Wall clock time and date at job start Wed Apr 1 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47398 * 2 1 4 4 O 1.45208 * 109.47119 * 240.00269 * 2 1 3 5 5 C 1.34224 * 116.99965 * 89.99551 * 4 2 1 6 6 O 1.20828 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00187 * 179.72472 * 5 4 2 8 8 C 1.52997 * 109.46909 * 300.00801 * 7 5 4 9 9 C 1.53008 * 109.46662 * 60.00309 * 7 5 4 10 10 C 1.47197 * 109.47555 * 180.02562 * 7 5 4 11 11 N 5.72685 * 104.55143 * 282.93759 * 2 1 3 12 12 C 1.50698 * 109.47714 * 120.00375 * 2 1 3 13 13 O 1.21284 * 120.00287 * 104.12111 * 12 2 1 14 14 N 1.34778 * 119.99790 * 284.13240 * 12 2 1 15 15 C 1.46503 * 120.00105 * 6.59046 * 14 12 2 16 16 C 1.50699 * 109.47255 * 94.70327 * 15 14 12 17 17 H 1.08007 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00475 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99544 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00256 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47363 * 59.99900 * 20 18 16 22 22 H 1.48505 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47194 * 299.99738 * 20 18 16 24 24 C 1.39925 * 120.00245 * 186.59934 * 14 12 2 25 25 C 1.38868 * 120.07157 * 187.03214 * 24 14 12 26 26 C 1.38114 * 119.92577 * 179.76149 * 25 24 14 27 27 C 1.38281 * 120.07402 * 0.48896 * 26 25 24 28 28 C 1.38283 * 120.13955 * 359.76635 * 27 26 25 29 29 C 1.38115 * 120.06848 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47077 * 292.84121 * 1 2 3 31 31 H 1.08993 * 109.47219 * 52.84130 * 1 2 3 32 32 H 1.09004 * 109.47088 * 172.84273 * 1 2 3 33 33 H 1.08997 * 109.47560 * 59.99658 * 8 7 5 34 34 H 1.09004 * 109.47073 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46900 * 299.98766 * 8 7 5 36 36 H 1.08996 * 109.47130 * 60.00068 * 9 7 5 37 37 H 1.08997 * 109.46458 * 180.02562 * 9 7 5 38 38 H 1.09004 * 109.46915 * 300.00105 * 9 7 5 39 39 H 1.08997 * 109.47191 * 214.70400 * 15 14 12 40 40 H 1.09008 * 109.46928 * 334.70205 * 15 14 12 41 41 H 0.97009 * 119.99794 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03852 * 359.97237 * 25 24 14 43 43 H 1.08005 * 119.96504 * 180.25029 * 26 25 24 44 44 H 1.07994 * 119.93415 * 179.74742 * 27 26 25 45 45 H 1.08001 * 119.96435 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.03297 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1857 5 6 2.2170 0.0640 -2.2812 6 8 1.9980 1.2519 -2.2503 7 6 2.7246 -0.5759 -3.5476 8 6 4.0865 -1.2208 -3.2828 9 6 1.7345 -1.6469 -4.0100 10 6 2.8630 0.4497 -4.5944 11 7 2.9688 1.2411 -5.4024 12 6 2.0324 -0.7105 1.2304 13 8 2.4762 -1.8357 1.1422 14 7 1.9884 -0.0954 2.4288 15 6 1.3224 1.2026 2.5620 16 6 -0.1002 0.9934 3.0131 17 1 -0.4709 -0.0066 3.1839 18 6 -0.9284 2.0783 3.2078 19 7 -0.4767 3.2959 3.0002 20 14 -2.6915 1.8189 3.7676 21 1 -2.6971 1.1234 5.0796 22 1 -3.3667 3.1347 3.9025 23 1 -3.4123 0.9925 2.7663 24 6 2.5790 -0.6965 3.5458 25 6 2.4103 -0.1393 4.8066 26 6 2.9905 -0.7379 5.9078 27 6 3.7472 -1.8852 5.7545 28 6 3.9215 -2.4395 4.4998 29 6 3.3395 -1.8488 3.3953 30 1 -0.3633 0.3989 0.9471 31 1 -0.3633 0.6207 -0.8190 32 1 -0.3633 -1.0197 -0.1280 33 1 3.9844 -1.9802 -2.5076 34 1 4.4539 -1.6833 -4.1989 35 1 4.7919 -0.4578 -2.9534 36 1 0.7642 -1.1876 -4.1986 37 1 2.1018 -2.1101 -4.9257 38 1 1.6324 -2.4063 -3.2347 39 1 1.8514 1.8086 3.2976 40 1 1.3269 1.7138 1.5992 41 1 -1.0595 4.0592 3.1368 42 1 1.8232 0.7592 4.9264 43 1 2.8563 -0.3074 6.8891 44 1 4.2032 -2.3491 6.6166 45 1 4.5133 -3.3354 4.3833 46 1 3.4763 -2.2820 2.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744791472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:04 Heat of formation + Delta-G solvation = -49.690931 kcal Electronic energy + Delta-G solvation = -30598.447568 eV Core-core repulsion = 26454.350323 eV Total energy + Delta-G solvation = -4144.097246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12507 -40.22067 -38.13289 -37.39980 -36.29677 -35.49709 -34.82933 -32.88399 -31.75927 -30.37192 -29.10521 -27.82871 -27.54905 -25.20275 -24.31875 -23.53869 -22.73929 -21.77782 -21.05450 -19.27863 -18.42609 -17.47120 -16.89155 -16.67062 -16.49204 -16.24291 -15.97332 -15.40260 -14.89004 -14.63377 -14.32878 -14.25213 -13.90153 -13.73478 -13.56823 -13.17003 -13.05612 -12.96488 -12.87214 -12.69219 -12.54552 -12.37915 -12.33890 -12.19362 -12.00247 -11.92406 -11.71663 -11.60386 -11.26781 -11.14432 -11.11124 -10.87386 -10.70684 -10.51133 -10.45808 -10.40523 -10.16142 -9.32937 -8.89027 -8.71406 -8.39781 -7.31488 -6.38326 -4.47835 1.74268 1.89539 1.94541 1.98974 2.50043 2.80432 2.97863 3.14507 3.20950 3.23840 3.36800 3.55851 4.16570 4.30721 4.41329 4.43817 4.47464 4.73391 4.93723 5.18305 5.20375 5.27017 5.31859 5.34210 5.37229 5.40642 5.47025 5.65469 5.72468 5.78817 5.97558 5.99178 6.06374 6.08068 6.14598 6.41263 6.44702 6.64513 6.77495 6.86915 6.91943 6.97968 7.06182 7.18974 7.22577 7.53306 7.56297 7.70176 7.74711 7.92429 8.46039 8.61943 9.19331 10.67270 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.003998 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.531792 B = 7002.042540 C = 9290.434801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.114 0.886 4 O -0.322 6.322 5 C 0.472 3.528 6 O -0.489 6.489 7 C 0.052 3.948 8 C -0.144 4.144 9 C -0.143 4.143 10 C 0.221 3.779 11 N -0.402 5.402 12 C 0.523 3.477 13 O -0.522 6.522 14 N -0.530 5.530 15 C 0.221 3.779 16 C -0.546 4.546 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.880 5.880 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.169 3.831 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.159 4.159 28 C -0.109 4.109 29 C -0.173 4.173 30 H 0.134 0.866 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.270 0.730 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -10.256 -5.596 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.025 3.975 3 H 0.131 0.869 4 O -0.237 6.237 5 C 0.311 3.689 6 O -0.376 6.376 7 C 0.048 3.952 8 C -0.202 4.202 9 C -0.201 4.201 10 C -0.099 4.099 11 N -0.076 5.076 12 C 0.312 3.688 13 O -0.401 6.401 14 N -0.250 5.250 15 C 0.102 3.898 16 C -0.584 4.584 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.517 5.517 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.074 3.926 25 C -0.159 4.159 26 C -0.124 4.124 27 C -0.178 4.178 28 C -0.128 4.128 29 C -0.192 4.192 30 H 0.152 0.848 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.159 0.841 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.598 -8.986 -6.903 13.112 hybrid contribution -1.207 0.115 0.827 1.468 sum 5.390 -8.871 -6.076 12.028 Atomic orbital electron populations 1.22607 0.90385 1.03253 1.08073 1.22626 0.97407 0.96968 0.80549 0.86869 1.86490 1.76446 1.41380 1.19422 1.22857 0.75100 0.85697 0.85223 1.90769 1.46765 1.16180 1.83849 1.17824 1.01029 0.91260 0.85129 1.21973 0.91532 1.02026 1.04644 1.21966 0.97523 0.96892 1.03735 1.28025 0.94004 0.93683 0.94139 1.81188 1.07603 1.07779 1.10990 1.20026 0.78527 0.85928 0.84298 1.90368 1.45889 1.18197 1.85609 1.45864 1.50895 1.22630 1.05596 1.19873 0.92872 0.77384 0.99628 1.21257 0.95333 0.93785 1.48027 0.91439 1.24933 0.99106 0.94775 0.94511 1.69906 1.36945 0.98172 1.46645 0.86538 0.83643 0.77665 0.79703 1.19821 1.20971 1.19782 1.17987 0.94041 0.93684 0.86871 1.21152 1.01858 1.02335 0.90598 1.20884 0.97656 0.95884 0.97985 1.20997 1.01979 0.97645 0.97172 1.20991 0.99701 0.99522 0.92549 1.22425 0.98407 0.96241 1.02176 0.84810 0.91572 0.91710 0.88329 0.89899 0.91013 0.90940 0.89913 0.88437 0.93366 0.93299 0.91985 0.84105 0.86422 0.87084 0.86694 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 9.28 37.16 0.34 -2.90 16 2 C 0.08 1.44 2.14 -27.89 -0.06 1.38 16 3 H 0.11 2.09 5.81 -51.93 -0.30 1.79 16 4 O -0.32 -4.90 9.27 -45.74 -0.42 -5.32 16 5 C 0.47 6.71 6.51 36.01 0.23 6.94 16 6 O -0.49 -8.66 15.25 -18.75 -0.29 -8.94 16 7 C 0.05 0.53 0.89 -158.44 -0.14 0.39 16 8 C -0.14 -1.10 8.36 37.16 0.31 -0.79 16 9 C -0.14 -1.05 8.36 37.16 0.31 -0.74 16 10 C 0.22 2.78 13.10 -20.76 -0.27 2.51 16 11 N -0.40 -5.98 18.54 42.15 0.78 -5.20 16 12 C 0.52 10.11 6.89 -10.99 -0.08 10.03 16 13 O -0.52 -10.37 13.10 -13.55 -0.18 -10.55 16 14 N -0.53 -10.70 2.69 -114.74 -0.31 -11.01 16 15 C 0.22 4.83 4.03 -5.19 -0.02 4.81 16 16 C -0.55 -12.78 6.30 -34.44 -0.22 -13.00 16 17 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -22.48 13.29 55.43 0.74 -21.74 16 20 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C 0.17 3.32 6.47 -83.69 -0.54 2.78 16 25 C -0.14 -2.60 9.04 -39.39 -0.36 -2.96 16 26 C -0.11 -1.68 10.04 -39.61 -0.40 -2.08 16 27 C -0.16 -2.35 10.04 -39.55 -0.40 -2.75 16 28 C -0.11 -1.69 10.04 -39.61 -0.40 -2.09 16 29 C -0.17 -3.14 8.97 -39.39 -0.35 -3.49 16 30 H 0.13 2.68 4.38 -51.93 -0.23 2.45 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.05 1.11 6.81 -51.93 -0.35 0.76 16 40 H 0.05 1.10 5.65 -51.92 -0.29 0.80 16 41 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.14 2.81 6.16 -52.49 -0.32 2.48 16 43 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.17 3.19 4.73 -55.14 -0.26 2.93 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -28.67 387.81 -6.93 -35.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.95 Total: 7.41 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.13 Total: -0.29 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 1.21 Total: -37.95 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.89 Total: -24.81 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.67 -6.93 -35.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744791472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.089 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds