Wall clock time and date at job start Wed Apr 1 2020 02:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46879 * 2 1 4 4 O 1.45205 * 109.46759 * 179.97438 * 3 2 1 5 5 C 1.34235 * 116.99819 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99910 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47179 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47224 * 184.86569 * 8 7 5 10 10 C 1.34776 * 119.99605 * 175.28745 * 9 8 7 11 11 O 1.21663 * 120.00521 * 4.53714 * 10 9 8 12 12 C 1.46889 * 119.99611 * 184.53929 * 10 9 8 13 13 C 1.36122 * 125.43857 * 173.89198 * 12 10 9 14 14 C 1.41698 * 107.75480 * 179.87859 * 13 12 10 15 15 C 1.40015 * 133.35636 * 180.14829 * 14 13 12 16 16 C 1.36583 * 119.83399 * 180.27248 * 15 14 13 17 17 C 1.38850 * 120.59662 * 0.02562 * 16 15 14 18 18 C 1.37845 * 120.63641 * 359.96786 * 17 16 15 19 19 C 1.39085 * 119.81135 * 0.02776 * 18 17 16 20 20 N 1.37843 * 133.15837 * 180.02562 * 19 18 17 21 21 C 1.36886 * 125.62231 * 0.02562 * 20 19 18 22 22 H 1.08005 * 119.99834 * 132.80772 * 21 20 19 23 23 C 1.39008 * 120.00271 * 312.81505 * 21 20 19 24 24 N 1.31350 * 119.99699 * 3.67668 * 23 21 20 25 25 Si 1.86802 * 120.00183 * 183.68374 * 23 21 20 26 26 H 1.48496 * 109.47288 * 94.99213 * 25 23 21 27 27 H 1.48501 * 109.47034 * 214.99178 * 25 23 21 28 28 H 1.48500 * 109.46896 * 334.99366 * 25 23 21 29 29 H 1.08996 * 109.47343 * 300.00002 * 1 2 3 30 30 H 1.09005 * 109.46956 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46894 * 239.99708 * 2 1 3 33 33 H 1.09005 * 109.46956 * 119.99835 * 2 1 3 34 34 H 1.08996 * 109.47135 * 59.99871 * 3 2 1 35 35 H 1.08997 * 109.47381 * 300.00006 * 3 2 1 36 36 H 1.08996 * 109.47350 * 59.99843 * 7 5 4 37 37 H 1.09007 * 109.46789 * 299.99974 * 7 5 4 38 38 H 1.09007 * 109.46853 * 64.86441 * 8 7 5 39 39 H 1.08999 * 109.47163 * 304.86951 * 8 7 5 40 40 H 0.96998 * 120.00327 * 355.01799 * 9 8 7 41 41 H 1.08003 * 126.12189 * 0.02562 * 13 12 10 42 42 H 1.08006 * 120.08469 * 0.26290 * 15 14 13 43 43 H 1.07997 * 119.69864 * 180.02562 * 16 15 14 44 44 H 1.08009 * 119.68237 * 179.97438 * 17 16 15 45 45 H 1.08005 * 120.09280 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99513 * 185.00867 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1014 2.6385 0.0002 6 8 3.4433 3.6518 -0.0003 7 6 5.6063 2.7174 0.0002 8 6 6.0401 4.1846 0.0002 9 7 7.4983 4.2627 -0.1169 10 6 8.1016 5.4622 -0.2334 11 8 7.4447 6.4835 -0.1584 12 6 9.5524 5.5365 -0.4509 13 6 10.2559 6.6748 -0.7002 14 6 11.6192 6.3171 -0.8459 15 6 12.7832 7.0511 -1.1045 16 6 13.9851 6.4088 -1.1964 17 6 14.0647 5.0318 -1.0363 18 6 12.9327 4.2878 -0.7809 19 6 11.6975 4.9196 -0.6828 20 7 10.4203 4.4607 -0.4418 21 6 10.0694 3.1551 -0.2272 22 1 9.4198 2.8990 0.5968 23 6 10.5492 2.1589 -1.0696 24 7 11.3962 2.4603 -2.0272 25 14 9.9891 0.3917 -0.8400 26 1 8.8451 0.1134 -1.7449 27 1 11.1096 -0.5284 -1.1613 28 1 9.5674 0.1852 0.5688 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8899 36 1 5.9961 2.2229 -0.8896 37 1 5.9960 2.2236 0.8904 38 1 5.7245 4.6567 0.9307 39 1 5.5797 4.6996 -0.8429 40 1 8.0299 3.4514 -0.1067 41 1 9.8482 7.6724 -0.7717 42 1 12.7309 8.1224 -1.2310 43 1 14.8816 6.9771 -1.3955 44 1 15.0227 4.5390 -1.1124 45 1 13.0048 3.2172 -0.6575 46 1 11.6749 1.7800 -2.6600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730237513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:11 Heat of formation + Delta-G solvation = -90.464152 kcal Electronic energy + Delta-G solvation = -29301.634096 eV Core-core repulsion = 25155.768791 eV Total energy + Delta-G solvation = -4145.865305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21876 -41.65654 -40.21835 -38.04053 -37.57497 -36.37497 -35.31756 -34.81776 -32.60795 -32.27013 -30.61617 -29.69584 -27.89967 -26.82585 -25.85817 -23.87421 -22.69589 -22.50958 -21.96803 -21.73843 -20.95671 -19.82805 -18.87861 -18.21649 -18.00933 -17.40306 -17.28835 -16.73329 -16.66562 -16.42843 -16.13040 -15.91259 -15.39137 -15.26406 -14.78297 -14.69935 -14.59893 -14.53523 -14.19346 -13.75453 -13.63644 -13.56401 -13.37388 -13.21205 -13.11874 -13.01848 -12.65362 -12.63901 -12.29790 -12.17322 -12.11773 -12.10258 -11.85592 -11.68725 -11.48937 -11.41525 -11.20304 -10.97585 -10.35763 -10.15686 -8.91253 -8.58754 -8.29478 -6.53227 0.13378 1.04932 1.14406 1.37865 1.41044 1.43311 1.46627 1.57079 2.12134 2.34230 2.51112 2.83334 2.88021 3.38848 3.43392 3.74142 3.87643 3.92927 3.93783 4.04756 4.25073 4.26560 4.34383 4.46466 4.49608 4.56509 4.57063 4.68554 4.73209 4.77439 4.79459 4.90579 5.04083 5.08333 5.08868 5.14799 5.22344 5.24162 5.37280 5.40643 5.42921 5.48805 5.76986 5.94101 6.00811 6.22620 6.26272 6.52657 6.60134 6.60465 6.91575 7.22778 7.51004 8.41729 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002672 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.374723 B =10475.208741 C =12155.110485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.057 3.943 4 O -0.356 6.356 5 C 0.476 3.524 6 O -0.536 6.536 7 C -0.122 4.122 8 C 0.131 3.869 9 N -0.718 5.718 10 C 0.594 3.406 11 O -0.581 6.581 12 C -0.043 4.043 13 C -0.177 4.177 14 C -0.158 4.158 15 C -0.096 4.096 16 C -0.152 4.152 17 C -0.142 4.142 18 C -0.072 4.072 19 C 0.078 3.922 20 N -0.275 5.275 21 C -0.395 4.395 22 H 0.120 0.880 23 C 0.022 3.978 24 N -0.852 5.852 25 Si 0.989 3.011 26 H -0.255 1.255 27 H -0.278 1.278 28 H -0.242 1.242 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.419 0.581 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.107 0.893 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 -9.272 2.759 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.016 4.016 4 O -0.273 6.273 5 C 0.320 3.680 6 O -0.426 6.426 7 C -0.159 4.159 8 C 0.008 3.992 9 N -0.377 5.377 10 C 0.383 3.617 11 O -0.462 6.462 12 C -0.158 4.158 13 C -0.206 4.206 14 C -0.163 4.163 15 C -0.115 4.115 16 C -0.171 4.171 17 C -0.162 4.162 18 C -0.092 4.092 19 C -0.036 4.036 20 N 0.060 4.940 21 C -0.522 4.522 22 H 0.137 0.863 23 C -0.188 4.188 24 N -0.481 5.481 25 Si 0.808 3.192 26 H -0.179 1.179 27 H -0.204 1.204 28 H -0.165 1.165 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.265 0.735 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.125 0.875 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.835 -8.805 2.732 14.226 hybrid contribution -0.073 -0.708 -0.287 0.767 sum -10.907 -9.513 2.445 14.678 Atomic orbital electron populations 1.21703 0.92950 1.03413 1.02532 1.21539 0.97044 0.92944 1.04157 1.23414 0.75162 1.00378 1.02687 1.86487 1.24687 1.32498 1.83599 1.23517 0.91881 0.81196 0.71395 1.90698 1.67912 1.37342 1.46647 1.21509 0.87648 0.97593 1.09173 1.20995 0.79865 0.95660 1.02722 1.46506 1.07908 1.09611 1.73702 1.17203 0.85426 0.83581 0.75453 1.90703 1.65844 1.35869 1.53778 1.20401 0.90238 0.89620 1.15532 1.20628 0.92145 0.97089 1.10704 1.18438 0.94293 0.93332 1.10234 1.20442 0.90865 0.99357 1.00797 1.20726 0.97577 0.94402 1.04358 1.21023 0.97382 0.94529 1.03296 1.20230 0.89849 0.98853 1.00278 1.18769 0.86838 0.92324 1.05667 1.40151 1.02846 1.05012 1.46012 1.20003 1.35327 0.80342 1.16503 0.86323 1.26675 0.93578 1.04984 0.93568 1.70076 1.26273 1.37562 1.14139 0.84984 0.78907 0.74550 0.80804 1.17939 1.20357 1.16468 0.92079 0.92237 0.90401 0.90493 0.90264 0.91139 0.91411 0.85055 0.83979 0.91343 0.92091 0.73455 0.84278 0.85122 0.83819 0.84704 0.87516 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.48 6.31 30.59 0.19 -1.28 16 3 C 0.06 1.01 5.47 71.98 0.39 1.41 16 4 O -0.36 -7.72 10.22 -51.47 -0.53 -8.25 16 5 C 0.48 11.94 7.96 71.23 0.57 12.51 16 6 O -0.54 -16.87 15.67 21.97 0.34 -16.53 16 7 C -0.12 -2.76 5.93 29.85 0.18 -2.59 16 8 C 0.13 4.14 5.02 86.38 0.43 4.58 16 9 N -0.72 -27.04 5.49 -466.89 -2.56 -29.60 16 10 C 0.59 27.39 7.77 86.51 0.67 28.06 16 11 O -0.58 -28.97 16.85 -4.23 -0.07 -29.04 16 12 C -0.04 -2.14 6.77 39.91 0.27 -1.87 16 13 C -0.18 -8.57 10.55 22.63 0.24 -8.33 16 14 C -0.16 -7.53 6.16 -21.34 -0.13 -7.66 16 15 C -0.10 -3.80 10.06 22.31 0.22 -3.57 16 16 C -0.15 -5.42 9.97 22.03 0.22 -5.20 16 17 C -0.14 -5.48 10.02 22.32 0.22 -5.25 16 18 C -0.07 -3.34 8.47 22.38 0.19 -3.15 16 19 C 0.08 3.94 6.04 39.06 0.24 4.17 16 20 N -0.28 -13.75 2.83 -331.34 -0.94 -14.69 16 21 C -0.40 -18.06 7.63 84.09 0.64 -17.42 16 22 H 0.12 4.89 6.47 -2.91 -0.02 4.87 16 23 C 0.02 0.98 5.14 84.95 0.44 1.42 16 24 N -0.85 -40.83 10.14 21.67 0.22 -40.61 16 25 Si 0.99 32.17 29.56 68.60 2.03 34.20 16 26 H -0.26 -7.82 7.11 99.48 0.71 -7.11 16 27 H -0.28 -9.30 7.11 99.48 0.71 -8.59 16 28 H -0.24 -7.14 7.11 99.48 0.71 -6.43 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 35 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 36 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.14 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16 40 H 0.42 15.15 4.34 -92.71 -0.40 14.74 16 41 H 0.14 6.26 8.06 -2.91 -0.02 6.23 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 44 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 45 H 0.11 5.11 6.58 -2.91 -0.02 5.09 16 46 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 Total: -1.00 -65.66 388.57 4.80 -60.86 By element: Atomic # 1 Polarization: 47.90 SS G_CDS: 0.60 Total: 48.50 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.70 Total: -4.85 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.28 Total: -84.89 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.25 Total: -53.82 kcal Atomic # 14 Polarization: 32.17 SS G_CDS: 2.03 Total: 34.20 kcal Total: -65.66 4.80 -60.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730237513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.602 kcal (2) G-P(sol) polarization free energy of solvation -65.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds