Wall clock time and date at job start Wed Apr 1 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47398 * 2 1 4 4 O 1.45208 * 109.47119 * 240.00269 * 2 1 3 5 5 C 1.34224 * 116.99965 * 89.99551 * 4 2 1 6 6 O 1.20828 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00187 * 179.72472 * 5 4 2 8 8 C 1.52997 * 109.46909 * 300.00801 * 7 5 4 9 9 C 1.53008 * 109.46662 * 60.00309 * 7 5 4 10 10 C 1.47197 * 109.47555 * 180.02562 * 7 5 4 11 11 N 5.72685 * 104.55143 * 282.93759 * 2 1 3 12 12 C 1.50698 * 109.47714 * 120.00375 * 2 1 3 13 13 O 1.21284 * 120.00287 * 104.12111 * 12 2 1 14 14 N 1.34778 * 119.99790 * 284.13240 * 12 2 1 15 15 C 1.46503 * 120.00105 * 6.59046 * 14 12 2 16 16 C 1.50699 * 109.47255 * 94.70327 * 15 14 12 17 17 H 1.08007 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00475 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99544 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00256 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47363 * 59.99900 * 20 18 16 22 22 H 1.48505 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47194 * 299.99738 * 20 18 16 24 24 C 1.39925 * 120.00245 * 186.59934 * 14 12 2 25 25 C 1.38868 * 120.07157 * 187.03214 * 24 14 12 26 26 C 1.38114 * 119.92577 * 179.76149 * 25 24 14 27 27 C 1.38281 * 120.07402 * 0.48896 * 26 25 24 28 28 C 1.38283 * 120.13955 * 359.76635 * 27 26 25 29 29 C 1.38115 * 120.06848 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47077 * 292.84121 * 1 2 3 31 31 H 1.08993 * 109.47219 * 52.84130 * 1 2 3 32 32 H 1.09004 * 109.47088 * 172.84273 * 1 2 3 33 33 H 1.08997 * 109.47560 * 59.99658 * 8 7 5 34 34 H 1.09004 * 109.47073 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46900 * 299.98766 * 8 7 5 36 36 H 1.08996 * 109.47130 * 60.00068 * 9 7 5 37 37 H 1.08997 * 109.46458 * 180.02562 * 9 7 5 38 38 H 1.09004 * 109.46915 * 300.00105 * 9 7 5 39 39 H 1.08997 * 109.47191 * 214.70400 * 15 14 12 40 40 H 1.09008 * 109.46928 * 334.70205 * 15 14 12 41 41 H 0.97009 * 119.99794 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03852 * 359.97237 * 25 24 14 43 43 H 1.08005 * 119.96504 * 180.25029 * 26 25 24 44 44 H 1.07994 * 119.93415 * 179.74742 * 27 26 25 45 45 H 1.08001 * 119.96435 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.03297 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1857 5 6 2.2170 0.0640 -2.2812 6 8 1.9980 1.2519 -2.2503 7 6 2.7246 -0.5759 -3.5476 8 6 4.0865 -1.2208 -3.2828 9 6 1.7345 -1.6469 -4.0100 10 6 2.8630 0.4497 -4.5944 11 7 2.9688 1.2411 -5.4024 12 6 2.0324 -0.7105 1.2304 13 8 2.4762 -1.8357 1.1422 14 7 1.9884 -0.0954 2.4288 15 6 1.3224 1.2026 2.5620 16 6 -0.1002 0.9934 3.0131 17 1 -0.4709 -0.0066 3.1839 18 6 -0.9284 2.0783 3.2078 19 7 -0.4767 3.2959 3.0002 20 14 -2.6915 1.8189 3.7676 21 1 -2.6971 1.1234 5.0796 22 1 -3.3667 3.1347 3.9025 23 1 -3.4123 0.9925 2.7663 24 6 2.5790 -0.6965 3.5458 25 6 2.4103 -0.1393 4.8066 26 6 2.9905 -0.7379 5.9078 27 6 3.7472 -1.8852 5.7545 28 6 3.9215 -2.4395 4.4998 29 6 3.3395 -1.8488 3.3953 30 1 -0.3633 0.3989 0.9471 31 1 -0.3633 0.6207 -0.8190 32 1 -0.3633 -1.0197 -0.1280 33 1 3.9844 -1.9802 -2.5076 34 1 4.4539 -1.6833 -4.1989 35 1 4.7919 -0.4578 -2.9534 36 1 0.7642 -1.1876 -4.1986 37 1 2.1018 -2.1101 -4.9257 38 1 1.6324 -2.4063 -3.2347 39 1 1.8514 1.8086 3.2976 40 1 1.3269 1.7138 1.5992 41 1 -1.0595 4.0592 3.1368 42 1 1.8232 0.7592 4.9264 43 1 2.8563 -0.3074 6.8891 44 1 4.2032 -2.3491 6.6166 45 1 4.5133 -3.3354 4.3833 46 1 3.4763 -2.2820 2.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744791472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:03 Heat of formation + Delta-G solvation = -62.753827 kcal Electronic energy + Delta-G solvation = -30599.014018 eV Core-core repulsion = 26454.350323 eV Total energy + Delta-G solvation = -4144.663695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42712 -41.61359 -39.42245 -38.54087 -37.57329 -37.08985 -35.77558 -34.68661 -33.16188 -31.70923 -30.53825 -29.27899 -28.41876 -26.36986 -25.48453 -25.26669 -23.99820 -23.10035 -22.37441 -20.72251 -19.62223 -18.89527 -18.47975 -18.19258 -17.91589 -17.46217 -17.12668 -16.69253 -16.45262 -16.13321 -15.68032 -15.34121 -15.09829 -14.85808 -14.74132 -14.57562 -14.49750 -14.28023 -14.04749 -13.99159 -13.70635 -13.53032 -13.40578 -13.34536 -13.24386 -13.00171 -12.89772 -12.74935 -12.69020 -12.60812 -12.40436 -12.32608 -12.24621 -12.03428 -11.93418 -11.78462 -11.59406 -10.94331 -10.66333 -10.30444 -9.72466 -8.79362 -8.24848 -6.40136 0.38266 0.61636 0.71717 0.84347 1.42585 1.43068 1.48871 1.49779 1.54137 1.64926 2.17525 2.38324 2.45871 3.03833 3.07229 3.18691 3.32435 3.59395 3.68703 3.74765 3.88528 4.15892 4.23735 4.43715 4.54716 4.59033 4.65110 4.68395 4.69468 4.71737 4.72194 4.76158 4.82770 4.94843 5.04057 5.11309 5.20028 5.23589 5.28683 5.34088 5.46154 5.62944 5.65126 5.72187 5.79724 5.90228 6.21331 6.29869 6.34076 6.38670 6.68626 6.97145 7.29434 8.79018 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.003998 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.531792 B = 7002.042540 C = 9290.434801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.099 0.901 4 O -0.314 6.314 5 C 0.471 3.529 6 O -0.529 6.529 7 C 0.061 3.939 8 C -0.143 4.143 9 C -0.142 4.142 10 C 0.238 3.762 11 N -0.445 5.445 12 C 0.521 3.479 13 O -0.528 6.528 14 N -0.535 5.535 15 C 0.238 3.762 16 C -0.537 4.537 17 H 0.059 0.941 18 C 0.033 3.967 19 N -0.912 5.912 20 Si 0.951 3.049 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.138 3.862 25 C -0.160 4.160 26 C -0.104 4.104 27 C -0.147 4.147 28 C -0.104 4.104 29 C -0.186 4.186 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.030 0.970 40 H 0.039 0.961 41 H 0.270 0.730 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.148 0.852 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 -13.127 -5.135 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.029 3.971 3 H 0.116 0.884 4 O -0.229 6.229 5 C 0.313 3.687 6 O -0.418 6.418 7 C 0.056 3.944 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.080 4.080 11 N -0.119 5.119 12 C 0.310 3.690 13 O -0.407 6.407 14 N -0.255 5.255 15 C 0.118 3.882 16 C -0.575 4.575 17 H 0.077 0.923 18 C -0.169 4.169 19 N -0.550 5.550 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.191 1.191 24 C 0.044 3.956 25 C -0.181 4.181 26 C -0.122 4.122 27 C -0.166 4.166 28 C -0.122 4.122 29 C -0.205 4.205 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.166 0.834 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.271 -11.891 -6.439 15.353 hybrid contribution -1.311 0.939 0.744 1.776 sum 5.960 -10.952 -5.694 13.708 Atomic orbital electron populations 1.22460 0.90238 1.04078 1.06737 1.22372 0.97445 0.96192 0.81098 0.88366 1.86507 1.76356 1.40962 1.19030 1.23777 0.73798 0.85331 0.85777 1.90763 1.48578 1.18028 1.84401 1.18115 1.03267 0.90936 0.82097 1.22090 0.89501 1.01837 1.06607 1.22098 0.96436 0.95941 1.05506 1.28453 0.92624 0.93199 0.93743 1.81200 1.09241 1.08823 1.12658 1.20224 0.78388 0.85963 0.84426 1.90356 1.46247 1.18321 1.85761 1.45788 1.51176 1.22101 1.06469 1.19488 0.92223 0.78179 0.98278 1.21297 0.95922 0.93198 1.47121 0.92321 1.25548 1.02203 0.94501 0.94688 1.70000 1.38066 0.98792 1.48163 0.85703 0.79943 0.77471 0.79299 1.19683 1.20949 1.19143 1.18299 0.95522 0.94911 0.86898 1.21122 1.03126 1.02282 0.91555 1.21226 0.96797 0.96106 0.98101 1.21435 1.00394 0.96523 0.98202 1.21391 0.98768 1.00079 0.91947 1.22441 0.99062 0.96064 1.02980 0.87365 0.91070 0.90165 0.87482 0.86642 0.91866 0.91467 0.86784 0.87284 0.95184 0.94329 0.92085 0.86468 0.83913 0.83081 0.83383 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.33 9.28 71.98 0.67 -5.66 16 2 C 0.09 3.14 2.14 29.85 0.06 3.21 16 3 H 0.10 3.86 5.81 -2.39 -0.01 3.84 16 4 O -0.31 -9.46 9.27 -45.15 -0.42 -9.88 16 5 C 0.47 13.33 6.51 71.24 0.46 13.80 16 6 O -0.53 -19.27 15.25 21.96 0.33 -18.94 16 7 C 0.06 1.14 0.89 -54.73 -0.05 1.10 16 8 C -0.14 -1.84 8.36 71.98 0.60 -1.24 16 9 C -0.14 -1.70 8.36 71.98 0.60 -1.10 16 10 C 0.24 5.84 13.10 89.44 1.17 7.01 16 11 N -0.44 -13.21 18.54 20.00 0.37 -12.84 16 12 C 0.52 20.58 6.89 87.66 0.60 21.18 16 13 O -0.53 -20.97 13.10 15.23 0.20 -20.77 16 14 N -0.53 -22.45 2.69 -635.30 -1.71 -24.15 16 15 C 0.24 10.97 4.03 85.63 0.34 11.32 16 16 C -0.54 -26.06 6.30 25.60 0.16 -25.90 16 17 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.03 1.62 5.46 84.65 0.46 2.08 16 19 N -0.91 -48.14 13.29 21.45 0.28 -47.86 16 20 Si 0.95 39.82 29.54 68.60 2.03 41.85 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 C 0.14 5.50 6.47 38.15 0.25 5.75 16 25 C -0.16 -6.08 9.04 22.39 0.20 -5.88 16 26 C -0.10 -3.11 10.04 22.25 0.22 -2.89 16 27 C -0.15 -3.81 10.04 22.29 0.22 -3.58 16 28 C -0.10 -2.91 10.04 22.25 0.22 -2.69 16 29 C -0.19 -6.61 8.97 22.39 0.20 -6.41 16 30 H 0.11 4.49 4.38 -2.39 -0.01 4.48 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 1.27 8.11 -2.39 -0.02 1.25 16 34 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 1.12 8.11 -2.38 -0.02 1.10 16 39 H 0.03 1.48 6.81 -2.39 -0.02 1.47 16 40 H 0.04 1.85 5.65 -2.38 -0.01 1.84 16 41 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 42 H 0.12 4.93 6.16 -2.91 -0.02 4.91 16 43 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 44 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 46 H 0.16 5.98 4.73 -44.86 -0.21 5.76 16 Total: -1.00 -64.67 387.81 8.32 -56.35 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.82 Total: 26.13 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.42 Total: 10.10 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -1.05 Total: -84.84 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: 0.12 Total: -49.59 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -64.67 8.32 -56.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744791472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.403 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds