Wall clock time and date at job start Wed Apr 1 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50962 * 2 1 4 4 C 1.53298 * 109.55348 * 120.12696 * 2 1 3 5 5 N 1.47149 * 108.38695 * 67.64491 * 4 2 1 6 6 C 1.34771 * 120.98525 * 230.55935 * 5 4 2 7 7 O 1.21665 * 119.99736 * 172.76728 * 6 5 4 8 8 C 1.46889 * 119.99972 * 352.76544 * 6 5 4 9 9 C 1.36123 * 125.43730 * 334.10621 * 8 6 5 10 10 C 1.41696 * 107.74891 * 179.84668 * 9 8 6 11 11 C 1.40019 * 133.35244 * 180.19948 * 10 9 8 12 12 C 1.36578 * 119.83627 * 180.29575 * 11 10 9 13 13 C 1.38861 * 120.59381 * 359.95453 * 12 11 10 14 14 C 1.37839 * 120.63740 * 0.02562 * 13 12 11 15 15 C 1.39095 * 119.81382 * 0.02562 * 14 13 12 16 16 N 1.37837 * 133.16343 * 180.02562 * 15 14 13 17 17 C 1.36881 * 125.62103 * 359.93722 * 16 15 14 18 18 H 1.08006 * 120.00155 * 217.61887 * 17 16 15 19 19 C 1.39010 * 120.00395 * 37.61511 * 17 16 15 20 20 N 1.31355 * 119.99838 * 18.76158 * 19 17 16 21 21 Si 1.86798 * 120.00371 * 198.76253 * 19 17 16 22 22 H 1.48504 * 109.47232 * 59.99859 * 21 19 17 23 23 H 1.48500 * 109.47359 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47040 * 300.00001 * 21 19 17 25 25 C 1.47154 * 118.03209 * 50.53910 * 5 4 2 26 26 C 1.53303 * 108.38135 * 309.46113 * 25 5 4 27 27 H 1.08992 * 109.51393 * 292.37512 * 26 25 5 28 28 C 1.53007 * 109.50926 * 172.27844 * 26 25 5 29 29 O 1.42897 * 109.46779 * 175.00393 * 28 26 25 30 30 O 1.42960 * 109.22269 * 52.30796 * 26 25 5 31 31 H 1.09001 * 109.46829 * 180.10208 * 1 2 3 32 32 H 1.09000 * 109.47416 * 300.09846 * 1 2 3 33 33 H 1.08995 * 109.47113 * 60.10270 * 1 2 3 34 34 H 1.09002 * 109.68070 * 187.37435 * 4 2 1 35 35 H 1.09003 * 109.67823 * 307.92418 * 4 2 1 36 36 H 1.08001 * 126.12575 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.08501 * 0.27448 * 11 10 9 38 38 H 1.07997 * 119.70617 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.68010 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.09738 * 180.02562 * 14 13 12 41 41 H 0.96994 * 119.99790 * 184.38799 * 20 19 17 42 42 H 1.09001 * 109.68165 * 189.74201 * 25 5 4 43 43 H 1.08994 * 109.68253 * 69.18284 * 25 5 4 44 44 H 1.09004 * 109.46972 * 295.00225 * 28 26 25 45 45 H 1.08998 * 109.46774 * 55.00177 * 28 26 25 46 46 H 0.96700 * 113.99513 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7251 1.2494 5 7 1.6979 -2.1508 1.1333 6 6 1.0737 -2.7976 2.1374 7 8 0.6791 -3.9369 1.9747 8 6 0.8697 -2.1270 3.4283 9 6 1.6398 -1.1205 3.9253 10 6 1.1087 -0.7526 5.1863 11 6 1.4732 0.2051 6.1405 12 6 0.7518 0.3238 7.2941 13 6 -0.3429 -0.4970 7.5307 14 6 -0.7214 -1.4469 6.6064 15 6 -0.0016 -1.5872 5.4245 16 7 -0.1302 -2.4224 4.3356 17 6 -1.0908 -3.3847 4.1781 18 1 -0.8413 -4.3254 3.7096 19 6 -2.3876 -3.1515 4.6211 20 7 -2.7941 -1.9227 4.8450 21 14 -3.5522 -4.5856 4.8982 22 1 -2.9812 -5.4960 5.9231 23 1 -4.8652 -4.0737 5.3664 24 1 -3.7361 -5.3270 3.6247 25 6 2.0542 -2.8494 -0.1119 26 6 1.5405 -2.0208 -1.2950 27 1 0.4506 -2.0290 -1.2993 28 6 2.0612 -2.6202 -2.6030 29 8 1.4892 -1.9192 -3.7090 30 8 2.0076 -0.6758 -1.1658 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5153 0.8891 33 1 -0.3633 0.5122 -0.8909 34 1 3.1251 -0.6138 1.3201 35 1 1.5715 -0.3044 2.1376 36 1 2.4997 -0.6794 3.4433 37 1 2.3230 0.8481 5.9648 38 1 1.0351 1.0630 8.0288 39 1 -0.9032 -0.3901 8.4479 40 1 -1.5746 -2.0804 6.7992 41 1 -3.6768 -1.7636 5.2144 42 1 1.5900 -3.8355 -0.1253 43 1 3.1373 -2.9519 -0.1783 44 1 3.1469 -2.5293 -2.6374 45 1 1.7828 -3.6726 -2.6565 46 1 1.7754 -2.2468 -4.5727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615856637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:10 Heat of formation + Delta-G solvation = -70.528448 kcal Electronic energy + Delta-G solvation = -31394.953251 eV Core-core repulsion = 27249.952423 eV Total energy + Delta-G solvation = -4145.000828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40253 -41.23212 -39.48767 -37.64313 -37.49548 -36.05852 -35.33141 -33.87493 -32.48494 -31.08421 -30.68502 -29.77284 -27.88355 -27.00379 -26.56484 -24.13336 -23.76555 -22.65515 -21.86114 -21.17060 -20.38692 -19.51877 -18.43146 -17.99983 -17.90410 -17.37870 -17.20777 -16.72649 -16.57208 -16.41312 -15.85084 -15.80474 -15.47311 -15.24911 -15.04162 -14.70051 -14.61039 -14.52367 -14.21020 -14.01033 -13.87251 -13.62772 -13.38429 -13.10238 -13.02587 -12.96455 -12.84564 -12.41648 -12.37223 -12.23003 -12.17730 -11.95801 -11.58036 -11.45334 -11.22061 -10.98306 -10.90745 -10.88372 -10.33679 -9.62200 -9.00228 -8.63063 -8.31648 -6.40565 0.15181 1.09973 1.26655 1.33249 1.36867 1.41881 1.65178 2.09889 2.38060 2.61971 2.83856 2.99538 3.16507 3.37921 3.62078 3.76345 3.88519 3.94210 4.00654 4.22382 4.22851 4.25360 4.36214 4.43937 4.45895 4.50525 4.52554 4.55412 4.68141 4.72326 4.80299 4.84338 4.86443 4.93476 5.02540 5.10434 5.15121 5.20002 5.34349 5.44228 5.46582 5.74986 5.91591 5.97930 6.09579 6.13436 6.25836 6.40929 6.56795 6.91992 6.93980 7.16571 7.45424 8.32132 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004125 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.984160 B = 6786.127928 C = 8279.940916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.147 0.853 4 C 0.057 3.943 5 N -0.601 5.601 6 C 0.590 3.410 7 O -0.579 6.579 8 C -0.050 4.050 9 C -0.190 4.190 10 C -0.146 4.146 11 C -0.084 4.084 12 C -0.155 4.155 13 C -0.138 4.138 14 C -0.092 4.092 15 C 0.059 3.941 16 N -0.262 5.262 17 C -0.375 4.375 18 H 0.094 0.906 19 C 0.019 3.981 20 N -0.847 5.847 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.261 1.261 24 H -0.269 1.269 25 C 0.090 3.910 26 C 0.076 3.924 27 H 0.046 0.954 28 C 0.092 3.908 29 O -0.588 6.588 30 O -0.367 6.367 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.175 0.825 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.284 0.716 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 4.927 -8.278 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.021 3.979 3 H 0.165 0.835 4 C -0.064 4.064 5 N -0.334 5.334 6 C 0.382 3.618 7 O -0.460 6.460 8 C -0.166 4.166 9 C -0.217 4.217 10 C -0.150 4.150 11 C -0.103 4.103 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.112 4.112 15 C -0.056 4.056 16 N 0.076 4.924 17 C -0.503 4.503 18 H 0.111 0.889 19 C -0.190 4.190 20 N -0.477 5.477 21 Si 0.807 3.193 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.194 1.194 25 C -0.032 4.032 26 C 0.017 3.983 27 H 0.064 0.936 28 C 0.014 3.986 29 O -0.397 6.397 30 O -0.286 6.286 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.192 0.808 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.387 4.590 -8.123 13.235 hybrid contribution -1.235 -1.441 -0.115 1.902 sum 8.151 3.149 -8.238 12.009 Atomic orbital electron populations 1.22301 0.97327 1.01054 1.02778 1.22753 0.92986 0.97904 0.84232 0.83534 1.23317 1.02848 0.79246 1.01016 1.47636 1.59047 1.11783 1.14942 1.17352 0.76497 0.84756 0.83217 1.90692 1.51692 1.20405 1.83194 1.20092 0.99863 1.03326 0.93331 1.20957 1.03972 0.99957 0.96779 1.18420 0.97925 1.00968 0.97703 1.20503 1.00205 0.96926 0.92636 1.20766 0.96768 1.01355 0.98459 1.20989 0.99170 0.96610 0.99047 1.20198 0.98190 1.00251 0.92564 1.18693 0.99074 0.97366 0.90426 1.40088 1.19000 1.23419 1.09862 1.19946 0.89316 0.96221 1.44805 0.88866 1.26381 0.98168 0.99871 0.94604 1.70083 1.20799 1.20974 1.35834 0.85123 0.77033 0.77702 0.79434 1.18489 1.18470 1.19411 1.22216 1.02121 0.96735 0.82144 1.22449 0.98205 0.83332 0.94356 0.93615 1.22068 0.98173 0.94755 0.83637 1.86482 1.72893 1.62402 1.17889 1.88012 1.71760 1.24966 1.43862 0.95235 0.91778 0.91002 0.87498 0.86888 0.80817 0.83696 0.83510 0.84994 0.89094 0.90547 0.89534 0.87827 0.90481 0.90209 0.74918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 8.81 71.98 0.63 -4.73 16 2 C 0.08 1.99 3.92 30.69 0.12 2.11 16 3 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.06 1.56 4.53 86.36 0.39 1.95 16 5 N -0.60 -20.56 2.54 -821.81 -2.09 -22.65 16 6 C 0.59 27.01 7.51 86.51 0.65 27.66 16 7 O -0.58 -30.56 14.73 -4.24 -0.06 -30.62 16 8 C -0.05 -2.44 6.32 39.91 0.25 -2.19 16 9 C -0.19 -7.74 8.40 22.63 0.19 -7.55 16 10 C -0.15 -6.40 6.16 -21.34 -0.13 -6.53 16 11 C -0.08 -2.98 10.06 22.31 0.22 -2.76 16 12 C -0.15 -5.23 9.97 22.03 0.22 -5.01 16 13 C -0.14 -5.37 10.02 22.32 0.22 -5.14 16 14 C -0.09 -4.46 8.55 22.38 0.19 -4.27 16 15 C 0.06 3.03 6.09 39.06 0.24 3.26 16 16 N -0.26 -14.51 2.84 -331.34 -0.94 -15.45 16 17 C -0.37 -21.78 9.12 84.09 0.77 -21.01 16 18 H 0.09 5.70 6.73 -2.91 -0.02 5.68 16 19 C 0.02 1.03 4.40 84.95 0.37 1.41 16 20 N -0.85 -46.35 10.88 21.67 0.24 -46.11 16 21 Si 0.99 42.40 29.59 68.60 2.03 44.43 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.09 2.53 5.95 86.36 0.51 3.05 16 26 C 0.08 1.99 2.67 30.70 0.08 2.07 16 27 H 0.05 1.47 6.25 -2.39 -0.01 1.46 16 28 C 0.09 1.74 6.71 71.98 0.48 2.22 16 29 O -0.59 -12.00 13.63 -144.74 -1.97 -13.97 16 30 O -0.37 -9.74 10.20 -144.74 -1.48 -11.22 16 31 H 0.03 1.07 6.12 -2.39 -0.01 1.05 16 32 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 35 H 0.11 3.44 4.36 -2.39 -0.01 3.43 16 36 H 0.17 5.41 6.03 -2.91 -0.02 5.39 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.09 4.68 6.38 -2.91 -0.02 4.66 16 41 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.09 2.71 7.06 -2.39 -0.02 2.69 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.40 3.75 9.12 -74.06 -0.68 3.08 16 Total: -1.00 -76.93 366.42 1.51 -75.42 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.36 Total: 35.63 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.42 Total: -15.45 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.79 Total: -84.21 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -3.51 Total: -55.81 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -76.93 1.51 -75.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615856637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.890 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds