Wall clock time and date at job start Wed Apr 1 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.51915 * 2 1 4 4 C 1.53297 * 109.51435 * 239.89586 * 2 1 3 5 5 N 1.47152 * 108.38916 * 187.72783 * 4 2 1 6 6 C 1.34778 * 120.98073 * 230.51530 * 5 4 2 7 7 O 1.21661 * 119.99674 * 187.07354 * 6 5 4 8 8 C 1.46884 * 120.00086 * 7.06967 * 6 5 4 9 9 C 1.36126 * 125.44058 * 28.09980 * 8 6 5 10 10 C 1.41695 * 107.75143 * 179.97438 * 9 8 6 11 11 C 1.40027 * 133.34608 * 179.97438 * 10 9 8 12 12 C 1.36575 * 119.82594 * 180.02562 * 11 10 9 13 13 C 1.38858 * 120.60238 * 0.02562 * 12 11 10 14 14 C 1.37841 * 120.63339 * 0.02562 * 13 12 11 15 15 C 1.39087 * 119.81492 * 359.97438 * 14 13 12 16 16 N 1.37834 * 133.16451 * 179.97438 * 15 14 13 17 17 C 1.36888 * 125.62399 * 359.95788 * 16 15 14 18 18 H 1.08008 * 120.00036 * 142.24697 * 17 16 15 19 19 C 1.39015 * 120.00071 * 322.25477 * 17 16 15 20 20 N 1.31352 * 119.99346 * 341.15087 * 19 17 16 21 21 Si 1.86798 * 120.00083 * 161.15183 * 19 17 16 22 22 H 1.48506 * 109.47019 * 65.02841 * 21 19 17 23 23 H 1.48504 * 109.46846 * 185.02389 * 21 19 17 24 24 H 1.48493 * 109.47195 * 305.02552 * 21 19 17 25 25 C 1.47152 * 118.03304 * 50.78392 * 5 4 2 26 26 C 1.53710 * 108.16469 * 309.16071 * 25 5 4 27 27 H 1.09003 * 109.65387 * 292.57430 * 26 25 5 28 28 C 1.52995 * 109.44541 * 172.37508 * 26 25 5 29 29 O 1.42901 * 109.47268 * 175.38754 * 28 26 25 30 30 O 1.42960 * 109.14859 * 52.53604 * 26 25 5 31 31 H 1.08994 * 109.47655 * 177.11669 * 1 2 3 32 32 H 1.08998 * 109.47100 * 297.12493 * 1 2 3 33 33 H 1.09004 * 109.46614 * 57.11388 * 1 2 3 34 34 H 1.09004 * 109.67930 * 67.99682 * 4 2 1 35 35 H 1.09008 * 109.71147 * 307.47139 * 4 2 1 36 36 H 1.08004 * 126.12160 * 0.02562 * 9 8 6 37 37 H 1.07994 * 120.08463 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.69714 * 180.27565 * 12 11 10 39 39 H 1.07997 * 119.68335 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.09495 * 180.02562 * 14 13 12 41 41 H 0.96997 * 119.99550 * 185.11173 * 20 19 17 42 42 H 1.09002 * 109.68126 * 68.94146 * 25 5 4 43 43 H 1.09008 * 109.67941 * 189.49387 * 25 5 4 44 44 H 1.08999 * 109.47235 * 295.39180 * 28 26 25 45 45 H 1.09004 * 109.46980 * 55.38714 * 28 26 25 46 46 H 0.96700 * 113.99634 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5013 -0.8748 -1.1345 6 6 4.3188 -0.5021 -2.1392 7 8 5.5082 -0.7510 -2.0797 8 6 3.7736 0.2044 -3.3059 9 6 2.6697 1.0009 -3.3015 10 6 2.4839 1.4889 -4.6187 11 6 1.5332 2.3329 -5.2058 12 6 1.6173 2.6290 -6.5364 13 6 2.6381 2.1001 -7.3152 14 6 3.5849 1.2661 -6.7601 15 6 3.5201 0.9501 -5.4072 16 7 4.2986 0.1653 -4.5839 17 6 5.4091 -0.5368 -4.9683 18 1 6.2597 -0.6068 -4.3064 19 6 5.4420 -1.1595 -6.2108 20 7 4.3227 -1.3994 -6.8549 21 14 7.0780 -1.6552 -6.9640 22 1 7.7114 -2.7045 -6.1254 23 1 6.8524 -2.1848 -8.3329 24 1 7.9706 -0.4705 -7.0324 25 6 4.0413 -1.4494 0.1079 26 6 3.4322 -0.6844 1.2939 27 1 3.8033 0.3405 1.2986 28 6 3.8231 -1.3765 2.6012 29 8 3.3484 -0.6072 3.7079 30 8 2.0085 -0.6762 1.1652 31 1 -0.3634 -1.0263 -0.0517 32 1 -0.3633 0.4685 0.9146 33 1 -0.3633 0.5580 -0.8630 34 1 1.8022 -0.1394 -2.1378 35 1 1.5764 -1.7077 -1.3217 36 1 2.0474 1.2219 -2.4468 37 1 0.7352 2.7479 -4.6082 38 1 0.8856 3.2838 -6.9862 39 1 2.6907 2.3444 -8.3658 40 1 4.3753 0.8599 -7.3738 41 1 4.3391 -1.8993 -7.6860 42 1 3.7735 -2.5041 0.1713 43 1 5.1262 -1.3442 0.1199 44 1 3.3786 -2.3712 2.6328 45 1 4.9084 -1.4617 2.6568 46 1 3.5613 -0.9874 4.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615856640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:23 Heat of formation + Delta-G solvation = -45.961038 kcal Electronic energy + Delta-G solvation = -31080.259745 eV Core-core repulsion = 26936.324240 eV Total energy + Delta-G solvation = -4143.935505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.77797 -39.72747 -37.99433 -36.77858 -35.86636 -34.57581 -33.68066 -33.11987 -30.77962 -29.85592 -29.01483 -28.27897 -26.46660 -25.55775 -24.89121 -22.66834 -21.95044 -21.16523 -20.70969 -20.06009 -19.03218 -17.82833 -17.53890 -16.89302 -16.32910 -16.10693 -15.48577 -15.32366 -15.25319 -14.81371 -14.51778 -14.42858 -14.09311 -14.01493 -13.64384 -13.24537 -12.99680 -12.88233 -12.71950 -12.56310 -12.48492 -12.27103 -12.07134 -11.83482 -11.57215 -11.37086 -11.27758 -11.15240 -11.04903 -10.77522 -10.64940 -10.50953 -10.26294 -10.19659 -9.94250 -9.80094 -9.29563 -9.13438 -8.63663 -8.28457 -7.18849 -6.86365 -6.64101 -4.46139 1.81160 2.74358 2.99187 2.99825 3.02430 3.07205 3.10498 3.56050 3.78128 3.96429 4.14655 4.60961 4.63759 4.81849 4.86169 4.96322 5.05585 5.07788 5.11061 5.19685 5.31204 5.35863 5.47979 5.62893 5.63705 5.80755 5.84175 5.87632 5.91414 5.94328 6.03966 6.06522 6.20058 6.28679 6.52295 6.59571 6.72585 6.86164 6.98425 7.06178 7.14310 7.20036 7.43293 7.45470 7.55661 7.64196 7.68292 7.93044 8.06452 8.36411 8.64937 8.85082 9.26829 10.14786 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003936 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.910536 B = 7111.497508 C = 8974.501675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.044 3.956 5 N -0.612 5.612 6 C 0.598 3.402 7 O -0.536 6.536 8 C -0.021 4.021 9 C -0.225 4.225 10 C -0.118 4.118 11 C -0.095 4.095 12 C -0.152 4.152 13 C -0.156 4.156 14 C -0.046 4.046 15 C 0.082 3.918 16 N -0.224 5.224 17 C -0.345 4.345 18 H 0.121 0.879 19 C 0.052 3.948 20 N -0.818 5.818 21 Si 0.932 3.068 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.262 1.262 25 C 0.092 3.908 26 C 0.080 3.920 27 H 0.069 0.931 28 C 0.087 3.913 29 O -0.565 6.565 30 O -0.369 6.369 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.283 0.717 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 0.494 11.101 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.081 0.919 4 C -0.078 4.078 5 N -0.347 5.347 6 C 0.390 3.610 7 O -0.412 6.412 8 C -0.139 4.139 9 C -0.252 4.252 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.171 4.171 13 C -0.177 4.177 14 C -0.065 4.065 15 C -0.033 4.033 16 N 0.116 4.884 17 C -0.473 4.473 18 H 0.139 0.861 19 C -0.161 4.161 20 N -0.446 5.446 21 Si 0.756 3.244 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.186 1.186 25 C -0.031 4.031 26 C 0.021 3.979 27 H 0.087 0.913 28 C 0.009 3.991 29 O -0.370 6.370 30 O -0.288 6.288 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.241 0.376 10.436 11.271 hybrid contribution 0.961 -0.857 -0.177 1.300 sum -3.280 -0.480 10.259 10.781 Atomic orbital electron populations 1.21714 0.92250 1.03112 1.02837 1.22502 0.95452 0.95559 0.84904 0.91875 1.23383 0.79850 1.02883 1.01721 1.47627 1.06860 1.64323 1.15919 1.17264 0.85134 0.77315 0.81287 1.90726 1.15704 1.55751 1.79063 1.19479 0.98084 1.08445 0.87940 1.20385 0.99924 1.08589 0.96276 1.17923 0.98167 1.02742 0.93443 1.20008 0.98016 0.98828 0.94534 1.20278 0.99630 1.03053 0.94175 1.20536 0.96883 1.01716 0.98531 1.20119 0.98754 0.95710 0.91956 1.18119 0.95533 0.96859 0.92757 1.39952 1.17479 1.27118 1.03834 1.20121 0.93289 1.31537 1.02380 0.86106 1.25726 0.99309 0.94724 0.96361 1.69977 1.26785 1.31599 1.16238 0.85891 0.80643 0.79734 0.78168 1.18994 1.20087 1.18647 1.22097 1.00666 0.97294 0.83064 1.22508 0.82592 0.99784 0.92984 0.91265 1.22074 0.97611 0.94202 0.85219 1.86542 1.81765 1.52223 1.16460 1.87957 1.19817 1.77476 1.43557 0.91711 0.91600 0.90441 0.84240 0.91224 0.84656 0.87836 0.87959 0.87717 0.86884 0.90595 0.90897 0.88112 0.92520 0.91826 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 37.15 0.36 -1.16 16 2 C 0.07 0.99 3.32 -26.58 -0.09 0.90 16 3 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.04 0.67 5.30 -3.53 -0.02 0.65 16 5 N -0.61 -10.91 3.01 -173.48 -0.52 -11.43 16 6 C 0.60 13.37 7.48 -12.76 -0.10 13.27 16 7 O -0.54 -13.30 14.85 5.22 0.08 -13.22 16 8 C -0.02 -0.50 6.38 -82.25 -0.53 -1.03 16 9 C -0.22 -4.74 8.54 -39.02 -0.33 -5.08 16 10 C -0.12 -2.67 6.16 -106.89 -0.66 -3.33 16 11 C -0.09 -1.86 10.06 -39.51 -0.40 -2.26 16 12 C -0.15 -2.88 9.97 -39.95 -0.40 -3.27 16 13 C -0.16 -3.17 10.02 -39.50 -0.40 -3.57 16 14 C -0.05 -1.09 8.55 -39.41 -0.34 -1.42 16 15 C 0.08 2.06 6.09 -83.84 -0.51 1.55 16 16 N -0.22 -5.92 2.83 -56.08 -0.16 -6.08 16 17 C -0.34 -9.29 9.15 -15.01 -0.14 -9.43 16 18 H 0.12 3.34 6.76 -52.48 -0.35 2.99 16 19 C 0.05 1.32 4.39 -17.47 -0.08 1.24 16 20 N -0.82 -21.15 10.91 55.50 0.61 -20.54 16 21 Si 0.93 19.40 29.60 -169.99 -5.03 14.37 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.09 1.36 5.93 -3.32 -0.02 1.34 16 26 C 0.08 1.07 3.07 -26.36 -0.08 0.99 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 C 0.09 0.90 6.71 37.15 0.25 1.15 16 29 O -0.56 -6.06 13.63 -39.98 -0.54 -6.60 16 30 O -0.37 -5.28 9.99 -39.98 -0.40 -5.68 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.14 2.29 3.17 -51.93 -0.16 2.13 16 35 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.14 2.36 5.93 -52.48 -0.31 2.05 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.11 2.75 6.41 -52.48 -0.34 2.41 16 41 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.10 1.53 7.14 -51.92 -0.37 1.16 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.38 2.07 9.12 45.56 0.42 2.48 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -32.40 371.15 -9.18 -41.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.33 Total: 11.48 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.47 Total: -9.46 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.08 Total: -38.05 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.87 Total: -25.50 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.40 -9.18 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615856640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds