Wall clock time and date at job start Wed Apr 1 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.50701 * 109.47182 * 240.00370 * 2 1 3 5 5 O 1.20831 * 119.99859 * 240.00033 * 4 2 1 6 6 O 1.34228 * 120.00318 * 59.99892 * 4 2 1 7 7 C 1.45196 * 117.00096 * 180.02562 * 6 4 2 8 8 C 1.50698 * 109.47262 * 179.97438 * 7 6 4 9 9 O 1.21287 * 120.00051 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00501 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00193 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47132 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00138 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00528 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99186 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46976 * 59.99869 * 16 14 12 18 18 H 1.48503 * 109.46658 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47098 * 299.99804 * 16 14 12 20 20 C 1.50695 * 109.47412 * 119.99706 * 2 1 3 21 21 C 1.34241 * 126.49588 * 59.97908 * 20 2 1 22 22 N 1.36833 * 109.93022 * 180.02562 * 21 20 2 23 23 C 1.46497 * 125.06377 * 179.97438 * 22 21 20 24 24 C 1.37688 * 109.87243 * 0.02562 * 22 21 20 25 25 C 1.39129 * 133.50461 * 179.71370 * 24 22 21 26 26 C 1.37747 * 119.77762 * 179.91587 * 25 24 22 27 27 C 1.38834 * 120.66433 * 0.37593 * 26 25 24 28 28 C 1.36628 * 120.53209 * 359.83415 * 27 26 25 29 29 C 1.39629 * 119.76327 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46944 * 300.00047 * 1 2 3 32 32 H 1.09005 * 109.46977 * 59.99538 * 1 2 3 33 33 H 1.09000 * 109.46927 * 299.99844 * 7 6 4 34 34 H 1.08998 * 109.47104 * 59.99915 * 7 6 4 35 35 H 0.97001 * 119.99626 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47220 * 299.99681 * 11 10 8 37 37 H 1.08998 * 109.47241 * 60.00015 * 11 10 8 38 38 H 0.97000 * 119.99632 * 180.02562 * 15 14 12 39 39 H 1.08002 * 125.03847 * 0.02562 * 21 20 2 40 40 H 1.08997 * 109.47680 * 270.02452 * 23 22 21 41 41 H 1.09002 * 109.47387 * 30.02992 * 23 22 21 42 42 H 1.09007 * 109.46781 * 150.02391 * 23 22 21 43 43 H 1.08001 * 120.10753 * 0.28870 * 25 24 22 44 44 H 1.07998 * 119.66462 * 180.16293 * 26 25 24 45 45 H 1.07999 * 119.73036 * 179.80369 * 27 26 25 46 46 H 1.07997 * 120.11684 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7270 -1.6928 -1.1197 6 8 1.7081 -0.2517 -2.4496 7 6 2.2268 -0.9862 -3.5897 8 6 1.7619 -0.3297 -4.8640 9 8 1.0619 0.6596 -4.8161 10 7 2.1240 -0.8418 -6.0570 11 6 1.6725 -0.2032 -7.2957 12 6 2.2118 -0.9648 -8.4789 13 1 2.8295 -1.8371 -8.3237 14 6 1.9167 -0.5481 -9.7598 15 7 1.1642 0.5137 -9.9487 16 14 2.5859 -1.4919 -11.2264 17 1 2.0917 -2.8915 -11.1817 18 1 2.1270 -0.8453 -12.4821 19 1 4.0702 -1.4892 -11.1814 20 6 2.0324 -0.7103 1.2304 21 6 1.7895 -1.9859 1.5711 22 7 2.4103 -2.2788 2.7548 23 6 2.3637 -3.5777 3.4306 24 6 3.0844 -1.1706 3.2166 25 6 3.8574 -0.9215 4.3462 26 6 4.4154 0.3240 4.5323 27 6 4.2082 1.3381 3.6070 28 6 3.4490 1.1167 2.4929 29 6 2.8771 -0.1395 2.2823 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.3163 -0.9859 -3.5569 34 1 1.8626 -2.0130 -3.5566 35 1 2.6842 -1.6327 -6.0953 36 1 0.5830 -0.2039 -7.3286 37 1 2.0364 0.8238 -7.3286 38 1 0.9563 0.8066 -10.8497 39 1 1.1926 -2.6783 0.9961 40 1 1.5129 -3.6028 4.1115 41 1 2.2590 -4.3697 2.6890 42 1 3.2847 -3.7273 3.9942 43 1 4.0243 -1.7040 5.0717 44 1 5.0173 0.5146 5.4085 45 1 4.6503 2.3100 3.7696 46 1 3.2918 1.9105 1.7777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772856676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:54 Heat of formation + Delta-G solvation = -84.748904 kcal Electronic energy + Delta-G solvation = -28565.172107 eV Core-core repulsion = 24419.554634 eV Total energy + Delta-G solvation = -4145.617473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46438 -41.59909 -40.35958 -38.01424 -37.54606 -36.17631 -35.75625 -34.41313 -32.64439 -31.20098 -30.77191 -29.59154 -28.51314 -27.14408 -25.58787 -24.54196 -23.58696 -22.60458 -22.20284 -21.63518 -20.24384 -19.17314 -18.74710 -18.01028 -17.91502 -17.51532 -17.34457 -16.99200 -16.71095 -16.36972 -16.19500 -16.16057 -15.82783 -14.91899 -14.87618 -14.71996 -14.66285 -14.43256 -14.11940 -13.96727 -13.80017 -13.65507 -13.61563 -13.36849 -13.17410 -12.95757 -12.86312 -12.68311 -12.48515 -12.24196 -12.21299 -12.10063 -11.86858 -11.70609 -11.52811 -11.42835 -10.89747 -10.80532 -10.49767 -9.92688 -9.09441 -8.51793 -8.29248 -6.45985 0.20828 0.70716 1.12043 1.18080 1.44360 1.47861 1.56033 1.56205 1.78624 1.91384 2.35349 2.61150 3.00648 3.05732 3.55825 3.67583 3.73473 3.80735 3.89322 4.04995 4.06046 4.06872 4.18073 4.25967 4.28833 4.36895 4.45025 4.61347 4.70038 4.72384 4.77214 4.88399 4.94423 5.01542 5.07490 5.19261 5.22242 5.26956 5.32175 5.42042 5.58042 5.63257 5.72783 5.79617 5.82241 5.86781 6.27213 6.40092 6.61425 6.64123 6.79547 7.20534 7.35949 8.82571 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.001754 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.521716 B =15963.807386 C =16223.495533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 H 0.121 0.879 4 C 0.466 3.534 5 O -0.521 6.521 6 O -0.345 6.345 7 C 0.060 3.940 8 C 0.500 3.500 9 O -0.582 6.582 10 N -0.699 5.699 11 C 0.267 3.733 12 C -0.559 4.559 13 H 0.086 0.914 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.189 4.189 21 C 0.086 3.914 22 N -0.488 5.488 23 C 0.072 3.928 24 C 0.076 3.924 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.150 4.150 28 C -0.093 4.093 29 C -0.120 4.120 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.412 0.588 36 H -0.007 1.007 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.177 0.823 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -7.546 32.628 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.015 4.015 3 H 0.139 0.861 4 C 0.310 3.690 5 O -0.409 6.409 6 O -0.260 6.260 7 C -0.017 4.017 8 C 0.286 3.714 9 O -0.462 6.462 10 N -0.351 5.351 11 C 0.144 3.856 12 C -0.597 4.597 13 H 0.104 0.896 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.808 3.192 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.196 4.196 21 C -0.041 4.041 22 N -0.170 5.170 23 C -0.068 4.068 24 C -0.030 4.030 25 C -0.154 4.154 26 C -0.125 4.125 27 C -0.169 4.169 28 C -0.111 4.111 29 C -0.125 4.125 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.248 0.752 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.195 0.805 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.010 -7.392 32.672 33.737 hybrid contribution 0.375 -0.498 -1.288 1.431 sum 4.385 -7.890 31.385 32.657 Atomic orbital electron populations 1.21784 0.90004 1.03447 1.03987 1.19200 0.98544 0.99651 0.84111 0.86126 1.24381 0.77003 0.82951 0.84656 1.90635 1.36175 1.26805 1.87296 1.86575 1.69445 1.55249 1.14743 1.22706 1.01450 0.96330 0.81221 1.20688 0.80601 0.84427 0.85712 1.90685 1.39675 1.27911 1.87970 1.46049 1.52134 1.31763 1.05152 1.18622 0.93600 0.92525 0.80816 1.21584 1.33462 1.13828 0.90776 0.89646 1.26056 0.94890 0.95942 1.02648 1.70126 1.37614 1.25631 1.23364 0.85199 0.78949 0.78476 0.76543 1.18673 1.21124 1.18733 1.19533 1.07727 0.95063 0.97233 1.21731 0.98493 0.96400 0.87470 1.44015 1.42619 1.10859 1.19514 1.22216 1.04547 0.81281 0.98781 1.18554 0.99675 0.87205 0.97548 1.20322 0.99967 0.99008 0.96098 1.21171 0.99362 0.91953 0.99972 1.20945 1.00613 1.00568 0.94760 1.20521 0.97223 0.95001 0.98386 1.19278 1.02187 0.94891 0.96098 0.91605 0.89419 0.91422 0.86329 0.85864 0.75188 0.98887 0.99005 0.92196 0.80543 0.89775 0.88701 0.89016 0.84320 0.83223 0.84115 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.01 71.98 0.65 -1.78 16 2 C 0.00 0.10 3.22 -12.29 -0.04 0.06 16 3 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.47 12.63 7.20 71.24 0.51 13.14 16 5 O -0.52 -15.53 15.12 21.95 0.33 -15.20 16 6 O -0.34 -10.75 9.66 -45.04 -0.43 -11.19 16 7 C 0.06 1.77 5.94 71.24 0.42 2.19 16 8 C 0.50 20.27 7.91 87.66 0.69 20.96 16 9 O -0.58 -29.45 16.50 15.75 0.26 -29.19 16 10 N -0.70 -29.16 5.55 -466.80 -2.59 -31.75 16 11 C 0.27 14.47 5.43 85.63 0.46 14.94 16 12 C -0.56 -30.00 9.28 25.60 0.24 -29.77 16 13 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 16 Si 0.99 41.93 29.54 68.60 2.03 43.95 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 C -0.19 -4.18 4.63 -18.63 -0.09 -4.27 16 21 C 0.09 1.69 9.96 83.00 0.83 2.52 16 22 N -0.49 -8.53 3.18 -539.26 -1.71 -10.25 16 23 C 0.07 0.63 11.03 127.77 1.41 2.04 16 24 C 0.08 1.54 6.81 39.03 0.27 1.80 16 25 C -0.13 -2.12 9.97 22.37 0.22 -1.90 16 26 C -0.11 -1.52 10.01 22.30 0.22 -1.30 16 27 C -0.15 -2.43 9.97 22.04 0.22 -2.21 16 28 C -0.09 -1.85 10.05 22.23 0.22 -1.63 16 29 C -0.12 -2.73 6.35 -20.20 -0.13 -2.85 16 30 H 0.06 1.08 8.02 -2.39 -0.02 1.06 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.37 8.11 -2.38 -0.02 1.35 16 33 H 0.12 3.01 8.13 -2.39 -0.02 2.99 16 34 H 0.12 3.00 8.13 -2.39 -0.02 2.98 16 35 H 0.41 13.86 8.32 -92.71 -0.77 13.09 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.58 8.11 -2.38 -0.02 0.56 16 43 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -78.84 400.25 4.97 -73.87 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.23 Total: 22.37 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.58 Total: 12.66 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.02 Total: -97.27 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: 0.16 Total: -55.58 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -78.84 4.97 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772856676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.879 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds