Wall clock time and date at job start Wed Apr 1 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35997 * 116.99890 * 2 1 4 4 C 1.37934 * 119.83481 * 2.76116 * 3 2 1 5 5 C 1.39728 * 120.13377 * 179.76419 * 4 3 2 6 6 C 1.47612 * 120.24781 * 180.41968 * 5 4 3 7 7 O 1.21581 * 119.99422 * 136.74760 * 6 5 4 8 8 N 1.34767 * 119.99851 * 316.74830 * 6 5 4 9 9 C 1.46510 * 119.99784 * 176.06621 * 8 6 5 10 10 C 1.50694 * 109.46978 * 89.99892 * 9 8 6 11 11 H 1.08007 * 120.00541 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00144 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00206 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47173 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47357 * 119.99805 * 14 12 10 17 17 H 1.48501 * 109.46907 * 239.99986 * 14 12 10 18 18 C 1.46498 * 120.00398 * 356.06514 * 8 6 5 19 19 C 1.53005 * 109.47150 * 108.40056 * 18 8 6 20 20 C 1.47193 * 109.47218 * 180.28278 * 19 18 8 21 21 N 4.73025 * 39.18480 * 295.19814 * 2 1 3 22 22 C 1.39794 * 119.50640 * 0.69892 * 5 4 3 23 23 C 1.37393 * 119.96049 * 359.74508 * 22 5 4 24 24 C 1.39046 * 120.96848 * 359.61966 * 23 22 5 25 25 O 1.36093 * 111.17679 * 181.03937 * 24 23 22 26 26 C 1.43760 * 109.23431 * 340.60146 * 25 24 23 27 27 H 1.09001 * 110.74404 * 269.65035 * 26 25 24 28 28 C 1.53002 * 110.90537 * 146.37604 * 26 25 24 29 29 C 1.51688 * 132.01306 * 179.10050 * 23 22 5 30 30 H 1.09002 * 109.47516 * 176.93844 * 1 2 3 31 31 H 1.09001 * 109.47230 * 296.94089 * 1 2 3 32 32 H 1.09005 * 109.47360 * 56.94171 * 1 2 3 33 33 H 1.07998 * 119.93029 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.47129 * 209.99891 * 9 8 6 35 35 H 1.08992 * 109.46902 * 330.00214 * 9 8 6 36 36 H 0.97002 * 120.00406 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47191 * 228.39954 * 18 8 6 38 38 H 1.09000 * 109.47353 * 348.40133 * 18 8 6 39 39 H 1.09004 * 109.47040 * 300.28584 * 19 18 8 40 40 H 1.09002 * 109.46824 * 60.28442 * 19 18 8 41 41 H 1.07998 * 120.01992 * 179.72525 * 22 5 4 42 42 H 1.09002 * 109.46408 * 306.53438 * 28 26 25 43 43 H 1.08997 * 109.47183 * 66.53478 * 28 26 25 44 44 H 1.08997 * 109.46880 * 186.54393 * 28 26 25 45 45 H 1.08995 * 110.93606 * 313.78827 * 29 23 22 46 46 H 1.08994 * 110.93616 * 77.43415 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3658 0.0576 5 6 1.9211 3.6139 0.0630 6 6 1.1177 4.8503 0.1339 7 8 1.4626 5.7580 0.8655 8 7 0.0021 4.9727 -0.6122 9 6 -0.8418 6.1627 -0.4782 10 6 -0.3798 7.2182 -1.4495 11 1 0.4584 7.0221 -2.1018 12 6 -1.0270 8.4343 -1.5055 13 7 -2.0480 8.6730 -0.7116 14 14 -0.4547 9.7423 -2.7100 15 1 0.7039 9.2293 -3.4843 16 1 -1.5628 10.0777 -3.6401 17 1 -0.0499 10.9601 -1.9628 18 6 -0.3668 3.9158 -1.5573 19 6 -1.5881 3.1616 -1.0277 20 6 -1.9546 2.0953 -1.9740 21 7 -2.2375 1.2724 -2.7043 22 6 3.3156 3.6833 -0.0053 23 6 4.0576 2.5289 -0.0717 24 6 3.4428 1.2817 -0.0643 25 8 4.3625 0.2799 -0.1142 26 6 5.6071 0.8037 -0.6075 27 1 5.6567 0.7226 -1.6934 28 6 6.7950 0.0911 0.0421 29 6 5.5517 2.2866 -0.1706 30 1 -0.3634 -1.0262 -0.0549 31 1 -0.3634 0.4656 0.9161 32 1 -0.3634 0.5606 -0.8613 33 1 0.2157 2.3043 0.1030 34 1 -1.8776 5.8997 -0.6930 35 1 -0.7681 6.5477 0.5388 36 1 -2.5036 9.5285 -0.7513 37 1 -0.6048 4.3597 -2.5239 38 1 0.4669 3.2229 -1.6711 39 1 -1.3517 2.7220 -0.0587 40 1 -2.4233 3.8535 -0.9188 41 1 3.8094 4.6438 -0.0063 42 1 6.6960 0.1349 1.1267 43 1 6.8141 -0.9502 -0.2794 44 1 7.7211 0.5812 -0.2583 45 1 6.0019 2.9319 -0.9248 46 1 6.0338 2.4264 0.7969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742360823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:44 Heat of formation + Delta-G solvation = -37.871711 kcal Electronic energy + Delta-G solvation = -30507.120870 eV Core-core repulsion = 26363.536144 eV Total energy + Delta-G solvation = -4143.584726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49722 -39.78411 -38.94026 -37.03833 -36.43219 -35.37394 -33.15391 -32.94433 -31.30246 -30.95135 -29.95001 -27.70032 -27.64194 -26.35049 -24.23766 -23.90292 -22.16519 -21.94370 -21.64400 -19.13477 -18.12545 -17.81180 -17.41435 -17.10804 -16.47424 -16.41436 -16.01491 -15.73265 -15.30767 -15.02065 -14.87893 -14.41370 -14.30787 -13.81294 -13.78064 -13.53010 -13.31534 -13.17885 -13.00929 -12.77100 -12.69822 -12.44787 -12.32009 -12.23955 -12.20728 -11.81893 -11.67441 -11.54347 -11.36518 -11.32431 -11.21724 -11.02059 -10.93683 -10.71833 -10.61178 -10.22500 -9.73081 -9.21742 -8.64009 -8.50567 -8.01155 -7.86314 -6.12235 -4.16510 0.89379 1.23772 2.63930 2.70981 2.92244 3.11368 3.14530 3.26475 3.34749 3.37363 3.49601 3.72873 4.07684 4.21855 4.29831 4.39917 4.64073 4.67863 4.75473 4.86476 4.87393 4.98402 5.00276 5.06191 5.08111 5.13954 5.22853 5.27136 5.30630 5.34556 5.38444 5.44823 5.58083 5.62213 5.76399 5.76834 5.93900 6.03431 6.14941 6.28237 6.37696 6.72551 6.87220 7.27861 7.29894 7.35818 7.47833 7.83932 8.12133 8.15571 8.75469 8.91298 9.49108 10.96011 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003551 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.579362 B = 7883.245427 C = 9659.005437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.106 3.894 4 C -0.157 4.157 5 C -0.104 4.104 6 C 0.554 3.446 7 O -0.521 6.521 8 N -0.589 5.589 9 C 0.244 3.756 10 C -0.528 4.528 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.107 3.893 19 C -0.057 4.057 20 C 0.212 3.788 21 N -0.435 5.435 22 C -0.053 4.053 23 C -0.144 4.144 24 C 0.091 3.909 25 O -0.292 6.292 26 C 0.074 3.926 27 H 0.087 0.913 28 C -0.149 4.149 29 C -0.104 4.104 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.146 0.854 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 -16.808 1.407 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.060 3.940 4 C -0.176 4.176 5 C -0.107 4.107 6 C 0.340 3.660 7 O -0.397 6.397 8 N -0.319 5.319 9 C 0.126 3.874 10 C -0.566 4.566 11 H 0.078 0.922 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.020 4.020 19 C -0.098 4.098 20 C -0.106 4.106 21 N -0.112 5.112 22 C -0.072 4.072 23 C -0.145 4.145 24 C 0.045 3.955 25 O -0.207 6.207 26 C 0.018 3.982 27 H 0.105 0.895 28 C -0.206 4.206 29 C -0.141 4.141 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.409 -17.806 0.810 20.641 hybrid contribution 0.009 1.379 -0.439 1.447 sum 10.418 -16.427 0.371 19.456 Atomic orbital electron populations 1.23162 0.78493 1.04256 1.01290 1.86164 1.21047 1.25838 1.89271 1.17975 0.87952 0.85148 1.02900 1.21389 1.00522 0.90477 1.05182 1.19841 0.93899 0.93352 1.03637 1.17988 0.80995 0.85898 0.81102 1.90804 1.68874 1.40335 1.39691 1.48124 1.24658 1.20959 1.38209 1.19405 0.88756 0.80252 0.99035 1.21433 1.15824 0.98910 1.20468 0.92200 1.24909 0.94888 0.98172 0.95983 1.69921 1.21116 1.24144 1.38066 0.86458 0.78605 0.81642 0.80826 1.19767 1.20987 1.20862 1.21552 0.95323 0.90535 0.94548 1.20002 1.02537 0.92557 0.94740 1.29037 0.93343 0.94020 0.94217 1.81231 1.08935 1.11365 1.09696 1.20237 0.91662 0.97726 0.97615 1.20473 0.95380 0.92367 1.06242 1.18803 0.87775 0.87534 1.01348 1.86887 1.19998 1.32835 1.80972 1.23397 0.83697 0.92181 0.98877 0.89531 1.21873 0.95635 1.01228 1.01831 1.21898 0.92202 0.96238 1.03756 0.88042 0.92361 0.92956 0.83663 0.94432 0.93394 0.92689 0.89076 0.89575 0.87752 0.85550 0.84453 0.91318 0.91341 0.90240 0.88614 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.11 10.50 -19.75 -0.21 -4.32 16 3 C 0.11 1.46 6.70 -39.05 -0.26 1.20 16 4 C -0.16 -2.11 6.40 -39.14 -0.25 -2.36 16 5 C -0.10 -1.62 4.99 -104.93 -0.52 -2.14 16 6 C 0.55 10.69 7.27 -12.44 -0.09 10.60 16 7 O -0.52 -12.31 16.59 5.29 0.09 -12.22 16 8 N -0.59 -10.91 2.51 -176.26 -0.44 -11.35 16 9 C 0.24 5.64 5.05 -5.19 -0.03 5.61 16 10 C -0.53 -13.86 9.39 -34.44 -0.32 -14.19 16 11 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.11 1.49 4.86 -4.04 -0.02 1.47 16 19 C -0.06 -0.63 5.29 -29.52 -0.16 -0.79 16 20 C 0.21 2.53 13.62 -20.76 -0.28 2.25 16 21 N -0.43 -6.13 18.54 42.15 0.78 -5.35 16 22 C -0.05 -0.77 9.66 -39.31 -0.38 -1.15 16 23 C -0.14 -1.83 6.26 -104.14 -0.65 -2.48 16 24 C 0.09 1.26 6.98 -38.64 -0.27 0.99 16 25 O -0.29 -3.82 10.81 -20.05 -0.22 -4.04 16 26 C 0.07 0.68 4.25 -25.84 -0.11 0.57 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 28 C -0.15 -0.97 9.59 37.16 0.36 -0.61 16 29 C -0.10 -0.95 6.65 -26.50 -0.18 -1.12 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 32 H 0.05 0.52 5.67 -51.93 -0.29 0.23 16 33 H 0.15 1.68 2.43 -52.49 -0.13 1.56 16 34 H 0.04 0.84 7.10 -51.93 -0.37 0.47 16 35 H 0.05 1.27 7.48 -51.93 -0.39 0.88 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.12 4.97 -51.93 -0.26 0.86 16 39 H 0.10 0.95 6.07 -51.93 -0.31 0.63 16 40 H 0.13 1.38 7.22 -51.93 -0.38 1.01 16 41 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.77 7.93 -51.93 -0.41 0.36 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -33.50 383.06 -6.65 -40.15 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.87 Total: -0.99 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.27 Total: 0.68 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.07 Total: -40.98 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.34 Total: -20.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.50 -6.65 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742360823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.280 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds