Wall clock time and date at job start Wed Apr 1 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46852 * 89.99859 * 17 16 14 19 19 C 1.38236 * 120.00150 * 269.72472 * 18 17 16 20 20 C 1.38236 * 120.00120 * 179.76860 * 19 18 17 21 21 C 1.38234 * 119.99540 * 0.51089 * 20 19 18 22 22 C 1.38232 * 120.00395 * 359.74316 * 21 20 19 23 23 C 1.38233 * 119.99880 * 0.02562 * 22 21 20 24 24 C 1.46506 * 119.99776 * 359.97438 * 16 14 13 25 25 C 1.52998 * 109.46953 * 90.00007 * 24 16 14 26 26 F 1.39892 * 109.46988 * 60.00110 * 25 24 16 27 27 F 1.39902 * 109.47273 * 180.02562 * 25 24 16 28 28 F 1.39896 * 109.47138 * 300.00094 * 25 24 16 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 34 34 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 35 35 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 36 36 H 1.08999 * 109.46886 * 209.99446 * 17 16 14 37 37 H 1.09000 * 109.47114 * 329.99875 * 17 16 14 38 38 H 1.07995 * 119.99676 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.00108 * 180.23047 * 20 19 18 40 40 H 1.08002 * 119.99635 * 179.72769 * 21 20 19 41 41 H 1.08002 * 120.00240 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.00209 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47233 * 210.00415 * 24 16 14 44 44 H 1.09008 * 109.46787 * 330.00299 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 2.0550 -1.1929 -6.6576 19 6 1.6109 -2.4662 -6.3535 20 6 0.5383 -3.0061 -7.0382 21 6 -0.0836 -2.2767 -8.0343 22 6 0.3638 -1.0055 -8.3421 23 6 1.4334 -0.4638 -7.6541 24 6 2.3904 1.5427 -4.8358 25 6 3.6268 2.3863 -4.5190 26 9 4.6447 2.0822 -5.4292 27 9 3.3029 3.7438 -4.6174 28 9 4.0633 2.1045 -3.2201 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7089 1.1611 3.4845 33 1 2.9172 -1.1204 -1.0288 34 1 1.0871 0.6165 -2.5525 35 1 2.7588 1.0464 -2.1181 36 1 3.7606 0.0858 -6.5582 37 1 3.8903 -1.4013 -5.5887 38 1 2.0999 -3.0378 -5.5786 39 1 0.1890 -3.9994 -6.7980 40 1 -0.9188 -2.7003 -8.5723 41 1 -0.1218 -0.4359 -9.1206 42 1 1.7832 0.5293 -7.8947 43 1 2.0503 1.7622 -5.8479 44 1 1.5973 1.7796 -4.1265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:12 Heat of formation + Delta-G solvation = -154.982008 kcal Electronic energy + Delta-G solvation = -31021.207255 eV Core-core repulsion = 26330.687505 eV Total energy + Delta-G solvation = -4690.519750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.26358 -47.78323 -47.74857 -40.26056 -38.96885 -36.15667 -35.52909 -32.76650 -32.16337 -31.04748 -29.42952 -29.23203 -26.89593 -25.35267 -24.40608 -23.77368 -22.67241 -21.59581 -19.97420 -19.51190 -18.71244 -18.64647 -17.94316 -17.22076 -16.75388 -16.47156 -15.95942 -15.53869 -15.19718 -15.02428 -14.73662 -14.59910 -14.52505 -14.19512 -14.16292 -13.87775 -13.86673 -13.57740 -13.54846 -13.21701 -13.09153 -12.98272 -12.68289 -12.54292 -12.37974 -12.10031 -11.77845 -11.42997 -11.27065 -11.12492 -10.91000 -10.76510 -10.38944 -10.15834 -10.07511 -9.68326 -9.15143 -9.06714 -8.92417 -8.84950 -8.47386 -7.32203 -6.03514 -4.09414 1.08523 1.25988 2.34283 2.61541 2.84092 3.33054 3.36683 3.40593 3.60275 3.67468 3.74808 4.00920 4.39429 4.47017 4.56631 4.63625 4.72422 4.83986 4.87238 4.98151 5.11386 5.26439 5.30737 5.37317 5.47675 5.52098 5.73607 5.81493 5.89190 5.90655 6.10507 6.27371 6.37863 6.45009 6.80060 6.84151 7.01906 7.08392 7.18408 7.43585 7.77635 7.85211 8.19112 8.24249 8.33287 8.62038 8.99797 9.56423 11.03020 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003289 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.563625 B = 8510.590304 C =10112.755051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.671 5.671 13 C 0.031 3.969 14 C 0.521 3.479 15 O -0.501 6.501 16 N -0.615 5.615 17 C 0.151 3.849 18 C -0.108 4.108 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.110 4.110 24 C 0.071 3.929 25 C 0.431 3.569 26 F -0.183 7.183 27 F -0.181 7.181 28 F -0.173 7.173 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.002 0.998 32 H 0.262 0.738 33 H 0.341 0.659 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 2.557 -23.416 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.304 5.304 13 C -0.101 4.101 14 C 0.311 3.689 15 O -0.373 6.373 16 N -0.350 5.350 17 C 0.030 3.970 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.056 4.056 25 C 0.374 3.626 26 F -0.165 7.165 27 F -0.162 7.162 28 F -0.154 7.154 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.021 0.979 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.725 1.757 -23.326 23.403 hybrid contribution 1.118 0.443 1.034 1.585 sum 1.842 2.200 -22.292 22.476 Atomic orbital electron populations 1.21735 0.97755 0.99538 0.99283 1.19151 0.92671 0.92347 0.85245 0.97953 1.21204 1.31591 1.12630 0.90278 0.92084 1.24903 0.94998 0.94983 0.99031 1.69881 1.36598 1.22851 1.23624 0.86554 0.79118 0.79808 0.81899 1.21312 1.20137 1.20289 1.60540 1.33404 1.31578 1.04848 1.22112 1.01305 0.95809 0.90900 1.21289 0.76395 0.87815 0.83448 1.90669 1.47415 1.15506 1.83680 1.48004 1.68337 1.07838 1.10819 1.20467 0.93550 0.97343 0.85680 1.20192 0.98614 0.95022 0.97080 1.21290 0.96101 0.95056 0.98402 1.21223 0.96229 1.00216 0.96281 1.21187 0.99723 0.94879 0.97759 1.21093 0.97236 0.95884 1.00184 1.21018 0.96314 0.99367 0.96153 1.22726 0.93348 0.81822 1.07701 1.21444 0.86845 0.79323 0.74941 1.93168 1.63293 1.92842 1.67173 1.93203 1.92551 1.34553 1.95903 1.93208 1.90998 1.93143 1.38048 0.94782 0.89926 0.97901 0.92846 0.84041 0.88987 0.91911 0.89326 0.88331 0.85149 0.85989 0.86232 0.86166 0.86327 0.85834 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.19 37.16 0.34 -2.73 16 2 C 0.21 5.37 2.60 -68.87 -0.18 5.19 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 5 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.67 -14.76 5.93 -109.22 -0.65 -15.41 16 13 C 0.03 0.55 4.45 -4.97 -0.02 0.53 16 14 C 0.52 8.27 7.38 -10.99 -0.08 8.19 16 15 O -0.50 -9.45 15.34 5.55 0.09 -9.37 16 16 N -0.61 -7.17 2.37 -175.05 -0.42 -7.58 16 17 C 0.15 1.56 5.33 -5.19 -0.03 1.53 16 18 C -0.11 -1.13 5.46 -104.62 -0.57 -1.71 16 19 C -0.09 -1.07 9.70 -39.58 -0.38 -1.45 16 20 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 22 C -0.13 -1.08 10.05 -39.59 -0.40 -1.47 16 23 C -0.11 -0.96 9.70 -39.58 -0.38 -1.35 16 24 C 0.07 0.62 5.33 -4.04 -0.02 0.60 16 25 C 0.43 4.49 3.29 37.16 0.12 4.62 16 26 F -0.18 -1.93 16.23 2.25 0.04 -1.89 16 27 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 28 F -0.17 -2.34 14.29 2.25 0.03 -2.30 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 31 H 0.00 0.04 7.45 -51.93 -0.39 -0.34 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.34 7.74 7.92 -39.30 -0.31 7.43 16 34 H 0.09 1.49 6.70 -51.93 -0.35 1.15 16 35 H 0.06 1.08 5.39 -51.93 -0.28 0.80 16 36 H 0.09 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.10 1.15 7.36 -51.93 -0.38 0.77 16 38 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.13 1.05 6.44 -51.92 -0.33 0.72 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -31.61 374.44 -8.02 -39.62 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.60 Total: 5.54 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.79 Total: -4.20 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.44 Total: -47.64 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.61 -8.02 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.357 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds