Wall clock time and date at job start Wed Apr 1 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47246 * 2 1 4 4 C 1.34943 * 126.03813 * 124.96997 * 3 2 1 5 5 C 1.35319 * 107.74405 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.03945 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.46840 * 269.97169 * 6 5 4 8 8 O 1.45200 * 109.47026 * 180.02562 * 7 6 5 9 9 C 1.34225 * 116.99960 * 179.97438 * 8 7 6 10 10 O 1.20829 * 120.00251 * 359.97438 * 9 8 7 11 11 C 1.50704 * 120.00292 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47286 * 179.97438 * 11 9 8 13 13 C 1.38293 * 119.93336 * 269.72485 * 12 11 9 14 14 C 1.38098 * 120.06904 * 179.72519 * 13 12 11 15 15 C 1.38875 * 119.93328 * 0.57132 * 14 13 12 16 16 O 1.35754 * 120.07546 * 179.68005 * 15 14 13 17 17 C 1.34823 * 117.00180 * 174.48343 * 16 15 14 18 18 H 1.07999 * 120.00238 * 5.06401 * 17 16 15 19 19 C 1.38652 * 119.99954 * 185.05696 * 17 16 15 20 20 N 1.31557 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00037 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47072 * 89.99989 * 21 19 17 23 23 H 1.48499 * 109.47142 * 210.00003 * 21 19 17 24 24 H 1.48499 * 109.47127 * 330.00272 * 21 19 17 25 25 C 1.38884 * 119.85630 * 359.70229 * 15 14 13 26 26 C 1.38100 * 119.93591 * 0.02562 * 25 15 14 27 27 C 1.39865 * 107.92069 * 359.97438 * 5 4 3 28 28 N 1.30834 * 108.20555 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47079 * 300.00726 * 1 2 3 31 31 H 1.09007 * 109.46590 * 60.00591 * 1 2 3 32 32 H 1.09001 * 109.47441 * 240.00073 * 2 1 3 33 33 H 1.08997 * 109.47002 * 119.99686 * 2 1 3 34 34 H 1.07994 * 126.12734 * 0.02562 * 4 3 2 35 35 H 1.09000 * 109.47620 * 29.96460 * 6 5 4 36 36 H 1.09000 * 109.47665 * 149.97189 * 6 5 4 37 37 H 1.08999 * 109.46627 * 299.99500 * 7 6 5 38 38 H 1.08995 * 109.47254 * 59.99956 * 7 6 5 39 39 H 1.08995 * 109.46756 * 299.99992 * 11 9 8 40 40 H 1.08999 * 109.46910 * 59.99268 * 11 9 8 41 41 H 1.07998 * 119.96635 * 359.97438 * 13 12 11 42 42 H 1.08002 * 120.03295 * 180.27489 * 14 13 12 43 43 H 0.96997 * 119.99686 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03181 * 179.97438 * 25 15 14 45 45 H 1.07991 * 119.96869 * 179.97438 * 26 25 15 46 46 H 1.08003 * 125.89652 * 180.26641 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8727 1.9213 0.8942 5 6 3.0710 3.2139 0.5464 6 6 3.9542 4.2002 1.2663 7 6 3.1388 4.9280 2.3370 8 8 3.9896 5.8788 3.0302 9 6 3.4227 6.6048 4.0066 10 8 2.2542 6.4512 4.2730 11 6 4.2437 7.6114 4.7707 12 6 3.3775 8.2867 5.8025 13 6 2.6928 9.4437 5.4783 14 6 1.8938 10.0618 6.4199 15 6 1.7875 9.5269 7.6971 16 8 1.0079 10.1357 8.6269 17 6 0.8580 9.5041 9.8085 18 1 1.4118 8.5993 10.0113 19 6 -0.0070 10.0161 10.7635 20 7 -0.6818 11.1180 10.5164 21 14 -0.2142 9.1413 12.4010 22 1 0.7757 9.6701 13.3735 23 1 -1.5873 9.3741 12.9164 24 1 0.0044 7.6843 12.2150 25 6 2.4808 8.3680 8.0213 26 6 3.2738 7.7514 7.0736 27 6 2.3124 3.4724 -0.5998 28 7 1.6808 2.3747 -0.9282 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3182 1.4129 1.7364 35 1 4.7818 3.6703 1.7377 36 1 4.3462 4.9251 0.5529 37 1 2.3112 5.4580 1.8656 38 1 2.7468 4.2032 3.0504 39 1 5.0713 7.1040 5.2664 40 1 4.6364 8.3585 4.0811 41 1 2.7800 9.8621 4.4865 42 1 1.3558 10.9629 6.1647 43 1 -1.2872 11.4760 11.1844 44 1 2.4005 7.9498 9.0138 45 1 3.8135 6.8505 7.3252 46 1 2.2603 4.4144 -1.1255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781659908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:00 Heat of formation + Delta-G solvation = -39.560273 kcal Electronic energy + Delta-G solvation = -27651.205122 eV Core-core repulsion = 23507.547175 eV Total energy + Delta-G solvation = -4143.657947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19648 -41.48891 -40.65094 -38.51104 -37.46461 -35.69393 -34.42024 -33.76944 -32.89579 -31.79180 -31.17147 -29.28245 -28.20333 -27.06865 -24.97586 -24.16044 -23.65038 -22.81831 -21.68317 -21.49916 -20.88856 -19.85528 -18.85725 -18.63168 -17.80902 -17.56444 -17.25704 -16.42894 -16.40013 -16.29382 -15.91948 -15.52316 -15.41739 -15.24590 -15.06470 -14.85851 -14.50076 -14.39252 -14.18246 -13.97515 -13.82269 -13.60124 -13.33218 -13.03169 -12.97537 -12.89350 -12.66887 -12.52862 -12.49325 -12.33064 -12.29784 -12.24412 -12.12918 -11.60984 -11.43369 -11.29795 -11.18275 -10.79427 -10.40572 -9.77514 -9.37108 -8.94280 -8.47832 -6.16115 0.59344 0.60966 0.93318 1.33159 1.34045 1.42985 1.51961 1.58132 1.68562 2.02931 2.17373 2.84178 3.16864 3.51089 3.56436 3.79887 3.92543 4.04213 4.05806 4.07034 4.08999 4.17776 4.19725 4.20603 4.34399 4.38132 4.46771 4.57724 4.59089 4.62373 4.72567 4.76720 4.79924 4.83397 4.93955 5.04304 5.11732 5.14321 5.19622 5.28935 5.29244 5.53434 5.56873 5.70343 5.70955 5.74493 6.02242 6.13530 6.21788 6.72676 6.89445 6.96648 7.77406 8.75455 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.001681 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.345338 B =16655.221136 C =17828.310129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 N -0.378 5.378 4 C 0.065 3.935 5 C -0.255 4.255 6 C -0.021 4.021 7 C 0.070 3.930 8 O -0.353 6.353 9 C 0.461 3.539 10 O -0.542 6.542 11 C -0.048 4.048 12 C -0.158 4.158 13 C -0.054 4.054 14 C -0.207 4.207 15 C 0.115 3.885 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.245 4.245 26 C -0.055 4.055 27 C 0.043 3.957 28 N -0.334 5.334 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.205 0.795 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.143 0.857 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 -22.513 -20.815 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.082 4.082 5 C -0.267 4.267 6 C -0.060 4.060 7 C -0.004 4.004 8 O -0.270 6.270 9 C 0.305 3.695 10 O -0.431 6.431 11 C -0.085 4.085 12 C -0.159 4.159 13 C -0.072 4.072 14 C -0.227 4.227 15 C 0.065 3.935 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.265 4.265 26 C -0.073 4.073 27 C -0.142 4.142 28 N -0.156 5.156 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.222 0.778 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.160 0.840 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 11.938 -22.980 -21.521 33.672 hybrid contribution -0.549 0.462 1.408 1.580 sum 11.389 -22.519 -20.113 32.270 Atomic orbital electron populations 1.22023 0.94151 1.03916 1.01918 1.22031 0.95866 0.76172 1.05707 1.49022 1.35265 1.10938 1.20771 1.22972 0.94370 0.94709 0.96143 1.19975 1.09611 0.95516 1.01574 1.19631 0.95747 0.95642 0.94937 1.23186 0.93118 0.89877 0.94205 1.86461 1.44264 1.49791 1.46483 1.24379 0.87045 0.80259 0.77773 1.90727 1.19889 1.66482 1.66039 1.20243 0.96500 0.95976 0.95771 1.19233 1.04118 0.97759 0.94800 1.20918 0.93437 0.94525 0.98299 1.20451 1.06623 1.03892 0.91706 1.19976 0.90956 0.92455 0.90162 1.83939 1.60771 1.45823 1.23379 1.21832 1.26917 1.10188 0.90113 0.88117 1.26625 0.94595 0.97238 1.03712 1.70189 1.27011 1.21780 1.36897 0.84573 0.78396 0.78399 0.74739 1.18485 1.19613 1.17801 1.21246 1.04445 0.99058 1.01712 1.20975 0.95817 0.98179 0.92359 1.24213 0.95299 0.97870 0.96826 1.77279 1.24877 0.98047 1.15388 0.88281 0.93351 0.93229 0.88885 0.85565 0.77791 0.88672 0.89061 0.92706 0.92334 0.84082 0.83970 0.83240 0.86878 0.91831 0.86303 0.83957 0.78755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.10 71.98 0.73 -0.84 16 2 C 0.12 0.98 7.23 86.38 0.62 1.61 16 3 N -0.38 -5.74 3.68 -348.06 -1.28 -7.02 16 4 C 0.07 0.83 11.36 83.54 0.95 1.78 16 5 C -0.26 -3.79 5.35 -20.14 -0.11 -3.89 16 6 C -0.02 -0.26 6.08 29.85 0.18 -0.08 16 7 C 0.07 1.31 5.45 71.98 0.39 1.70 16 8 O -0.35 -7.13 10.22 -51.37 -0.53 -7.66 16 9 C 0.46 11.58 7.95 71.24 0.57 12.14 16 10 O -0.54 -19.04 15.78 21.96 0.35 -18.70 16 11 C -0.05 -0.96 5.94 29.10 0.17 -0.79 16 12 C -0.16 -4.91 4.38 -19.84 -0.09 -5.00 16 13 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 14 C -0.21 -9.20 9.99 22.39 0.22 -8.98 16 15 C 0.11 5.95 6.65 22.58 0.15 6.10 16 16 O -0.23 -14.45 9.76 -22.71 -0.22 -14.67 16 17 C -0.41 -24.79 9.49 67.92 0.64 -24.14 16 18 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 20 N -0.92 -57.63 13.67 21.61 0.30 -57.34 16 21 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 25 C -0.25 -11.06 9.17 22.39 0.21 -10.86 16 26 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 27 C 0.04 0.76 11.96 85.24 1.02 1.78 16 28 N -0.33 -6.87 12.42 -57.03 -0.71 -7.58 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 0.24 8.07 -2.39 -0.02 0.22 16 34 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 38 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 40 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 45 H 0.14 3.91 8.06 -2.92 -0.02 3.89 16 46 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -85.68 401.17 7.48 -78.20 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.99 Total: 22.81 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 6.56 Total: -33.79 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.69 Total: -71.94 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.40 Total: -41.02 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -85.68 7.48 -78.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781659908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.642 kcal (2) G-P(sol) polarization free energy of solvation -85.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds