Wall clock time and date at job start Wed Apr 1 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.51915 * 2 1 4 4 C 1.53297 * 109.51435 * 239.89586 * 2 1 3 5 5 N 1.47152 * 108.38916 * 187.72783 * 4 2 1 6 6 C 1.34778 * 120.98073 * 230.51530 * 5 4 2 7 7 O 1.21661 * 119.99674 * 187.07354 * 6 5 4 8 8 C 1.46884 * 120.00086 * 7.06967 * 6 5 4 9 9 C 1.36126 * 125.44058 * 28.09980 * 8 6 5 10 10 C 1.41695 * 107.75143 * 179.97438 * 9 8 6 11 11 C 1.40027 * 133.34608 * 179.97438 * 10 9 8 12 12 C 1.36575 * 119.82594 * 180.02562 * 11 10 9 13 13 C 1.38858 * 120.60238 * 0.02562 * 12 11 10 14 14 C 1.37841 * 120.63339 * 0.02562 * 13 12 11 15 15 C 1.39087 * 119.81492 * 359.97438 * 14 13 12 16 16 N 1.37834 * 133.16451 * 179.97438 * 15 14 13 17 17 C 1.36888 * 125.62399 * 359.95788 * 16 15 14 18 18 H 1.08008 * 120.00036 * 142.24697 * 17 16 15 19 19 C 1.39015 * 120.00071 * 322.25477 * 17 16 15 20 20 N 1.31352 * 119.99346 * 341.15087 * 19 17 16 21 21 Si 1.86798 * 120.00083 * 161.15183 * 19 17 16 22 22 H 1.48506 * 109.47019 * 65.02841 * 21 19 17 23 23 H 1.48504 * 109.46846 * 185.02389 * 21 19 17 24 24 H 1.48493 * 109.47195 * 305.02552 * 21 19 17 25 25 C 1.47152 * 118.03304 * 50.78392 * 5 4 2 26 26 C 1.53710 * 108.16469 * 309.16071 * 25 5 4 27 27 H 1.09003 * 109.65387 * 292.57430 * 26 25 5 28 28 C 1.52995 * 109.44541 * 172.37508 * 26 25 5 29 29 O 1.42901 * 109.47268 * 175.38754 * 28 26 25 30 30 O 1.42960 * 109.14859 * 52.53604 * 26 25 5 31 31 H 1.08994 * 109.47655 * 177.11669 * 1 2 3 32 32 H 1.08998 * 109.47100 * 297.12493 * 1 2 3 33 33 H 1.09004 * 109.46614 * 57.11388 * 1 2 3 34 34 H 1.09004 * 109.67930 * 67.99682 * 4 2 1 35 35 H 1.09008 * 109.71147 * 307.47139 * 4 2 1 36 36 H 1.08004 * 126.12160 * 0.02562 * 9 8 6 37 37 H 1.07994 * 120.08463 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.69714 * 180.27565 * 12 11 10 39 39 H 1.07997 * 119.68335 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.09495 * 180.02562 * 14 13 12 41 41 H 0.96997 * 119.99550 * 185.11173 * 20 19 17 42 42 H 1.09002 * 109.68126 * 68.94146 * 25 5 4 43 43 H 1.09008 * 109.67941 * 189.49387 * 25 5 4 44 44 H 1.08999 * 109.47235 * 295.39180 * 28 26 25 45 45 H 1.09004 * 109.46980 * 55.38714 * 28 26 25 46 46 H 0.96700 * 113.99634 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5013 -0.8748 -1.1345 6 6 4.3188 -0.5021 -2.1392 7 8 5.5082 -0.7510 -2.0797 8 6 3.7736 0.2044 -3.3059 9 6 2.6697 1.0009 -3.3015 10 6 2.4839 1.4889 -4.6187 11 6 1.5332 2.3329 -5.2058 12 6 1.6173 2.6290 -6.5364 13 6 2.6381 2.1001 -7.3152 14 6 3.5849 1.2661 -6.7601 15 6 3.5201 0.9501 -5.4072 16 7 4.2986 0.1653 -4.5839 17 6 5.4091 -0.5368 -4.9683 18 1 6.2597 -0.6068 -4.3064 19 6 5.4420 -1.1595 -6.2108 20 7 4.3227 -1.3994 -6.8549 21 14 7.0780 -1.6552 -6.9640 22 1 7.7114 -2.7045 -6.1254 23 1 6.8524 -2.1848 -8.3329 24 1 7.9706 -0.4705 -7.0324 25 6 4.0413 -1.4494 0.1079 26 6 3.4322 -0.6844 1.2939 27 1 3.8033 0.3405 1.2986 28 6 3.8231 -1.3765 2.6012 29 8 3.3484 -0.6072 3.7079 30 8 2.0085 -0.6762 1.1652 31 1 -0.3634 -1.0263 -0.0517 32 1 -0.3633 0.4685 0.9146 33 1 -0.3633 0.5580 -0.8630 34 1 1.8022 -0.1394 -2.1378 35 1 1.5764 -1.7077 -1.3217 36 1 2.0474 1.2219 -2.4468 37 1 0.7352 2.7479 -4.6082 38 1 0.8856 3.2838 -6.9862 39 1 2.6907 2.3444 -8.3658 40 1 4.3753 0.8599 -7.3738 41 1 4.3391 -1.8993 -7.6860 42 1 3.7735 -2.5041 0.1713 43 1 5.1262 -1.3442 0.1199 44 1 3.3786 -2.3712 2.6328 45 1 4.9084 -1.4617 2.6568 46 1 3.5613 -0.9874 4.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615856640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:22 Heat of formation + Delta-G solvation = -68.097772 kcal Electronic energy + Delta-G solvation = -31081.219666 eV Core-core repulsion = 26936.324240 eV Total energy + Delta-G solvation = -4144.895426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42083 -41.10684 -39.47087 -37.65402 -37.51562 -36.07943 -35.36735 -34.23378 -32.51272 -31.02472 -30.68851 -29.78117 -27.69481 -26.93715 -26.59803 -24.15947 -22.98263 -22.70730 -22.07197 -21.70186 -20.59818 -19.56093 -18.41775 -17.98889 -17.90076 -17.61204 -17.15278 -16.79616 -16.65938 -16.28495 -15.96839 -15.66527 -15.45775 -15.27553 -14.96965 -14.91912 -14.58890 -14.43609 -14.03951 -13.89384 -13.72226 -13.60647 -13.45532 -13.14709 -13.05010 -12.94659 -12.66140 -12.48290 -12.35988 -12.19530 -12.03377 -11.96291 -11.69878 -11.45911 -11.24666 -11.02800 -10.95664 -10.88110 -10.33935 -9.68358 -8.96227 -8.64804 -8.37387 -6.40588 0.13287 1.09520 1.27143 1.31478 1.37107 1.41305 1.61873 2.07982 2.33864 2.56054 2.79059 2.97189 3.14235 3.36716 3.63275 3.74492 3.80656 3.96713 4.04038 4.20167 4.24189 4.31869 4.34533 4.42927 4.43931 4.46282 4.51710 4.59139 4.69910 4.73743 4.82199 4.87840 4.96629 5.00665 5.05379 5.08859 5.18524 5.31838 5.34467 5.39313 5.45886 5.73011 5.90821 5.97403 6.09448 6.12991 6.24013 6.38367 6.55279 6.89879 6.92047 7.11861 7.43099 8.30916 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003936 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.910536 B = 7111.497508 C = 8974.501675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.061 0.939 4 C 0.043 3.957 5 N -0.605 5.605 6 C 0.591 3.409 7 O -0.576 6.576 8 C -0.052 4.052 9 C -0.197 4.197 10 C -0.143 4.143 11 C -0.086 4.086 12 C -0.152 4.152 13 C -0.139 4.139 14 C -0.089 4.089 15 C 0.056 3.944 16 N -0.259 5.259 17 C -0.380 4.380 18 H 0.096 0.904 19 C 0.020 3.980 20 N -0.847 5.847 21 Si 0.992 3.008 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.262 1.262 25 C 0.089 3.911 26 C 0.083 3.917 27 H 0.055 0.945 28 C 0.092 3.908 29 O -0.586 6.586 30 O -0.374 6.374 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.091 0.909 41 H 0.286 0.714 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 1.515 11.934 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 H 0.079 0.921 4 C -0.078 4.078 5 N -0.339 5.339 6 C 0.382 3.618 7 O -0.456 6.456 8 C -0.168 4.168 9 C -0.224 4.224 10 C -0.147 4.147 11 C -0.104 4.104 12 C -0.171 4.171 13 C -0.159 4.159 14 C -0.109 4.109 15 C -0.058 4.058 16 N 0.080 4.920 17 C -0.508 4.508 18 H 0.113 0.887 19 C -0.190 4.190 20 N -0.476 5.476 21 Si 0.812 3.188 22 H -0.191 1.191 23 H -0.183 1.183 24 H -0.186 1.186 25 C -0.033 4.033 26 C 0.024 3.976 27 H 0.073 0.927 28 C 0.014 3.986 29 O -0.394 6.394 30 O -0.294 6.294 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.191 0.809 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.912 1.386 11.328 13.342 hybrid contribution 1.594 -1.046 -0.342 1.937 sum -5.319 0.340 10.986 12.211 Atomic orbital electron populations 1.21738 0.89802 1.03823 1.04053 1.22576 0.97217 0.94812 0.83499 0.92139 1.23504 0.78218 1.03522 1.02571 1.47720 1.07665 1.62815 1.15664 1.17374 0.85082 0.77417 0.81946 1.90685 1.17369 1.57542 1.80013 1.20065 0.99419 1.09536 0.87828 1.20833 0.98582 1.05918 0.97057 1.18400 0.98665 1.03934 0.93735 1.20502 0.97627 0.96988 0.95322 1.20772 0.99623 1.02832 0.93884 1.20987 0.95604 0.99219 1.00107 1.20188 1.00393 0.98561 0.91789 1.18684 0.96253 0.97084 0.93736 1.40117 1.18333 1.28664 1.04905 1.19983 0.93746 1.33721 1.03322 0.88663 1.26453 1.02395 0.94148 0.96023 1.70037 1.28353 1.32524 1.16680 0.85033 0.76677 0.79187 0.77861 1.19136 1.18305 1.18605 1.22305 1.00368 0.98289 0.82345 1.22524 0.82075 0.99089 0.93892 0.92688 1.22042 0.98851 0.94016 0.83732 1.86467 1.82108 1.53043 1.17822 1.87972 1.20178 1.77514 1.43694 0.91335 0.90742 0.88811 0.85233 0.90485 0.80921 0.83662 0.83428 0.84933 0.89042 0.90348 0.89341 0.89020 0.91195 0.89854 0.74871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 2 C 0.08 1.90 3.32 30.69 0.10 2.01 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.04 1.28 5.30 86.35 0.46 1.74 16 5 N -0.61 -21.81 3.01 -820.99 -2.47 -24.28 16 6 C 0.59 27.62 7.48 86.51 0.65 28.26 16 7 O -0.58 -30.55 14.85 -4.23 -0.06 -30.62 16 8 C -0.05 -2.57 6.38 39.91 0.25 -2.32 16 9 C -0.20 -8.23 8.54 22.63 0.19 -8.04 16 10 C -0.14 -6.34 6.16 -21.34 -0.13 -6.47 16 11 C -0.09 -3.06 10.06 22.31 0.22 -2.83 16 12 C -0.15 -5.15 9.97 22.03 0.22 -4.93 16 13 C -0.14 -5.41 10.02 22.32 0.22 -5.18 16 14 C -0.09 -4.34 8.55 22.38 0.19 -4.14 16 15 C 0.06 2.93 6.09 39.06 0.24 3.17 16 16 N -0.26 -14.42 2.83 -331.33 -0.94 -15.36 16 17 C -0.38 -22.01 9.15 84.09 0.77 -21.24 16 18 H 0.10 5.79 6.76 -2.91 -0.02 5.77 16 19 C 0.02 1.05 4.39 84.95 0.37 1.43 16 20 N -0.85 -45.95 10.91 21.67 0.24 -45.72 16 21 Si 0.99 41.86 29.60 68.60 2.03 43.89 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 C 0.09 2.63 5.93 86.49 0.51 3.14 16 26 C 0.08 2.12 3.07 30.83 0.09 2.22 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 C 0.09 1.70 6.71 71.98 0.48 2.18 16 29 O -0.59 -11.25 13.63 -144.44 -1.97 -13.22 16 30 O -0.37 -9.99 9.99 -144.44 -1.44 -11.44 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.13 4.08 3.17 -2.38 -0.01 4.08 16 35 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.17 5.65 5.93 -2.91 -0.02 5.63 16 37 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.09 4.71 6.41 -2.91 -0.02 4.69 16 41 H 0.29 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.09 2.87 7.14 -2.38 -0.02 2.86 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.40 3.39 9.12 -74.06 -0.68 2.71 16 Total: -1.00 -76.02 371.15 1.27 -74.75 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.35 Total: 34.82 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.54 Total: -12.82 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.18 Total: -85.36 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -3.47 Total: -55.27 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.02 1.27 -74.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615856640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.648 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds