Wall clock time and date at job start Wed Apr 1 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 C 1.53004 * 109.46956 * 119.99163 * 2 1 3 5 5 C 1.50703 * 109.47349 * 295.00303 * 4 2 1 6 6 O 1.20830 * 119.99779 * 359.97438 * 5 4 2 7 7 O 1.34233 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.45191 * 116.99846 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47001 * 179.97438 * 8 7 5 10 10 O 1.21276 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99698 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99441 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46790 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00226 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00278 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99583 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47221 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47175 * 120.00463 * 17 15 13 20 20 H 1.48505 * 109.47017 * 240.00033 * 17 15 13 21 21 C 1.50694 * 109.47337 * 239.99243 * 2 1 3 22 22 C 1.34234 * 126.50481 * 300.33953 * 21 2 1 23 23 N 1.36830 * 109.93384 * 180.14765 * 22 21 2 24 24 H 0.97001 * 125.06783 * 179.82141 * 23 22 21 25 25 C 1.37689 * 109.86882 * 359.54926 * 23 22 21 26 26 C 1.39134 * 133.50571 * 180.26034 * 25 23 22 27 27 C 1.37745 * 119.77479 * 180.02562 * 26 25 23 28 28 C 1.38830 * 120.67221 * 0.02562 * 27 26 25 29 29 C 1.36628 * 120.52453 * 359.97438 * 28 27 26 30 30 C 1.39628 * 119.76381 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47469 * 300.00269 * 1 2 3 33 33 H 1.08997 * 109.47193 * 60.00360 * 1 2 3 34 34 H 1.08997 * 109.47273 * 55.00380 * 4 2 1 35 35 H 1.08999 * 109.46925 * 175.00278 * 4 2 1 36 36 H 1.08999 * 109.47576 * 299.99919 * 8 7 5 37 37 H 1.09007 * 109.47275 * 59.99936 * 8 7 5 38 38 H 0.96988 * 120.00572 * 0.02562 * 11 9 8 39 39 H 1.08991 * 109.47432 * 299.99990 * 12 11 9 40 40 H 1.08998 * 109.46733 * 60.00516 * 12 11 9 41 41 H 0.96998 * 120.00219 * 179.97438 * 16 15 13 42 42 H 1.07999 * 125.03333 * 359.97438 * 22 21 2 43 43 H 1.08000 * 120.10688 * 359.97438 * 26 25 23 44 44 H 1.08006 * 119.66035 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.73837 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.11413 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 8 1.0139 1.0838 2.3636 7 8 1.9838 -0.3892 3.6953 8 6 1.5666 0.4119 4.8321 9 6 2.0367 -0.2411 6.1063 10 8 2.6614 -1.2796 6.0609 11 7 1.7621 0.3286 7.2966 12 6 2.2186 -0.3066 8.5353 13 6 1.7858 0.5249 9.7152 14 1 1.2262 1.4352 9.5581 15 6 2.1032 0.1231 10.9954 16 7 2.7842 -0.9856 11.1867 17 14 1.5660 1.1534 12.4580 18 1 0.8185 2.3432 11.9775 19 1 0.6896 0.3417 13.3401 20 1 2.7626 1.5942 13.2191 21 6 2.0323 -0.7105 -1.2303 22 6 1.7847 -1.9843 -1.5739 23 7 2.4104 -2.2791 -2.7545 24 1 2.3798 -3.1393 -3.2018 25 6 3.0850 -1.1711 -3.2160 26 6 3.8626 -0.9236 -4.3429 27 6 4.4187 0.3226 -4.5301 28 6 4.2121 1.3366 -3.6046 29 6 3.4520 1.1154 -2.4910 30 6 2.8778 -0.1400 -2.2818 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -1.7196 1.2954 35 1 3.1262 -0.7993 1.2058 36 1 2.0003 1.4088 4.7529 37 1 0.4793 0.4885 4.8432 38 1 1.2615 1.1585 7.3331 39 1 1.7846 -1.3033 8.6140 40 1 3.3058 -0.3835 8.5248 41 1 3.0079 -1.2682 12.0872 42 1 1.1831 -2.6750 -1.0017 43 1 4.0302 -1.7063 -5.0680 44 1 5.0217 0.5128 -5.4057 45 1 4.6556 2.3079 -3.7661 46 1 3.2959 1.9088 -1.7751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787226848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:26 Heat of formation + Delta-G solvation = -77.901990 kcal Electronic energy + Delta-G solvation = -27988.457681 eV Core-core repulsion = 23843.137112 eV Total energy + Delta-G solvation = -4145.320569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66760 -40.59558 -38.76349 -37.36615 -36.65675 -35.30506 -34.24516 -32.41256 -31.70671 -29.80022 -29.60966 -28.61308 -27.99938 -26.50318 -23.60699 -23.16259 -22.57532 -22.07560 -20.89510 -19.93051 -19.06229 -18.33304 -17.61578 -17.40168 -16.84650 -16.64659 -16.10957 -15.77782 -15.40371 -15.09019 -14.98642 -14.84207 -14.43348 -14.27838 -14.13472 -13.91341 -13.66241 -13.26785 -13.07497 -12.90022 -12.69748 -12.34276 -12.04827 -12.00672 -11.98970 -11.85065 -11.65055 -11.49529 -11.15727 -10.99212 -10.97897 -10.94217 -10.64788 -10.37736 -10.34758 -9.90290 -9.42616 -9.16939 -8.78986 -8.53509 -7.98802 -7.96776 -6.20144 -4.27455 0.81633 1.32710 2.15882 2.26360 2.54807 2.78950 3.18714 3.22218 3.29479 3.32545 3.61650 3.98742 4.32500 4.33207 4.43254 4.54801 4.69081 4.78381 4.81969 4.89609 4.98234 5.11806 5.15623 5.16173 5.24720 5.26004 5.27424 5.35656 5.38089 5.48898 5.50227 5.57903 5.72105 5.84505 6.01543 6.11414 6.18726 6.31548 6.37787 6.42710 6.50633 6.84484 7.17546 7.22659 7.31211 7.45568 7.59755 7.73126 7.91587 8.50276 8.71249 8.96832 9.39067 10.90050 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.001522 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.170757 B =18387.276708 C =18450.137522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.002 4.002 3 H 0.087 0.913 4 C -0.106 4.106 5 C 0.461 3.539 6 O -0.509 6.509 7 O -0.330 6.330 8 C 0.049 3.951 9 C 0.499 3.501 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.162 4.162 22 C 0.057 3.943 23 N -0.595 5.595 24 H 0.416 0.584 25 C 0.095 3.905 26 C -0.132 4.132 27 C -0.100 4.100 28 C -0.148 4.148 29 C -0.069 4.069 30 C -0.099 4.099 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.266 0.734 42 H 0.170 0.830 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 0.746 -32.611 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 H 0.105 0.895 4 C -0.144 4.144 5 C 0.304 3.696 6 O -0.397 6.397 7 O -0.245 6.245 8 C -0.029 4.029 9 C 0.282 3.718 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.130 3.870 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.169 4.169 22 C -0.069 4.069 23 N -0.197 5.197 24 H 0.253 0.747 25 C -0.012 4.012 26 C -0.153 4.153 27 C -0.119 4.119 28 C -0.167 4.167 29 C -0.087 4.087 30 C -0.104 4.104 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.188 0.812 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.384 0.036 -32.493 32.522 hybrid contribution -0.544 0.514 0.723 1.041 sum -1.929 0.550 -31.769 31.833 Atomic orbital electron populations 1.21999 0.93854 1.01756 1.03197 1.19238 0.96037 0.98902 0.87946 0.89453 1.21528 1.04404 0.99981 0.88466 1.23821 0.76306 0.84433 0.85017 1.90635 1.37473 1.24515 1.87124 1.86577 1.71799 1.51715 1.14429 1.22845 1.01484 0.94887 0.83679 1.19921 0.81466 0.85830 0.84585 1.90705 1.40240 1.23190 1.87098 1.46366 1.55910 1.27023 1.06411 1.19179 0.95803 0.93803 0.78188 1.21252 1.37200 1.09146 0.90717 0.91699 1.24956 0.94740 0.95207 0.99099 1.69984 1.37873 1.22046 1.22291 0.86334 0.78420 0.80019 0.81975 1.19598 1.20779 1.20766 1.20076 1.04926 0.93972 0.97923 1.21610 0.99840 0.97165 0.88303 1.41731 1.44752 1.12141 1.21123 0.74745 1.18260 0.98710 0.87443 0.96829 1.20021 1.00728 0.98161 0.96367 1.20811 0.99467 0.92350 0.99284 1.20647 1.01306 0.99465 0.95278 1.20328 0.95995 0.95119 0.97303 1.19081 1.01757 0.93950 0.95616 0.93059 0.90624 0.92443 0.87603 0.87343 0.88549 0.88568 0.77432 0.95257 0.95253 0.92433 0.81246 0.86396 0.85866 0.86046 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.81 37.16 0.33 -0.99 16 2 C 0.00 -0.02 2.43 -91.78 -0.22 -0.24 16 3 H 0.09 0.87 7.95 -51.93 -0.41 0.45 16 4 C -0.11 -0.98 5.13 -27.88 -0.14 -1.12 16 5 C 0.46 5.87 7.67 36.01 0.28 6.14 16 6 O -0.51 -7.15 13.72 -18.75 -0.26 -7.41 16 7 O -0.33 -5.10 9.75 -45.91 -0.45 -5.55 16 8 C 0.05 0.73 5.94 36.01 0.21 0.95 16 9 C 0.50 9.99 7.91 -10.98 -0.09 9.90 16 10 O -0.53 -13.09 16.50 -14.10 -0.23 -13.32 16 11 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16 12 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 13 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 17 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.16 -1.41 5.05 -102.71 -0.52 -1.93 16 22 C 0.06 0.39 11.26 -16.73 -0.19 0.20 16 23 N -0.60 -3.86 6.07 -10.65 -0.06 -3.92 16 24 H 0.42 1.46 8.96 -40.82 -0.37 1.09 16 25 C 0.09 0.82 7.28 -83.99 -0.61 0.21 16 26 C -0.13 -0.99 10.08 -39.43 -0.40 -1.39 16 27 C -0.10 -0.72 10.01 -39.54 -0.40 -1.12 16 28 C -0.15 -1.16 9.97 -39.94 -0.40 -1.56 16 29 C -0.07 -0.63 10.05 -39.64 -0.40 -1.02 16 30 C -0.10 -0.97 6.35 -105.14 -0.67 -1.64 16 31 H 0.05 0.37 8.01 -51.93 -0.42 -0.04 16 32 H 0.07 0.80 5.96 -51.93 -0.31 0.49 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -35.13 396.23 -9.76 -44.90 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.45 Total: 4.05 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.66 Total: -0.35 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.33 Total: -43.91 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.94 Total: -26.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.13 -9.76 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787226848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.005 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds