Wall clock time and date at job start Wed Apr 1 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46852 * 89.99859 * 17 16 14 19 19 C 1.38236 * 120.00150 * 269.72472 * 18 17 16 20 20 C 1.38236 * 120.00120 * 179.76860 * 19 18 17 21 21 C 1.38234 * 119.99540 * 0.51089 * 20 19 18 22 22 C 1.38232 * 120.00395 * 359.74316 * 21 20 19 23 23 C 1.38233 * 119.99880 * 0.02562 * 22 21 20 24 24 C 1.46506 * 119.99776 * 359.97438 * 16 14 13 25 25 C 1.52998 * 109.46953 * 90.00007 * 24 16 14 26 26 F 1.39892 * 109.46988 * 60.00110 * 25 24 16 27 27 F 1.39902 * 109.47273 * 180.02562 * 25 24 16 28 28 F 1.39896 * 109.47138 * 300.00094 * 25 24 16 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 34 34 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 35 35 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 36 36 H 1.08999 * 109.46886 * 209.99446 * 17 16 14 37 37 H 1.09000 * 109.47114 * 329.99875 * 17 16 14 38 38 H 1.07995 * 119.99676 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.00108 * 180.23047 * 20 19 18 40 40 H 1.08002 * 119.99635 * 179.72769 * 21 20 19 41 41 H 1.08002 * 120.00240 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.00209 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47233 * 210.00415 * 24 16 14 44 44 H 1.09008 * 109.46787 * 330.00299 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 2.0550 -1.1929 -6.6576 19 6 1.6109 -2.4662 -6.3535 20 6 0.5383 -3.0061 -7.0382 21 6 -0.0836 -2.2767 -8.0343 22 6 0.3638 -1.0055 -8.3421 23 6 1.4334 -0.4638 -7.6541 24 6 2.3904 1.5427 -4.8358 25 6 3.6268 2.3863 -4.5190 26 9 4.6447 2.0822 -5.4292 27 9 3.3029 3.7438 -4.6174 28 9 4.0633 2.1045 -3.2201 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7089 1.1611 3.4845 33 1 2.9172 -1.1204 -1.0288 34 1 1.0871 0.6165 -2.5525 35 1 2.7588 1.0464 -2.1181 36 1 3.7606 0.0858 -6.5582 37 1 3.8903 -1.4013 -5.5887 38 1 2.0999 -3.0378 -5.5786 39 1 0.1890 -3.9994 -6.7980 40 1 -0.9188 -2.7003 -8.5723 41 1 -0.1218 -0.4359 -9.1206 42 1 1.7832 0.5293 -7.8947 43 1 2.0503 1.7622 -5.8479 44 1 1.5973 1.7796 -4.1265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:11 Heat of formation + Delta-G solvation = -173.598808 kcal Electronic energy + Delta-G solvation = -31022.014540 eV Core-core repulsion = 26330.687505 eV Total energy + Delta-G solvation = -4691.327035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.12867 -48.67594 -48.60439 -41.32215 -39.84154 -37.59913 -36.96536 -34.53480 -33.18450 -31.76122 -31.02308 -30.24156 -28.19192 -27.27366 -25.77805 -24.66780 -23.39455 -22.46466 -21.75650 -20.67776 -19.58787 -19.57314 -19.02936 -18.50049 -18.03012 -17.42022 -17.30209 -16.71358 -16.43652 -16.13243 -15.85666 -15.62487 -15.53600 -15.43764 -15.21366 -15.03592 -14.81448 -14.75828 -14.52738 -14.33228 -14.26068 -14.12502 -13.75938 -13.47811 -13.42156 -13.28697 -13.10968 -12.91505 -12.81855 -12.68105 -12.31448 -12.19655 -12.15695 -12.01768 -11.83076 -11.04416 -10.87721 -10.56868 -10.13491 -9.79365 -9.69150 -9.10076 -8.14631 -6.27784 0.33741 0.52933 1.32323 1.42058 1.43750 1.51366 1.61921 1.86964 2.41373 2.79439 2.93131 2.96671 3.07143 3.14094 3.47598 3.66774 3.82323 3.88818 3.94977 4.16611 4.19374 4.30091 4.32210 4.37827 4.47207 4.58768 4.70912 4.77775 4.82560 5.06550 5.11018 5.15294 5.18282 5.20898 5.43741 5.57675 5.63650 5.65197 5.68233 5.82674 5.98376 6.13553 6.21469 6.39769 6.68596 6.90596 7.02188 7.41902 8.90803 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003289 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.563625 B = 8510.590304 C =10112.755051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.219 3.781 3 H -0.019 1.019 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.031 3.969 14 C 0.525 3.475 15 O -0.540 6.540 16 N -0.604 5.604 17 C 0.153 3.847 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.138 4.138 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.105 4.105 24 C 0.068 3.932 25 C 0.431 3.569 26 F -0.183 7.183 27 F -0.178 7.178 28 F -0.195 7.195 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.333 0.667 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 3.877 -25.554 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.111 3.889 3 H -0.002 1.002 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.198 1.198 12 N -0.309 5.309 13 C -0.101 4.101 14 C 0.314 3.686 15 O -0.415 6.415 16 N -0.337 5.337 17 C 0.032 3.968 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.156 4.156 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.123 4.123 24 C -0.057 4.057 25 C 0.375 3.625 26 F -0.164 7.164 27 F -0.159 7.159 28 F -0.177 7.177 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.186 0.814 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.123 3.109 -25.508 25.697 hybrid contribution 1.305 0.086 1.580 2.051 sum 1.429 3.195 -23.928 24.183 Atomic orbital electron populations 1.21554 0.97280 0.98814 0.99513 1.18955 0.92962 0.91025 0.86003 1.00159 1.21526 1.32005 1.12788 0.91828 0.92889 1.25648 0.95099 0.95662 1.01730 1.69985 1.37129 1.23739 1.24331 0.85590 0.78693 0.78671 0.78536 1.20498 1.19924 1.19796 1.60424 1.33015 1.32458 1.04988 1.22161 1.02527 0.95286 0.90143 1.20932 0.76236 0.87175 0.84279 1.90664 1.49329 1.17058 1.84468 1.47853 1.67025 1.09036 1.09799 1.20568 0.93552 0.97419 0.85227 1.20204 0.98911 0.94694 0.98006 1.21241 0.97291 0.96166 0.98858 1.21370 0.96332 1.00844 0.97072 1.21498 1.00014 0.95294 0.97115 1.21504 0.96862 0.95614 1.00319 1.21356 0.95736 1.00422 0.94827 1.23087 0.92596 0.79388 1.10656 1.21650 0.87208 0.79659 0.73970 1.93170 1.63493 1.92842 1.66920 1.93210 1.92492 1.34402 1.95803 1.93165 1.91332 1.93333 1.39871 0.95812 0.92071 0.95203 0.92670 0.84914 0.87489 0.91339 0.86215 0.90487 0.87986 0.85758 0.84168 0.83235 0.83036 0.81443 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.60 9.19 71.98 0.66 -4.94 16 2 C 0.22 11.23 2.60 44.17 0.11 11.35 16 3 H -0.02 -1.05 7.80 -2.39 -0.02 -1.07 16 4 C -0.54 -30.68 8.59 25.60 0.22 -30.46 16 5 H 0.05 3.00 7.62 -2.91 -0.02 2.98 16 6 C 0.02 1.03 5.30 84.66 0.45 1.47 16 7 N -0.91 -52.24 11.32 21.45 0.24 -51.99 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.68 -30.44 5.93 -499.46 -2.96 -33.40 16 13 C 0.03 1.08 4.45 85.56 0.38 1.46 16 14 C 0.52 16.66 7.38 87.66 0.65 17.31 16 15 O -0.54 -21.17 15.34 -3.04 -0.05 -21.22 16 16 N -0.60 -13.17 2.37 -826.14 -1.96 -15.13 16 17 C 0.15 2.95 5.33 85.63 0.46 3.40 16 18 C -0.12 -2.28 5.46 -19.87 -0.11 -2.39 16 19 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 20 C -0.14 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 23 C -0.11 -1.45 9.70 22.27 0.22 -1.23 16 24 C 0.07 0.99 5.33 86.38 0.46 1.45 16 25 C 0.43 8.06 3.29 71.98 0.24 8.29 16 26 F -0.18 -3.40 16.23 44.97 0.73 -2.67 16 27 F -0.18 -3.23 17.32 44.97 0.78 -2.45 16 28 F -0.20 -5.15 14.29 44.97 0.64 -4.51 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 31 H 0.03 1.26 7.45 -2.38 -0.02 1.24 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.33 15.71 7.92 -89.70 -0.71 15.00 16 34 H 0.11 3.34 6.70 -2.39 -0.02 3.32 16 35 H 0.07 2.34 5.39 -2.39 -0.01 2.33 16 36 H 0.12 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 38 H 0.10 2.98 7.61 -2.91 -0.02 2.96 16 39 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.17 1.01 8.07 -2.39 -0.02 0.99 16 44 H 0.14 1.84 6.44 -2.38 -0.02 1.82 16 Total: -1.00 -70.42 374.44 4.41 -66.01 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.33 Total: 21.85 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.62 Total: -2.75 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.68 Total: -100.53 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 2.15 Total: -9.63 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.42 4.41 -66.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.591 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds