Wall clock time and date at job start Wed Apr 1 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47533 * 2 1 4 4 C 1.36826 * 125.06435 * 265.02389 * 3 2 1 5 5 C 1.34244 * 109.93190 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.50001 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47090 * 265.02495 * 6 5 4 8 8 O 1.20824 * 120.00186 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00221 * 180.02562 * 7 6 5 10 10 C 1.45196 * 117.00409 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47348 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99520 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00119 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00017 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47226 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99993 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00431 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00515 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47127 * 59.99201 * 19 17 15 21 21 H 1.48490 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46860 * 300.00058 * 19 17 15 23 23 C 1.46487 * 106.99688 * 0.02562 * 5 4 3 24 24 C 1.39624 * 134.03153 * 180.02562 * 23 5 4 25 25 C 1.36626 * 119.76497 * 179.97438 * 24 23 5 26 26 C 1.38834 * 120.52624 * 359.97438 * 25 24 23 27 27 C 1.37749 * 120.66679 * 0.02562 * 26 25 24 28 28 C 1.37694 * 125.06287 * 85.01824 * 3 2 1 29 29 H 1.08999 * 109.47413 * 300.00529 * 1 2 3 30 30 H 1.09007 * 109.46735 * 60.00114 * 1 2 3 31 31 H 1.09003 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47413 * 239.99471 * 2 1 3 33 33 H 1.09007 * 109.46735 * 119.99886 * 2 1 3 34 34 H 1.08005 * 125.03598 * 0.26106 * 4 3 2 35 35 H 1.09002 * 109.47157 * 25.02378 * 6 5 4 36 36 H 1.08999 * 109.46829 * 145.02662 * 6 5 4 37 37 H 1.09004 * 109.47005 * 300.00166 * 10 9 7 38 38 H 1.09005 * 109.47158 * 59.99835 * 10 9 7 39 39 H 0.97008 * 120.00025 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47245 * 300.00398 * 14 13 11 41 41 H 1.08999 * 109.47024 * 60.00566 * 14 13 11 42 42 H 0.96997 * 120.00044 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.11866 * 359.97438 * 24 23 5 44 44 H 1.08004 * 119.73591 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.66385 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.10785 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3720 2.0898 -1.1157 5 6 2.7749 3.3219 -0.7666 6 6 3.2457 4.4087 -1.6985 7 6 4.7495 4.3761 -1.7891 8 8 5.3749 3.5544 -1.1618 9 8 5.3944 5.2599 -2.5667 10 6 6.8430 5.1695 -2.6062 11 6 7.3880 6.2338 -3.5236 12 8 6.6300 6.9933 -4.0888 13 7 8.7175 6.3408 -3.7166 14 6 9.2473 7.3750 -4.6088 15 6 10.7508 7.2812 -4.6497 16 1 11.2607 6.5265 -4.0694 17 6 11.4754 8.1590 -5.4278 18 7 10.8544 9.0778 -6.1347 19 14 13.3391 8.0423 -5.4790 20 1 13.7375 6.7033 -5.9825 21 1 13.8760 9.0907 -6.3832 22 1 13.8851 8.2397 -4.1122 23 6 2.6713 3.4091 0.6920 24 6 2.9389 4.4121 1.6257 25 6 2.7320 4.1741 2.9550 26 6 2.2570 2.9425 3.3853 27 6 1.9864 1.9390 2.4813 28 6 2.1898 2.1595 1.1228 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.3287 1.7152 -2.1278 35 1 2.8185 4.2487 -2.6885 36 1 2.9256 5.3782 -1.3169 37 1 7.2436 5.3151 -1.6030 38 1 7.1358 4.1865 -2.9752 39 1 9.3237 5.7325 -3.2653 40 1 8.8464 7.2297 -5.6119 41 1 8.9549 8.3580 -4.2395 42 1 11.3642 9.6951 -6.6824 43 1 3.3082 5.3727 1.2982 44 1 2.9395 4.9502 3.6769 45 1 2.0980 2.7696 4.4395 46 1 1.6176 0.9843 2.8260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748419384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:34 Heat of formation + Delta-G solvation = -66.652643 kcal Electronic energy + Delta-G solvation = -28260.068312 eV Core-core repulsion = 24115.235551 eV Total energy + Delta-G solvation = -4144.832761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70736 -40.35075 -38.65589 -37.39595 -36.31206 -34.69758 -34.22083 -32.39696 -31.98109 -30.66630 -29.32003 -29.15980 -27.47303 -26.41011 -23.91865 -22.82166 -22.63070 -21.75922 -21.04209 -19.90696 -19.60126 -17.71206 -17.50811 -17.07904 -16.96097 -16.48470 -16.05639 -15.66615 -15.45968 -15.18968 -14.99591 -14.81480 -14.73276 -14.28309 -14.10227 -13.85985 -13.46481 -13.20077 -13.00483 -12.90311 -12.81580 -12.58321 -12.33997 -12.18828 -11.96573 -11.83006 -11.72347 -11.55821 -11.52266 -11.02415 -11.00964 -10.89291 -10.60301 -10.49071 -10.33523 -9.76723 -9.44298 -9.13994 -8.76509 -8.37997 -7.96551 -7.83143 -6.18362 -4.25798 0.91438 1.43436 2.15684 2.27052 2.46401 2.81735 3.21663 3.25109 3.29964 3.31527 3.73077 4.08170 4.17951 4.35147 4.37375 4.48101 4.52667 4.60244 4.73575 4.83354 4.89936 4.93642 5.01859 5.14028 5.16252 5.17645 5.26879 5.29527 5.31091 5.36064 5.38681 5.50317 5.54382 5.57214 5.65257 5.90820 6.26563 6.41856 6.45121 6.53584 6.56858 6.97591 7.04702 7.24537 7.33520 7.47512 7.61508 7.83164 7.93467 8.52480 8.72844 8.98983 9.40497 10.91717 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.001697 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.873713 B =16491.815260 C =16915.325205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.482 5.482 4 C 0.073 3.927 5 C -0.165 4.165 6 C -0.033 4.033 7 C 0.457 3.543 8 O -0.502 6.502 9 O -0.332 6.332 10 C 0.049 3.951 11 C 0.500 3.500 12 O -0.535 6.535 13 N -0.707 5.707 14 C 0.251 3.749 15 C -0.546 4.546 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.089 4.089 24 C -0.069 4.069 25 C -0.146 4.146 26 C -0.101 4.101 27 C -0.130 4.130 28 C 0.099 3.901 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.204 -18.661 16.205 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.165 5.165 4 C -0.052 4.052 5 C -0.172 4.172 6 C -0.071 4.071 7 C 0.299 3.701 8 O -0.389 6.389 9 O -0.247 6.247 10 C -0.028 4.028 11 C 0.283 3.717 12 O -0.412 6.412 13 N -0.358 5.358 14 C 0.131 3.869 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.093 4.093 24 C -0.087 4.087 25 C -0.166 4.166 26 C -0.121 4.121 27 C -0.150 4.150 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.604 -18.513 15.787 33.209 hybrid contribution 1.540 -0.495 0.169 1.627 sum -21.063 -19.008 15.956 32.551 Atomic orbital electron populations 1.22198 0.94623 1.02865 1.03226 1.21741 0.95235 0.80289 1.04234 1.43916 1.56109 1.11905 1.04571 1.21549 1.01023 0.91326 0.91324 1.19488 1.10686 0.95270 0.91733 1.19510 0.87220 0.99649 1.00751 1.23873 0.91900 0.78223 0.76084 1.90672 1.68884 1.36892 1.42439 1.86567 1.21130 1.54420 1.62584 1.22818 0.78135 1.00323 1.01533 1.19919 0.83750 0.85148 0.82925 1.90703 1.57501 1.43756 1.49243 1.46368 1.04912 1.36485 1.47996 1.19164 0.93362 0.85674 0.88686 1.21178 0.90694 1.17493 1.29063 0.91827 1.24949 0.99293 0.94826 0.94899 1.69961 1.36158 1.18104 1.27958 0.86446 0.84314 0.77881 0.78103 1.20061 1.21044 1.20039 1.18968 1.03953 0.93813 0.92595 1.20289 0.98214 0.97967 0.92241 1.20623 1.02864 0.97574 0.95503 1.20786 0.99449 0.93038 0.98789 1.19966 1.05744 1.00012 0.89317 1.18193 1.02890 0.91063 0.88429 0.91899 0.91806 0.90819 0.89118 0.89662 0.81461 0.86826 0.86807 0.88677 0.88715 0.77456 0.95270 0.95257 0.92327 0.86198 0.86064 0.85932 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.11 0.57 6.72 -4.05 -0.03 0.54 16 3 N -0.48 -4.26 2.78 -114.43 -0.32 -4.58 16 4 C 0.07 0.67 11.19 -16.73 -0.19 0.48 16 5 C -0.16 -1.78 4.81 -102.71 -0.49 -2.28 16 6 C -0.03 -0.33 6.34 -29.04 -0.18 -0.52 16 7 C 0.46 6.31 7.95 36.00 0.29 6.59 16 8 O -0.50 -8.09 15.78 -18.75 -0.30 -8.38 16 9 O -0.33 -5.29 9.75 -45.90 -0.45 -5.74 16 10 C 0.05 0.78 5.94 36.01 0.21 0.99 16 11 C 0.50 10.16 7.91 -10.99 -0.09 10.07 16 12 O -0.53 -13.17 16.50 -14.10 -0.23 -13.41 16 13 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 14 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 15 C -0.55 -14.72 9.28 -34.44 -0.32 -15.04 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.88 -25.90 13.29 55.43 0.74 -25.17 16 19 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.09 -1.05 6.35 -105.14 -0.67 -1.72 16 24 C -0.07 -0.76 10.05 -39.65 -0.40 -1.16 16 25 C -0.15 -1.40 9.97 -39.94 -0.40 -1.80 16 26 C -0.10 -0.89 10.01 -39.54 -0.40 -1.28 16 27 C -0.13 -1.19 10.00 -39.43 -0.39 -1.58 16 28 C 0.10 1.06 6.81 -83.99 -0.57 0.49 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -36.20 403.01 -9.85 -46.05 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.64 Total: 2.86 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.37 Total: 1.71 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.08 Total: -44.90 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.98 Total: -27.53 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.20 -9.85 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748419384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.603 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds