Wall clock time and date at job start Wed Apr 1 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46879 * 2 1 4 4 O 1.45205 * 109.46759 * 179.97438 * 3 2 1 5 5 C 1.34235 * 116.99819 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99910 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47179 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47224 * 184.86569 * 8 7 5 10 10 C 1.34776 * 119.99605 * 175.28745 * 9 8 7 11 11 O 1.21663 * 120.00521 * 4.53714 * 10 9 8 12 12 C 1.46889 * 119.99611 * 184.53929 * 10 9 8 13 13 C 1.36122 * 125.43857 * 173.89198 * 12 10 9 14 14 C 1.41698 * 107.75480 * 179.87859 * 13 12 10 15 15 C 1.40015 * 133.35636 * 180.14829 * 14 13 12 16 16 C 1.36583 * 119.83399 * 180.27248 * 15 14 13 17 17 C 1.38850 * 120.59662 * 0.02562 * 16 15 14 18 18 C 1.37845 * 120.63641 * 359.96786 * 17 16 15 19 19 C 1.39085 * 119.81135 * 0.02776 * 18 17 16 20 20 N 1.37843 * 133.15837 * 180.02562 * 19 18 17 21 21 C 1.36886 * 125.62231 * 0.02562 * 20 19 18 22 22 H 1.08005 * 119.99834 * 132.80772 * 21 20 19 23 23 C 1.39008 * 120.00271 * 312.81505 * 21 20 19 24 24 N 1.31350 * 119.99699 * 3.67668 * 23 21 20 25 25 Si 1.86802 * 120.00183 * 183.68374 * 23 21 20 26 26 H 1.48496 * 109.47288 * 94.99213 * 25 23 21 27 27 H 1.48501 * 109.47034 * 214.99178 * 25 23 21 28 28 H 1.48500 * 109.46896 * 334.99366 * 25 23 21 29 29 H 1.08996 * 109.47343 * 300.00002 * 1 2 3 30 30 H 1.09005 * 109.46956 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46894 * 239.99708 * 2 1 3 33 33 H 1.09005 * 109.46956 * 119.99835 * 2 1 3 34 34 H 1.08996 * 109.47135 * 59.99871 * 3 2 1 35 35 H 1.08997 * 109.47381 * 300.00006 * 3 2 1 36 36 H 1.08996 * 109.47350 * 59.99843 * 7 5 4 37 37 H 1.09007 * 109.46789 * 299.99974 * 7 5 4 38 38 H 1.09007 * 109.46853 * 64.86441 * 8 7 5 39 39 H 1.08999 * 109.47163 * 304.86951 * 8 7 5 40 40 H 0.96998 * 120.00327 * 355.01799 * 9 8 7 41 41 H 1.08003 * 126.12189 * 0.02562 * 13 12 10 42 42 H 1.08006 * 120.08469 * 0.26290 * 15 14 13 43 43 H 1.07997 * 119.69864 * 180.02562 * 16 15 14 44 44 H 1.08009 * 119.68237 * 179.97438 * 17 16 15 45 45 H 1.08005 * 120.09280 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99513 * 185.00867 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1014 2.6385 0.0002 6 8 3.4433 3.6518 -0.0003 7 6 5.6063 2.7174 0.0002 8 6 6.0401 4.1846 0.0002 9 7 7.4983 4.2627 -0.1169 10 6 8.1016 5.4622 -0.2334 11 8 7.4447 6.4835 -0.1584 12 6 9.5524 5.5365 -0.4509 13 6 10.2559 6.6748 -0.7002 14 6 11.6192 6.3171 -0.8459 15 6 12.7832 7.0511 -1.1045 16 6 13.9851 6.4088 -1.1964 17 6 14.0647 5.0318 -1.0363 18 6 12.9327 4.2878 -0.7809 19 6 11.6975 4.9196 -0.6828 20 7 10.4203 4.4607 -0.4418 21 6 10.0694 3.1551 -0.2272 22 1 9.4198 2.8990 0.5968 23 6 10.5492 2.1589 -1.0696 24 7 11.3962 2.4603 -2.0272 25 14 9.9891 0.3917 -0.8400 26 1 8.8451 0.1134 -1.7449 27 1 11.1096 -0.5284 -1.1613 28 1 9.5674 0.1852 0.5688 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8899 36 1 5.9961 2.2229 -0.8896 37 1 5.9960 2.2236 0.8904 38 1 5.7245 4.6567 0.9307 39 1 5.5797 4.6996 -0.8429 40 1 8.0299 3.4514 -0.1067 41 1 9.8482 7.6724 -0.7717 42 1 12.7309 8.1224 -1.2310 43 1 14.8816 6.9771 -1.3955 44 1 15.0227 4.5390 -1.1124 45 1 13.0048 3.2172 -0.6575 46 1 11.6749 1.7800 -2.6600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730237513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:12 Heat of formation + Delta-G solvation = -75.840941 kcal Electronic energy + Delta-G solvation = -29300.999986 eV Core-core repulsion = 25155.768791 eV Total energy + Delta-G solvation = -4145.231195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67999 -40.45541 -38.55860 -37.04110 -35.91880 -34.88828 -34.18450 -33.63505 -31.18533 -30.66425 -28.98169 -28.07531 -27.09468 -25.12517 -24.54781 -22.40691 -21.87577 -21.01105 -20.84320 -20.08607 -19.29904 -18.16525 -17.81166 -17.06745 -16.75445 -16.12663 -15.70523 -15.55229 -15.21974 -14.89520 -14.72583 -14.54596 -13.96917 -13.89159 -13.79106 -13.21189 -13.06990 -12.88878 -12.88228 -12.74034 -12.57077 -12.45539 -11.97740 -11.90430 -11.71004 -11.61192 -11.53121 -11.49108 -11.45504 -11.16894 -10.79126 -10.73107 -10.67172 -10.61637 -10.20314 -9.76373 -9.45123 -9.33128 -8.65318 -8.55904 -7.21998 -6.87729 -6.59741 -4.78785 1.84564 2.07489 2.37761 2.73676 2.85651 2.89751 2.91831 3.14226 3.61869 3.80115 4.22588 4.41270 4.51392 4.53033 4.56984 4.58615 4.76778 4.92597 4.95626 5.06462 5.08073 5.22828 5.23606 5.37952 5.55678 5.66622 5.67042 5.78006 5.86096 5.90646 5.98517 6.07470 6.18261 6.27186 6.43604 6.60533 6.70110 6.76690 6.90632 6.94081 7.11188 7.14788 7.45034 7.58624 7.60353 7.66563 7.90641 7.93720 8.15656 8.28694 8.62375 8.92293 9.23358 10.06886 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002672 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.374723 B =10475.208741 C =12155.110485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.065 3.935 4 O -0.359 6.359 5 C 0.470 3.530 6 O -0.503 6.503 7 C -0.130 4.130 8 C 0.131 3.869 9 N -0.732 5.732 10 C 0.598 3.402 11 O -0.554 6.554 12 C -0.018 4.018 13 C -0.161 4.161 14 C -0.136 4.136 15 C -0.089 4.089 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.047 4.047 19 C 0.110 3.890 20 N -0.266 5.266 21 C -0.376 4.376 22 H 0.106 0.894 23 C 0.059 3.941 24 N -0.817 5.817 25 Si 0.921 3.079 26 H -0.266 1.266 27 H -0.272 1.272 28 H -0.259 1.259 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -7.515 2.550 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.009 4.009 4 O -0.276 6.276 5 C 0.312 3.688 6 O -0.390 6.390 7 C -0.168 4.168 8 C 0.007 3.993 9 N -0.393 5.393 10 C 0.388 3.612 11 O -0.432 6.432 12 C -0.133 4.133 13 C -0.189 4.189 14 C -0.141 4.141 15 C -0.107 4.107 16 C -0.178 4.178 17 C -0.171 4.171 18 C -0.066 4.066 19 C -0.004 4.004 20 N 0.069 4.931 21 C -0.504 4.504 22 H 0.124 0.876 23 C -0.155 4.155 24 N -0.446 5.446 25 Si 0.744 3.256 26 H -0.191 1.191 27 H -0.197 1.197 28 H -0.183 1.183 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.138 0.862 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.079 -7.019 2.511 13.353 hybrid contribution -0.070 -1.278 -0.203 1.296 sum -11.149 -8.297 2.308 14.088 Atomic orbital electron populations 1.21694 0.94162 1.02537 1.02366 1.21524 0.96123 0.94743 1.03848 1.23141 0.76422 0.98596 1.02763 1.86494 1.23393 1.33550 1.84133 1.23462 0.91710 0.81261 0.72324 1.90702 1.67177 1.36212 1.44933 1.21570 0.87987 1.00165 1.07051 1.20942 0.81923 0.92904 1.03566 1.46616 1.06635 1.10724 1.75332 1.17229 0.85774 0.82886 0.75322 1.90737 1.65491 1.34882 1.52139 1.20072 0.89361 0.89191 1.14633 1.20411 0.91646 0.96705 1.10167 1.18058 0.93402 0.93180 1.09457 1.20045 0.91347 0.97919 1.01439 1.20274 0.96555 0.94618 1.06377 1.20595 0.97060 0.93849 1.05606 1.20169 0.89231 0.99158 0.98088 1.18312 0.86205 0.91398 1.04532 1.39913 1.02718 1.04452 1.45999 1.19520 1.34706 0.80483 1.15643 0.87639 1.25740 0.94153 1.01131 0.94435 1.69952 1.25204 1.36174 1.13243 0.85979 0.79401 0.80369 0.79811 1.19141 1.19691 1.18324 0.92294 0.92286 0.91650 0.90693 0.90710 0.91141 0.91125 0.86608 0.86766 0.90991 0.90578 0.73883 0.84968 0.87811 0.87995 0.87756 0.86174 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.88 6.31 -26.73 -0.17 -1.05 16 3 C 0.06 0.61 5.47 37.16 0.20 0.81 16 4 O -0.36 -4.18 10.22 -39.27 -0.40 -4.58 16 5 C 0.47 6.15 7.96 36.00 0.29 6.44 16 6 O -0.50 -7.94 15.67 -18.75 -0.29 -8.23 16 7 C -0.13 -1.59 5.93 -27.88 -0.17 -1.75 16 8 C 0.13 2.08 5.02 -4.04 -0.02 2.06 16 9 N -0.73 -13.73 5.49 -61.55 -0.34 -14.06 16 10 C 0.60 13.40 7.77 -12.76 -0.10 13.31 16 11 O -0.55 -13.36 16.85 5.22 0.09 -13.27 16 12 C -0.02 -0.43 6.77 -82.25 -0.56 -0.99 16 13 C -0.16 -3.77 10.55 -39.02 -0.41 -4.18 16 14 C -0.14 -3.19 6.16 -106.90 -0.66 -3.85 16 15 C -0.09 -1.81 10.06 -39.51 -0.40 -2.21 16 16 C -0.16 -3.05 9.97 -39.95 -0.40 -3.45 16 17 C -0.15 -3.03 10.02 -39.50 -0.40 -3.42 16 18 C -0.05 -1.07 8.47 -39.41 -0.33 -1.41 16 19 C 0.11 2.71 6.04 -83.83 -0.51 2.20 16 20 N -0.27 -6.48 2.83 -56.08 -0.16 -6.64 16 21 C -0.38 -8.54 7.63 -15.01 -0.11 -8.66 16 22 H 0.11 2.20 6.47 -52.48 -0.34 1.86 16 23 C 0.06 1.31 5.14 -17.47 -0.09 1.22 16 24 N -0.82 -19.37 10.14 55.50 0.56 -18.81 16 25 Si 0.92 16.30 29.56 -169.99 -5.02 11.28 16 26 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 27 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 28 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 40 H 0.42 7.61 4.34 -40.82 -0.18 7.43 16 41 H 0.13 2.86 8.06 -52.48 -0.42 2.44 16 42 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.12 2.81 6.58 -52.48 -0.35 2.46 16 46 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -29.37 388.57 -9.50 -38.87 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.33 Total: 15.00 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.46 Total: -5.41 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.07 Total: -39.51 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.61 Total: -26.08 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.02 Total: 11.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.37 -9.50 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730237513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.970 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds