 * 180.02562 * 25 24 16 28 28 F 1.39902 * 109.46894 * 300.00270 * 25 24 16 29 29 H 1.09006 * 109.47198 * 306.36759 * 1 2 3 30 30 H 1.08992 * 109.47788 * 66.37126 * 1 2 3 31 31 H 1.08998 * 109.47105 * 186.37519 * 1 2 3 32 32 H 0.96999 * 119.99863 * 355.20567 * 7 6 4 33 33 H 1.00899 * 110.99677 * 151.04509 * 12 2 1 34 34 H 1.08998 * 109.47003 * 299.99755 * 13 12 2 35 35 H 1.09000 * 109.47188 * 59.99680 * 13 12 2 36 36 H 1.08996 * 109.47198 * 210.00257 * 17 16 14 37 37 H 1.09000 * 109.47479 * 330.00300 * 17 16 14 38 38 H 1.08003 * 119.99797 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99892 * 180.23443 * 20 19 18 40 40 H 1.08000 * 120.00348 * 179.72708 * 21 20 19 41 41 H 1.08001 * 120.00151 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00413 * 359.97438 * 23 18 17 43 43 H 1.08995 * 109.47677 * 209.99710 * 24 16 14 44 44 H 1.09000 * 109.47035 * 330.00384 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4794 7 7 1.9232 -0.9277 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9470 -4.0864 10 1 0.0387 1.8580 -1.9186 11 1 2.3771 2.4795 -2.0809 12 7 2.0198 -0.6923 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5875 -0.5216 3.5560 15 8 2.8671 -1.6986 3.4705 16 7 2.7284 0.1209 4.7325 17 6 3.2188 -0.6029 5.9081 18 6 4.7218 -0.5092 5.9647 19 6 5.4980 -1.4698 5.3434 20 6 6.8767 -1.3812 5.3913 21 6 7.4793 -0.3381 6.0692 22 6 6.7030 0.6195 6.6949 23 6 5.3243 0.5339 6.6426 24 6 2.3902 1.5425 4.8360 25 6 0.9175 1.6894 5.2243 26 9 0.6960 1.0664 6.4571 27 9 0.5943 3.0470 5.3225 28 9 0.1156 1.0891 4.2476 29 1 -0.3634 0.6094 0.8275 30 1 -0.3634 0.4118 -0.9414 31 1 -0.3633 -1.0213 0.1141 32 1 2.2478 -1.8381 -3.4691 33 1 2.9174 -1.1203 1.0287 34 1 2.7588 1.0464 2.1181 35 1 1.0871 0.6165 2.5525 36 1 2.7931 -0.1624 6.8096 37 1 2.9223 -1.6495 5.8402 38 1 5.0272 -2.2870 4.8172 39 1 7.4831 -2.1295 4.9028 40 1 8.5564 -0.2714 6.1104 41 1 7.1737 1.4344 7.2249 42 1 4.7179 1.2821 7.1314 43 1 3.0149 2.0102 5.5968 44 1 2.5627 2.0279 3.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:03 Heat of formation + Delta-G solvation = -176.098025 kcal Electronic energy + Delta-G solvation = -31139.405843 eV Core-core repulsion = 26447.970435 eV Total energy + Delta-G solvation = -4691.435409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.10973 -48.65268 -48.58867 -41.36256 -39.88367 -37.73970 -37.01548 -34.63772 -33.26334 -31.79768 -31.55125 -30.26153 -28.32889 -26.88878 -25.70943 -24.66090 -23.42826 -22.46166 -21.60021 -20.72741 -19.81373 -19.57021 -19.42871 -18.83085 -18.11443 -17.40007 -17.32172 -16.93471 -16.30934 -16.08150 -15.90547 -15.69284 -15.49223 -15.39279 -15.09303 -15.01579 -14.92771 -14.79008 -14.73439 -14.34484 -14.26938 -14.04729 -13.95023 -13.72171 -13.50098 -13.44842 -13.16752 -13.04151 -12.91834 -12.83119 -12.27504 -12.19178 -11.88411 -11.86941 -11.56159 -11.05135 -10.99718 -10.41948 -10.15243 -9.83206 -9.73235 -9.26109 -8.76199 -6.39446 0.30208 0.49049 1.29495 1.47296 1.54636 1.60058 1.73896 1.86285 2.50208 2.79835 2.90105 2.96891 3.04319 3.05755 3.43170 3.54500 3.79209 3.87659 3.91740 4.13616 4.15509 4.26339 4.28953 4.33257 4.38088 4.55563 4.57583 4.68165 4.74463 4.84393 4.90253 5.04696 5.07691 5.13668 5.18195 5.54228 5.57424 5.61656 5.63598 5.73078 5.95233 5.99973 6.09955 6.22116 6.57212 6.68824 6.97879 7.40631 8.61615 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.003638 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.161545 B = 7693.875685 C = 9430.214438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.194 3.806 3 H 0.011 0.989 4 C -0.611 4.611 5 H 0.016 0.984 6 C -0.020 4.020 7 N -0.937 5.937 8 Si 1.086 2.914 9 H -0.290 1.290 10 H -0.239 1.239 11 H -0.259 1.259 12 N -0.678 5.678 13 C 0.026 3.974 14 C 0.522 3.478 15 O -0.544 6.544 16 N -0.604 5.604 17 C 0.153 3.847 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.104 4.104 24 C 0.066 3.934 25 C 0.432 3.568 26 F -0.184 7.184 27 F -0.176 7.176 28 F -0.193 7.193 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.250 0.750 33 H 0.334 0.666 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 12.199 27.533 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.085 3.915 3 H 0.028 0.972 4 C -0.649 4.649 5 H 0.034 0.966 6 C -0.218 4.218 7 N -0.572 5.572 8 Si 0.906 3.094 9 H -0.216 1.216 10 H -0.163 1.163 11 H -0.184 1.184 12 N -0.309 5.309 13 C -0.106 4.106 14 C 0.311 3.689 15 O -0.419 6.419 16 N -0.337 5.337 17 C 0.032 3.968 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.157 4.157 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.059 4.059 25 C 0.376 3.624 26 F -0.166 7.166 27 F -0.158 7.158 28 F -0.174 7.174 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.880 12.403 26.565 29.721 hybrid contribution 1.084 -1.849 0.267 2.160 sum 5.964 10.554 26.832 29.444 Atomic orbital electron populations 1.22053 0.96986 1.00171 1.00030 1.19330 0.93030 0.92323 0.86852 0.97182 1.22299 1.40061 1.08877 0.93629 0.96598 1.27327 0.94015 1.08880 0.91536 1.70989 1.44057 1.09501 1.32676 0.83580 0.79176 0.70100 0.76540 1.21621 1.16268 1.18371 1.60256 1.33389 1.32548 1.04746 1.22301 1.03550 0.94971 0.89761 1.20983 0.76107 0.87187 0.84601 1.90682 1.49551 1.17291 1.84358 1.47854 1.65688 1.10018 1.10136 1.20556 0.89904 0.98513 0.87795 1.20204 0.95451 0.96386 0.99692 1.21240 0.94615 0.99173 0.98742 1.21364 0.94553 0.99605 1.00183 1.21502 1.01154 0.94302 0.96979 1.21520 0.93886 0.99389 0.99419 1.21365 0.95431 0.97181 0.98238 1.23135 0.88786 0.83893 1.10121 1.21610 0.92500 0.73661 0.74658 1.93174 1.95997 1.82793 1.44605 1.93214 1.94162 1.32440 1.95953 1.93160 1.77403 1.83945 1.62919 0.92832 0.93198 0.94794 0.94092 0.84825 0.90666 0.86463 0.86091 0.90715 0.88131 0.85925 0.84213 0.83149 0.82846 0.81521 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 9.05 71.98 0.65 -5.22 16 2 C 0.19 9.06 2.18 44.17 0.10 9.16 16 3 H 0.01 0.47 6.45 -2.39 -0.02 0.45 16 4 C -0.61 -35.32 8.83 25.60 0.23 -35.09 16 5 H 0.02 1.03 7.92 -2.91 -0.02 1.00 16 6 C -0.02 -1.13 5.29 84.65 0.45 -0.68 16 7 N -0.94 -59.47 13.70 21.45 0.29 -59.18 16 8 Si 1.09 48.44 26.29 68.60 1.80 50.24 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.24 -9.32 5.76 99.48 0.57 -8.75 16 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 12 N -0.68 -29.22 5.93 -499.46 -2.96 -32.18 16 13 C 0.03 0.82 4.45 85.56 0.38 1.20 16 14 C 0.52 15.77 7.38 87.66 0.65 16.42 16 15 O -0.54 -21.12 15.33 -3.03 -0.05 -21.17 16 16 N -0.60 -12.17 2.37 -826.15 -1.96 -14.13 16 17 C 0.15 2.80 5.33 85.63 0.46 3.26 16 18 C -0.12 -2.17 5.46 -19.87 -0.11 -2.28 16 19 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 20 C -0.14 -2.87 10.05 22.27 0.22 -2.64 16 21 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 22 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 23 C -0.10 -1.33 9.70 22.27 0.22 -1.12 16 24 C 0.07 0.79 5.33 86.38 0.46 1.25 16 25 C 0.43 6.87 3.29 71.98 0.24 7.11 16 26 F -0.18 -3.08 16.22 44.97 0.73 -2.35 16 27 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 28 F -0.19 -4.38 14.29 44.97 0.64 -3.73 16 29 H 0.05 1.94 7.62 -2.38 -0.02 1.92 16 30 H 0.05 2.20 4.88 -2.39 -0.01 2.18 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 33 H 0.33 15.64 7.96 -89.69 -0.71 14.92 16 34 H 0.08 2.00 7.31 -2.39 -0.02 1.98 16 35 H 0.12 3.43 4.90 -2.39 -0.01 3.42 16 36 H 0.12 1.43 7.19 -2.39 -0.02 1.41 16 37 H 0.07 1.76 7.36 -2.39 -0.02 1.74 16 38 H 0.10 2.91 7.60 -2.91 -0.02 2.89 16 39 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.17 0.64 8.07 -2.39 -0.02 0.62 16 44 H 0.14 1.40 6.44 -2.39 -0.02 1.38 16 Total: -1.00 -76.93 370.38 4.04 -72.89 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.16 Total: 25.78 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.60 Total: -14.29 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.63 Total: -105.49 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 2.15 Total: -7.97 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.80 Total: 50.24 kcal Total: -76.93 4.04 -72.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.210 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds