Wall clock time and date at job start Wed Apr 1 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46830 * 2 1 4 4 N 1.46493 * 109.47248 * 119.99960 * 2 1 3 5 5 C 1.34777 * 120.00257 * 84.99964 * 4 2 1 6 6 O 1.21282 * 119.99403 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00203 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47015 * 306.92157 * 7 5 4 9 9 C 1.52999 * 109.47361 * 66.92405 * 7 5 4 10 10 O 1.45207 * 109.47135 * 186.92670 * 7 5 4 11 11 C 1.34865 * 117.00300 * 151.70802 * 10 7 5 12 12 O 1.21590 * 119.99890 * 4.27711 * 11 10 7 13 13 C 1.46706 * 120.00107 * 184.28013 * 11 10 7 14 14 C 1.36217 * 125.45217 * 185.04445 * 13 11 10 15 15 C 1.41655 * 107.74444 * 180.02562 * 14 13 11 16 16 C 1.40042 * 133.33441 * 180.02562 * 15 14 13 17 17 C 1.36570 * 119.83145 * 179.97438 * 16 15 14 18 18 C 1.38869 * 120.59736 * 0.02562 * 17 16 15 19 19 C 1.37838 * 120.63846 * 359.96911 * 18 17 16 20 20 C 1.39091 * 119.81651 * 0.02754 * 19 18 17 21 21 N 1.37818 * 133.15081 * 180.02562 * 20 19 18 22 22 C 1.36881 * 125.61991 * 359.71716 * 21 20 19 23 23 H 1.08001 * 119.99966 * 138.65922 * 22 21 20 24 24 C 1.39016 * 120.00010 * 318.65696 * 22 21 20 25 25 N 1.31346 * 120.00132 * 343.80903 * 24 22 21 26 26 Si 1.86801 * 120.00066 * 163.80805 * 24 22 21 27 27 H 1.48498 * 109.47134 * 94.62184 * 26 24 22 28 28 H 1.48504 * 109.46981 * 214.62178 * 26 24 22 29 29 H 1.48491 * 109.47222 * 334.62192 * 26 24 22 30 30 H 1.09004 * 109.47139 * 60.00265 * 1 2 3 31 31 H 1.09003 * 109.46507 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47087 * 299.99620 * 1 2 3 33 33 H 1.08995 * 109.47087 * 240.00380 * 2 1 3 34 34 H 1.09001 * 109.47375 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46982 * 300.00256 * 3 2 1 36 36 H 1.09007 * 109.46895 * 59.99844 * 3 2 1 37 37 H 0.97000 * 120.00266 * 265.00261 * 4 2 1 38 38 H 1.09001 * 109.46900 * 300.00173 * 9 7 5 39 39 H 1.08999 * 109.46772 * 59.99761 * 9 7 5 40 40 H 1.08996 * 109.47089 * 179.97438 * 9 7 5 41 41 H 1.08005 * 126.12110 * 0.05529 * 14 13 11 42 42 H 1.07999 * 120.08606 * 359.96916 * 16 15 14 43 43 H 1.07993 * 119.70641 * 180.02562 * 17 16 15 44 44 H 1.07998 * 119.67799 * 180.02562 * 18 17 16 45 45 H 1.07998 * 120.09099 * 180.02562 * 19 18 17 46 46 H 0.96996 * 120.00166 * 185.06349 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1944 6 8 1.8591 -2.6676 0.2023 7 6 2.6489 -2.7426 2.4250 8 1 3.5923 -2.2979 2.7420 9 6 1.6185 -2.6072 3.5479 10 8 2.8538 -4.1480 2.1229 11 6 3.7979 -4.7962 2.8352 12 8 4.3778 -4.2243 3.7380 13 6 4.1251 -6.1913 2.5209 14 6 4.9842 -6.9794 3.2255 15 6 5.0205 -8.2482 2.5967 16 6 5.7109 -9.4360 2.8682 17 6 5.5361 -10.5233 2.0605 18 6 4.6789 -10.4629 0.9696 19 6 3.9884 -9.3051 0.6821 20 6 4.1499 -8.1847 1.4902 21 7 3.6115 -6.9163 1.4616 22 6 2.7196 -6.4496 0.5341 23 1 1.8896 -5.8329 0.8457 24 6 2.8823 -6.7694 -0.8090 25 7 4.0325 -7.2360 -1.2384 26 14 1.4649 -6.5355 -2.0031 27 1 1.5858 -5.2099 -2.6613 28 1 1.5035 -7.6049 -3.0327 29 1 0.1786 -6.6058 -1.2644 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4427 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.2491 -0.1823 1.9894 38 1 1.4648 -1.5522 3.7747 39 1 0.6752 -3.0519 3.2308 40 1 1.9813 -3.1215 4.4378 41 1 5.5380 -6.6889 4.1060 42 1 6.3800 -9.4920 3.7141 43 1 6.0692 -11.4383 2.2720 44 1 4.5515 -11.3317 0.3410 45 1 3.3237 -9.2681 -0.1683 46 1 4.1701 -7.3897 -2.1861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729768891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:51 Heat of formation + Delta-G solvation = -85.275746 kcal Electronic energy + Delta-G solvation = -30586.103834 eV Core-core repulsion = 26440.463516 eV Total energy + Delta-G solvation = -4145.640319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32719 -41.51542 -40.49868 -37.74249 -37.57298 -36.89966 -35.41817 -33.82917 -32.54364 -31.65622 -30.71444 -29.87061 -28.12452 -26.79700 -26.34690 -25.02065 -22.80639 -22.58567 -21.91673 -21.47004 -21.04306 -19.90152 -18.91802 -18.49548 -17.63045 -17.37407 -17.11139 -16.77851 -16.51602 -16.34872 -16.21533 -15.38931 -15.29052 -15.09390 -14.81914 -14.66272 -14.48054 -14.34336 -14.13086 -13.71704 -13.65242 -13.54730 -13.41713 -13.22988 -13.11089 -13.07334 -12.93067 -12.66674 -12.37465 -12.34682 -12.22053 -12.00910 -11.96849 -11.89528 -11.81608 -11.49280 -11.01803 -10.85370 -10.44987 -10.23927 -8.96479 -8.71327 -8.41529 -6.39753 -0.09594 1.07304 1.12029 1.27631 1.32150 1.35172 1.41275 1.42831 2.07834 2.23751 2.28551 2.79567 2.81059 3.33763 3.49351 3.70601 3.83019 3.88372 3.94941 4.11139 4.19628 4.27991 4.42374 4.48499 4.53457 4.59749 4.69160 4.71593 4.73024 4.79799 4.89807 4.94155 4.98144 5.01681 5.12933 5.18457 5.22160 5.23411 5.30514 5.32465 5.43279 5.45696 5.74437 5.89243 5.94853 6.15163 6.28395 6.40064 6.56575 6.67162 6.97060 7.12807 7.41340 8.34171 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.003765 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.712504 B = 7434.240761 C = 9083.934687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 C -0.149 4.149 4 N -0.703 5.703 5 C 0.515 3.485 6 O -0.558 6.558 7 C 0.056 3.944 8 H 0.116 0.884 9 C -0.153 4.153 10 O -0.328 6.328 11 C 0.547 3.453 12 O -0.528 6.528 13 C -0.055 4.055 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.084 4.084 17 C -0.151 4.151 18 C -0.131 4.131 19 C -0.088 4.088 20 C 0.067 3.933 21 N -0.259 5.259 22 C -0.356 4.356 23 H 0.104 0.896 24 C 0.026 3.974 25 N -0.851 5.851 26 Si 0.987 3.013 27 H -0.278 1.278 28 H -0.258 1.258 29 H -0.260 1.260 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.418 0.582 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 11.853 4.823 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.206 4.206 4 N -0.359 5.359 5 C 0.300 3.700 6 O -0.435 6.435 7 C -0.002 4.002 8 H 0.133 0.867 9 C -0.210 4.210 10 O -0.243 6.243 11 C 0.396 3.604 12 O -0.420 6.420 13 C -0.167 4.167 14 C -0.185 4.185 15 C -0.157 4.157 16 C -0.103 4.103 17 C -0.169 4.169 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.049 4.049 21 N 0.079 4.921 22 C -0.484 4.484 23 H 0.122 0.878 24 C -0.184 4.184 25 N -0.481 5.481 26 Si 0.808 3.192 27 H -0.203 1.203 28 H -0.182 1.182 29 H -0.184 1.184 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.156 0.844 45 H 0.113 0.887 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.380 11.686 3.932 13.085 hybrid contribution -0.335 0.524 -0.606 0.868 sum -4.715 12.210 3.326 13.505 Atomic orbital electron populations 1.22152 0.94468 1.01249 1.03837 1.21107 0.94886 0.94262 0.87129 1.22019 1.01698 0.92280 1.04651 1.45832 1.67193 1.04741 1.18118 1.20353 0.77760 0.83606 0.88241 1.90791 1.49881 1.66985 1.35868 1.22788 1.02675 0.79879 0.94853 0.86683 1.22136 0.97340 1.05754 0.95796 1.86973 1.53115 1.24360 1.59834 1.19970 0.76055 0.85801 0.78598 1.90728 1.52433 1.67793 1.31016 1.19600 1.06584 0.90734 0.99801 1.20611 1.02535 0.92572 1.02818 1.18358 1.03437 0.95984 0.97879 1.20503 0.98859 0.90653 1.00282 1.20789 1.00938 0.99160 0.96054 1.21040 0.98177 0.96720 0.99192 1.20159 1.01463 0.91497 0.97693 1.18711 1.01197 0.86236 0.98726 1.40303 1.27937 1.06271 1.17636 1.19961 1.06635 1.34529 0.87275 0.87819 1.26338 0.99254 0.93668 0.99131 1.70017 1.23168 1.37729 1.17200 0.85035 0.78243 0.78303 0.77612 1.20345 1.18185 1.18395 0.90061 0.95220 0.90255 0.92621 0.92041 0.89591 0.89730 0.74381 0.86124 0.91891 0.91000 0.82657 0.84094 0.83153 0.84372 0.88654 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.48 71.98 0.68 -2.25 16 2 C 0.13 2.61 3.18 45.00 0.14 2.76 16 3 C -0.15 -1.72 9.38 71.98 0.68 -1.05 16 4 N -0.70 -15.18 5.06 -442.54 -2.24 -17.42 16 5 C 0.52 17.18 7.13 87.66 0.62 17.81 16 6 O -0.56 -25.27 16.18 15.66 0.25 -25.01 16 7 C 0.06 1.87 2.92 29.85 0.09 1.96 16 8 H 0.12 3.48 7.29 -2.39 -0.02 3.46 16 9 C -0.15 -3.77 9.50 71.98 0.68 -3.09 16 10 O -0.33 -15.04 7.20 -51.42 -0.37 -15.41 16 11 C 0.55 26.20 7.85 70.03 0.55 26.74 16 12 O -0.53 -23.83 16.18 19.54 0.32 -23.52 16 13 C -0.05 -2.87 6.76 39.87 0.27 -2.60 16 14 C -0.16 -7.49 10.55 22.64 0.24 -7.25 16 15 C -0.15 -7.25 6.16 -21.34 -0.13 -7.38 16 16 C -0.08 -3.24 10.06 22.32 0.22 -3.01 16 17 C -0.15 -5.28 9.97 22.03 0.22 -5.06 16 18 C -0.13 -5.13 10.02 22.33 0.22 -4.91 16 19 C -0.09 -4.30 8.63 22.38 0.19 -4.11 16 20 C 0.07 3.55 6.06 39.07 0.24 3.79 16 21 N -0.26 -14.52 2.81 -331.42 -0.93 -15.45 16 22 C -0.36 -20.38 8.74 84.09 0.73 -19.65 16 23 H 0.10 6.07 6.80 -2.91 -0.02 6.05 16 24 C 0.03 1.41 4.48 84.95 0.38 1.79 16 25 N -0.85 -47.65 11.16 21.67 0.24 -47.41 16 26 Si 0.99 44.34 29.59 68.60 2.03 46.37 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 29 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.42 5.55 8.54 -92.71 -0.79 4.76 16 38 H 0.12 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.16 6.44 8.06 -2.91 -0.02 6.41 16 42 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 44 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 45 H 0.10 4.88 6.67 -2.91 -0.02 4.86 16 46 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -77.66 391.02 5.55 -72.11 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.21 Total: 31.25 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 6.04 Total: -5.51 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.93 Total: -80.27 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: 0.20 Total: -63.94 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -77.66 5.55 -72.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729768891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.162 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds