Wall clock time and date at job start Wed Apr 1 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50962 * 2 1 4 4 C 1.53298 * 109.55348 * 120.12696 * 2 1 3 5 5 N 1.47149 * 108.38695 * 67.64491 * 4 2 1 6 6 C 1.34771 * 120.98525 * 230.55935 * 5 4 2 7 7 O 1.21665 * 119.99736 * 172.76728 * 6 5 4 8 8 C 1.46889 * 119.99972 * 352.76544 * 6 5 4 9 9 C 1.36123 * 125.43730 * 334.10621 * 8 6 5 10 10 C 1.41696 * 107.74891 * 179.84668 * 9 8 6 11 11 C 1.40019 * 133.35244 * 180.19948 * 10 9 8 12 12 C 1.36578 * 119.83627 * 180.29575 * 11 10 9 13 13 C 1.38861 * 120.59381 * 359.95453 * 12 11 10 14 14 C 1.37839 * 120.63740 * 0.02562 * 13 12 11 15 15 C 1.39095 * 119.81382 * 0.02562 * 14 13 12 16 16 N 1.37837 * 133.16343 * 180.02562 * 15 14 13 17 17 C 1.36881 * 125.62103 * 359.93722 * 16 15 14 18 18 H 1.08006 * 120.00155 * 217.61887 * 17 16 15 19 19 C 1.39010 * 120.00395 * 37.61511 * 17 16 15 20 20 N 1.31355 * 119.99838 * 18.76158 * 19 17 16 21 21 Si 1.86798 * 120.00371 * 198.76253 * 19 17 16 22 22 H 1.48504 * 109.47232 * 59.99859 * 21 19 17 23 23 H 1.48500 * 109.47359 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47040 * 300.00001 * 21 19 17 25 25 C 1.47154 * 118.03209 * 50.53910 * 5 4 2 26 26 C 1.53303 * 108.38135 * 309.46113 * 25 5 4 27 27 H 1.08992 * 109.51393 * 292.37512 * 26 25 5 28 28 C 1.53007 * 109.50926 * 172.27844 * 26 25 5 29 29 O 1.42897 * 109.46779 * 175.00393 * 28 26 25 30 30 O 1.42960 * 109.22269 * 52.30796 * 26 25 5 31 31 H 1.09001 * 109.46829 * 180.10208 * 1 2 3 32 32 H 1.09000 * 109.47416 * 300.09846 * 1 2 3 33 33 H 1.08995 * 109.47113 * 60.10270 * 1 2 3 34 34 H 1.09002 * 109.68070 * 187.37435 * 4 2 1 35 35 H 1.09003 * 109.67823 * 307.92418 * 4 2 1 36 36 H 1.08001 * 126.12575 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.08501 * 0.27448 * 11 10 9 38 38 H 1.07997 * 119.70617 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.68010 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.09738 * 180.02562 * 14 13 12 41 41 H 0.96994 * 119.99790 * 184.38799 * 20 19 17 42 42 H 1.09001 * 109.68165 * 189.74201 * 25 5 4 43 43 H 1.08994 * 109.68253 * 69.18284 * 25 5 4 44 44 H 1.09004 * 109.46972 * 295.00225 * 28 26 25 45 45 H 1.08998 * 109.46774 * 55.00177 * 28 26 25 46 46 H 0.96700 * 113.99513 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7251 1.2494 5 7 1.6979 -2.1508 1.1333 6 6 1.0737 -2.7976 2.1374 7 8 0.6791 -3.9369 1.9747 8 6 0.8697 -2.1270 3.4283 9 6 1.6398 -1.1205 3.9253 10 6 1.1087 -0.7526 5.1863 11 6 1.4732 0.2051 6.1405 12 6 0.7518 0.3238 7.2941 13 6 -0.3429 -0.4970 7.5307 14 6 -0.7214 -1.4469 6.6064 15 6 -0.0016 -1.5872 5.4245 16 7 -0.1302 -2.4224 4.3356 17 6 -1.0908 -3.3847 4.1781 18 1 -0.8413 -4.3254 3.7096 19 6 -2.3876 -3.1515 4.6211 20 7 -2.7941 -1.9227 4.8450 21 14 -3.5522 -4.5856 4.8982 22 1 -2.9812 -5.4960 5.9231 23 1 -4.8652 -4.0737 5.3664 24 1 -3.7361 -5.3270 3.6247 25 6 2.0542 -2.8494 -0.1119 26 6 1.5405 -2.0208 -1.2950 27 1 0.4506 -2.0290 -1.2993 28 6 2.0612 -2.6202 -2.6030 29 8 1.4892 -1.9192 -3.7090 30 8 2.0076 -0.6758 -1.1658 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5153 0.8891 33 1 -0.3633 0.5122 -0.8909 34 1 3.1251 -0.6138 1.3201 35 1 1.5715 -0.3044 2.1376 36 1 2.4997 -0.6794 3.4433 37 1 2.3230 0.8481 5.9648 38 1 1.0351 1.0630 8.0288 39 1 -0.9032 -0.3901 8.4479 40 1 -1.5746 -2.0804 6.7992 41 1 -3.6768 -1.7636 5.2144 42 1 1.5900 -3.8355 -0.1253 43 1 3.1373 -2.9519 -0.1783 44 1 3.1469 -2.5293 -2.6374 45 1 1.7828 -3.6726 -2.6565 46 1 1.7754 -2.2468 -4.5727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615856637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:11 Heat of formation + Delta-G solvation = -48.521091 kcal Electronic energy + Delta-G solvation = -31393.998940 eV Core-core repulsion = 27249.952423 eV Total energy + Delta-G solvation = -4144.046517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80198 -39.85528 -37.99851 -36.74448 -35.85886 -34.57175 -33.61967 -32.72828 -30.75774 -29.81979 -29.01847 -28.26032 -26.61621 -25.59616 -24.86598 -22.67344 -22.60455 -20.99255 -20.36729 -19.68218 -18.94975 -17.82798 -17.53535 -16.74257 -16.43769 -15.92911 -15.52888 -15.34206 -15.12739 -14.76298 -14.57108 -14.52593 -14.14095 -13.94228 -13.58501 -13.28666 -13.17384 -12.92661 -12.67861 -12.52898 -12.48556 -12.10479 -11.83803 -11.77287 -11.55120 -11.33043 -11.24384 -11.20582 -11.15604 -10.77840 -10.61862 -10.41885 -10.27493 -10.13630 -9.87789 -9.79975 -9.29579 -9.10519 -8.63265 -8.26610 -7.22512 -6.87487 -6.58149 -4.46307 1.81022 2.74224 2.97621 3.02347 3.03891 3.09734 3.11364 3.65700 3.82258 4.05433 4.11143 4.59704 4.68049 4.81844 4.94793 5.01081 5.04197 5.06288 5.17334 5.23152 5.37552 5.39046 5.44244 5.63598 5.72858 5.81591 5.84764 5.93573 5.93886 6.00683 6.08406 6.11319 6.28649 6.40065 6.51570 6.61256 6.71881 6.85870 6.99715 7.06425 7.14163 7.21729 7.45380 7.46830 7.55442 7.63723 7.68616 7.93273 8.06853 8.38396 8.66039 8.86633 9.28358 10.16675 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004125 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.984160 B = 6786.127928 C = 8279.940916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 H 0.112 0.888 4 C 0.061 3.939 5 N -0.610 5.610 6 C 0.598 3.402 7 O -0.536 6.536 8 C -0.021 4.021 9 C -0.219 4.219 10 C -0.121 4.121 11 C -0.093 4.093 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.048 4.048 15 C 0.083 3.917 16 N -0.226 5.226 17 C -0.342 4.342 18 H 0.120 0.880 19 C 0.052 3.948 20 N -0.818 5.818 21 Si 0.928 3.072 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.265 1.265 25 C 0.092 3.908 26 C 0.074 3.926 27 H 0.075 0.925 28 C 0.088 3.912 29 O -0.564 6.564 30 O -0.367 6.367 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.282 0.718 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 2.550 -8.182 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 H 0.130 0.870 4 C -0.062 4.062 5 N -0.345 5.345 6 C 0.390 3.610 7 O -0.413 6.413 8 C -0.139 4.139 9 C -0.246 4.246 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.173 4.173 13 C -0.175 4.175 14 C -0.068 4.068 15 C -0.031 4.031 16 N 0.114 4.886 17 C -0.470 4.470 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.447 5.447 21 Si 0.751 3.249 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.031 4.031 26 C 0.015 3.985 27 H 0.093 0.907 28 C 0.009 3.991 29 O -0.369 6.369 30 O -0.286 6.286 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.742 2.185 -7.976 10.670 hybrid contribution -0.584 -0.872 -0.134 1.058 sum 6.158 1.313 -8.110 10.267 Atomic orbital electron populations 1.22342 0.95596 1.03199 1.02751 1.22649 0.94462 0.96417 0.84829 0.86984 1.23122 1.00990 0.81080 1.00999 1.47577 1.60910 1.10708 1.15345 1.17260 0.76200 0.85070 0.82516 1.90731 1.49605 1.18550 1.82398 1.19497 0.99954 1.02031 0.92405 1.20489 1.04289 1.02017 0.97825 1.17937 0.98140 1.00103 0.96341 1.20015 0.99501 0.98082 0.93634 1.20278 0.97987 1.01276 0.97755 1.20546 0.99160 0.98488 0.99310 1.20127 0.97449 0.97962 0.91236 1.18130 0.97846 0.96987 0.90138 1.39936 1.17927 1.22208 1.08536 1.20111 0.87999 0.96146 1.42777 0.86213 1.25671 0.97521 0.97629 0.95238 1.70025 1.20434 1.19593 1.34598 0.85968 0.78427 0.80583 0.79894 1.18834 1.20161 1.18908 1.22006 1.00485 0.97445 0.83198 1.22438 0.99682 0.83483 0.92855 0.90729 1.22076 0.97250 0.94415 0.85336 1.86554 1.72250 1.61690 1.16428 1.88000 1.72006 1.24777 1.43805 0.91996 0.90909 0.91993 0.90966 0.85440 0.84899 0.87852 0.87969 0.87719 0.86916 0.90721 0.88071 0.90957 0.92624 0.91918 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.81 37.16 0.33 -2.41 16 2 C 0.07 1.02 3.92 -26.58 -0.10 0.92 16 3 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.06 0.89 4.53 -3.53 -0.02 0.88 16 5 N -0.61 -10.49 2.54 -173.74 -0.44 -10.94 16 6 C 0.60 13.09 7.51 -12.76 -0.10 13.00 16 7 O -0.54 -13.17 14.73 5.22 0.08 -13.09 16 8 C -0.02 -0.49 6.32 -82.25 -0.52 -1.01 16 9 C -0.22 -4.58 8.40 -39.02 -0.33 -4.90 16 10 C -0.12 -2.71 6.16 -106.89 -0.66 -3.37 16 11 C -0.09 -1.83 10.06 -39.51 -0.40 -2.22 16 12 C -0.15 -2.90 9.97 -39.95 -0.40 -3.30 16 13 C -0.15 -3.13 10.02 -39.50 -0.40 -3.52 16 14 C -0.05 -1.13 8.55 -39.41 -0.34 -1.47 16 15 C 0.08 2.09 6.09 -83.83 -0.51 1.58 16 16 N -0.23 -5.92 2.84 -56.08 -0.16 -6.08 16 17 C -0.34 -9.18 9.12 -15.01 -0.14 -9.32 16 18 H 0.12 3.31 6.73 -52.48 -0.35 2.96 16 19 C 0.05 1.32 4.40 -17.47 -0.08 1.24 16 20 N -0.82 -21.14 10.88 55.50 0.60 -20.54 16 21 Si 0.93 19.47 29.59 -169.99 -5.03 14.44 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 C 0.09 1.32 5.95 -3.53 -0.02 1.30 16 26 C 0.07 1.02 2.67 -26.57 -0.07 0.94 16 27 H 0.07 1.16 6.25 -51.93 -0.32 0.84 16 28 C 0.09 0.92 6.71 37.16 0.25 1.17 16 29 O -0.56 -6.31 13.63 -39.67 -0.54 -6.85 16 30 O -0.37 -5.31 10.20 -39.67 -0.40 -5.72 16 31 H 0.06 1.07 6.12 -51.93 -0.32 0.76 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.13 2.06 4.36 -51.93 -0.23 1.83 16 36 H 0.13 2.29 6.03 -52.49 -0.32 1.97 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.11 2.73 6.38 -52.49 -0.33 2.39 16 41 H 0.28 6.77 8.31 -40.82 -0.34 6.44 16 42 H 0.10 1.53 7.06 -51.93 -0.37 1.17 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.38 2.20 9.12 45.56 0.42 2.62 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.15 366.42 -9.05 -41.20 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.19 Total: 12.54 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.49 Total: -10.50 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.00 Total: -37.55 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.87 Total: -25.66 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.15 -9.05 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615856637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.321 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds