Wall clock time and date at job start Wed Apr 1 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 C 1.53004 * 109.46956 * 119.99163 * 2 1 3 5 5 C 1.50703 * 109.47349 * 295.00303 * 4 2 1 6 6 O 1.20830 * 119.99779 * 359.97438 * 5 4 2 7 7 O 1.34233 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.45191 * 116.99846 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47001 * 179.97438 * 8 7 5 10 10 O 1.21276 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99698 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99441 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46790 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00226 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00278 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99583 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47221 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47175 * 120.00463 * 17 15 13 20 20 H 1.48505 * 109.47017 * 240.00033 * 17 15 13 21 21 C 1.50694 * 109.47337 * 239.99243 * 2 1 3 22 22 C 1.34234 * 126.50481 * 300.33953 * 21 2 1 23 23 N 1.36830 * 109.93384 * 180.14765 * 22 21 2 24 24 H 0.97001 * 125.06783 * 179.82141 * 23 22 21 25 25 C 1.37689 * 109.86882 * 359.54926 * 23 22 21 26 26 C 1.39134 * 133.50571 * 180.26034 * 25 23 22 27 27 C 1.37745 * 119.77479 * 180.02562 * 26 25 23 28 28 C 1.38830 * 120.67221 * 0.02562 * 27 26 25 29 29 C 1.36628 * 120.52453 * 359.97438 * 28 27 26 30 30 C 1.39628 * 119.76381 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47469 * 300.00269 * 1 2 3 33 33 H 1.08997 * 109.47193 * 60.00360 * 1 2 3 34 34 H 1.08997 * 109.47273 * 55.00380 * 4 2 1 35 35 H 1.08999 * 109.46925 * 175.00278 * 4 2 1 36 36 H 1.08999 * 109.47576 * 299.99919 * 8 7 5 37 37 H 1.09007 * 109.47275 * 59.99936 * 8 7 5 38 38 H 0.96988 * 120.00572 * 0.02562 * 11 9 8 39 39 H 1.08991 * 109.47432 * 299.99990 * 12 11 9 40 40 H 1.08998 * 109.46733 * 60.00516 * 12 11 9 41 41 H 0.96998 * 120.00219 * 179.97438 * 16 15 13 42 42 H 1.07999 * 125.03333 * 359.97438 * 22 21 2 43 43 H 1.08000 * 120.10688 * 359.97438 * 26 25 23 44 44 H 1.08006 * 119.66035 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.73837 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.11413 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 8 1.0139 1.0838 2.3636 7 8 1.9838 -0.3892 3.6953 8 6 1.5666 0.4119 4.8321 9 6 2.0367 -0.2411 6.1063 10 8 2.6614 -1.2796 6.0609 11 7 1.7621 0.3286 7.2966 12 6 2.2186 -0.3066 8.5353 13 6 1.7858 0.5249 9.7152 14 1 1.2262 1.4352 9.5581 15 6 2.1032 0.1231 10.9954 16 7 2.7842 -0.9856 11.1867 17 14 1.5660 1.1534 12.4580 18 1 0.8185 2.3432 11.9775 19 1 0.6896 0.3417 13.3401 20 1 2.7626 1.5942 13.2191 21 6 2.0323 -0.7105 -1.2303 22 6 1.7847 -1.9843 -1.5739 23 7 2.4104 -2.2791 -2.7545 24 1 2.3798 -3.1393 -3.2018 25 6 3.0850 -1.1711 -3.2160 26 6 3.8626 -0.9236 -4.3429 27 6 4.4187 0.3226 -4.5301 28 6 4.2121 1.3366 -3.6046 29 6 3.4520 1.1154 -2.4910 30 6 2.8778 -0.1400 -2.2818 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -1.7196 1.2954 35 1 3.1262 -0.7993 1.2058 36 1 2.0003 1.4088 4.7529 37 1 0.4793 0.4885 4.8432 38 1 1.2615 1.1585 7.3331 39 1 1.7846 -1.3033 8.6140 40 1 3.3058 -0.3835 8.5248 41 1 3.0079 -1.2682 12.0872 42 1 1.1831 -2.6750 -1.0017 43 1 4.0302 -1.7063 -5.0680 44 1 5.0217 0.5128 -5.4057 45 1 4.6556 2.3079 -3.7661 46 1 3.2959 1.9088 -1.7751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787226848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:25 Heat of formation + Delta-G solvation = -99.226420 kcal Electronic energy + Delta-G solvation = -27989.382378 eV Core-core repulsion = 23843.137112 eV Total energy + Delta-G solvation = -4146.245266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24747 -41.67689 -40.38852 -38.05259 -37.63005 -36.19550 -36.07122 -34.41251 -32.31661 -31.03253 -30.24864 -29.58418 -28.87764 -28.08325 -24.79077 -24.10118 -23.71511 -22.67302 -21.87561 -21.62443 -19.71892 -19.20962 -19.00928 -18.41995 -17.90963 -17.80010 -17.30215 -17.00353 -16.71895 -16.33689 -16.27448 -15.84980 -15.43534 -15.27818 -14.86333 -14.74976 -14.62534 -14.36381 -14.27739 -14.06864 -13.85380 -13.66437 -13.49057 -13.27809 -12.90779 -12.75723 -12.63289 -12.55561 -12.43903 -12.22390 -12.20409 -11.85745 -11.77770 -11.62364 -11.46931 -11.33282 -10.88943 -10.82857 -10.49493 -9.92520 -9.10982 -8.52705 -8.29631 -6.46135 0.24706 0.73549 1.16381 1.30723 1.45307 1.45335 1.56718 1.59201 1.79391 2.30842 2.35447 2.61492 3.02002 3.05796 3.62012 3.70662 3.77405 3.88642 4.05324 4.07382 4.12139 4.18247 4.21960 4.30068 4.44440 4.53934 4.54720 4.68586 4.73672 4.87634 4.90684 4.98885 5.07221 5.11018 5.18692 5.22136 5.32730 5.36827 5.42529 5.51818 5.61743 5.63981 5.74227 5.81780 5.82354 5.88439 6.28343 6.62751 6.66682 6.76201 6.80671 7.20905 7.36464 8.82706 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.001522 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.170757 B =18387.276708 C =18450.137522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.100 4.100 5 C 0.463 3.537 6 O -0.523 6.523 7 O -0.351 6.351 8 C 0.060 3.940 9 C 0.499 3.501 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.265 3.735 13 C -0.557 4.557 14 H 0.086 0.914 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.985 3.015 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.187 4.187 22 C 0.070 3.930 23 N -0.586 5.586 24 H 0.430 0.570 25 C 0.076 3.924 26 C -0.136 4.136 27 C -0.109 4.109 28 C -0.154 4.154 29 C -0.094 4.094 30 C -0.125 4.125 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.412 0.588 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.269 0.731 42 H 0.200 0.800 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.136 0.864 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 1.375 -33.810 33.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.011 4.011 3 H 0.087 0.913 4 C -0.138 4.138 5 C 0.307 3.693 6 O -0.412 6.412 7 O -0.267 6.267 8 C -0.017 4.017 9 C 0.285 3.715 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.104 0.896 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.194 4.194 22 C -0.057 4.057 23 N -0.189 5.189 24 H 0.270 0.730 25 C -0.031 4.031 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.112 4.112 30 C -0.130 4.130 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.248 0.752 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.078 0.922 42 H 0.217 0.783 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.154 0.846 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.511 0.697 -33.746 33.846 hybrid contribution -0.171 0.281 0.981 1.034 sum -2.682 0.977 -32.765 32.889 Atomic orbital electron populations 1.21945 0.93713 1.02594 1.02077 1.19073 0.96002 0.98002 0.88058 0.91257 1.21658 1.04852 1.00576 0.86674 1.24444 0.75667 0.84445 0.84708 1.90633 1.38208 1.25258 1.87070 1.86582 1.72463 1.52399 1.15265 1.22698 1.02940 0.94801 0.81218 1.20751 0.79978 0.84999 0.85807 1.90680 1.42349 1.25555 1.87935 1.46049 1.56082 1.27602 1.05328 1.18636 0.93334 0.92828 0.80896 1.21650 1.37162 1.09727 0.90918 0.89595 1.26049 0.94489 0.96358 1.02611 1.70139 1.39301 1.24166 1.23241 0.85098 0.78000 0.78526 0.77504 1.17655 1.20492 1.20533 1.20045 1.06340 0.94925 0.98042 1.22053 0.98752 0.96885 0.88044 1.41767 1.43897 1.12335 1.20935 0.73021 1.18502 0.99459 0.87944 0.97207 1.20355 1.00006 0.98863 0.96388 1.21147 0.99599 0.92154 0.99870 1.20920 1.00874 1.00466 0.95022 1.20491 0.97200 0.95382 0.98138 1.19404 1.02446 0.94578 0.96577 0.91232 0.92485 0.92694 0.85273 0.86822 0.86084 0.85832 0.75150 0.98901 0.98996 0.92215 0.78309 0.84227 0.83581 0.84633 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.81 71.98 0.63 -1.77 16 2 C 0.01 0.14 2.43 -11.54 -0.03 0.11 16 3 H 0.07 1.42 7.95 -2.38 -0.02 1.40 16 4 C -0.10 -1.72 5.13 29.85 0.15 -1.57 16 5 C 0.46 11.25 7.67 71.24 0.55 11.80 16 6 O -0.52 -14.13 13.72 21.95 0.30 -13.83 16 7 O -0.35 -10.50 9.75 -45.09 -0.44 -10.94 16 8 C 0.06 1.73 5.94 71.24 0.42 2.15 16 9 C 0.50 20.02 7.91 87.66 0.69 20.72 16 10 O -0.58 -29.48 16.50 15.78 0.26 -29.22 16 11 N -0.70 -28.91 5.55 -466.79 -2.59 -31.50 16 12 C 0.27 14.35 5.43 85.63 0.46 14.82 16 13 C -0.56 -29.80 9.28 25.60 0.24 -29.57 16 14 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 17 Si 0.99 41.86 29.54 68.60 2.03 43.88 16 18 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 C -0.19 -3.06 5.05 -18.63 -0.09 -3.15 16 22 C 0.07 0.80 11.26 83.00 0.93 1.73 16 23 N -0.59 -6.42 6.07 -187.61 -1.14 -7.56 16 24 H 0.43 1.97 8.96 -92.71 -0.83 1.14 16 25 C 0.08 1.23 7.28 39.03 0.28 1.52 16 26 C -0.14 -1.84 10.08 22.37 0.23 -1.62 16 27 C -0.11 -1.45 10.01 22.29 0.22 -1.22 16 28 C -0.15 -2.38 9.97 22.03 0.22 -2.16 16 29 C -0.09 -1.75 10.05 22.23 0.22 -1.52 16 30 C -0.13 -2.41 6.35 -20.20 -0.13 -2.54 16 31 H 0.07 0.86 8.01 -2.39 -0.02 0.84 16 32 H 0.06 1.16 5.96 -2.39 -0.01 1.14 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 2.92 8.13 -2.39 -0.02 2.90 16 37 H 0.12 2.91 8.13 -2.38 -0.02 2.89 16 38 H 0.41 13.73 8.32 -92.72 -0.77 12.96 16 39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -78.92 396.23 3.60 -75.32 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.58 Total: 20.60 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.48 Total: 8.45 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.44 Total: -94.27 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: 0.12 Total: -53.98 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -78.92 3.60 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787226848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.905 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds