Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47012 * 2 1 4 4 C 1.34950 * 126.03851 * 125.31000 * 3 2 1 5 5 C 1.35321 * 107.74426 * 180.14645 * 4 3 2 6 6 C 1.50697 * 126.03676 * 179.87047 * 5 4 3 7 7 C 1.52995 * 109.47290 * 269.71550 * 6 5 4 8 8 O 1.45208 * 109.47100 * 180.02562 * 7 6 5 9 9 C 1.34229 * 116.99784 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 C 1.39866 * 107.92284 * 359.60842 * 5 4 3 28 28 N 1.30840 * 108.20087 * 0.24010 * 27 5 4 29 29 H 1.08991 * 109.47361 * 299.99939 * 1 2 3 30 30 H 1.09002 * 109.47165 * 60.00565 * 1 2 3 31 31 H 1.09006 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47451 * 240.00201 * 2 1 3 33 33 H 1.09006 * 109.47407 * 119.99896 * 2 1 3 34 34 H 1.07995 * 126.13027 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46863 * 149.71428 * 6 5 4 36 36 H 1.09003 * 109.47552 * 29.71993 * 6 5 4 37 37 H 1.09002 * 109.47268 * 60.00125 * 7 6 5 38 38 H 1.08998 * 109.47265 * 300.00200 * 7 6 5 39 39 H 1.09002 * 109.46571 * 59.99926 * 11 9 8 40 40 H 1.08992 * 109.46782 * 300.00190 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 46 46 H 1.07996 * 125.90034 * 180.22316 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8776 1.9195 0.8905 5 6 3.0718 3.2136 0.5458 6 6 3.9557 4.1996 1.2651 7 6 3.1414 4.9271 2.3368 8 8 3.9930 5.8777 3.0295 9 6 3.4274 6.6026 4.0074 10 8 2.2595 6.4477 4.2760 11 6 4.2492 7.6089 4.7711 12 6 3.3846 8.2821 5.8056 13 6 2.6938 9.4364 5.4834 14 6 1.8999 10.0575 6.4301 15 6 1.7894 9.5229 7.6989 16 6 2.4861 8.3676 8.0271 17 8 2.3842 7.8432 9.2751 18 6 1.6883 8.5560 10.1837 19 1 1.1743 9.4574 9.8841 20 6 1.6326 8.1318 11.5026 21 7 2.2591 7.0342 11.8675 22 14 0.6692 9.1199 12.7615 23 1 0.0614 10.3035 12.1019 24 1 -0.4032 8.2717 13.3409 25 1 1.5828 9.5698 13.8423 26 6 3.2833 7.7464 7.0742 27 6 2.3120 3.4726 -0.5996 28 7 1.6801 2.3749 -0.9277 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3273 1.4098 1.7297 35 1 4.3470 4.9247 0.5515 36 1 4.7838 3.6695 1.7355 37 1 2.7501 4.2021 3.0504 38 1 2.3133 5.4573 1.8665 39 1 4.6404 8.3568 4.0814 40 1 5.0777 7.1014 5.2650 41 1 2.7746 9.8535 4.4905 42 1 1.3621 10.9587 6.1757 43 1 1.1651 10.0055 8.4364 44 1 2.2204 6.7377 12.7903 45 1 3.8235 6.8456 7.3253 46 1 2.2563 4.4158 -1.1227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810703340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = -17.880493 kcal Electronic energy + Delta-G solvation = -27783.633023 eV Core-core repulsion = 23640.915181 eV Total energy + Delta-G solvation = -4142.717841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57408 -40.33710 -38.94605 -36.95611 -36.16648 -35.12636 -33.07002 -32.39968 -32.00959 -30.59117 -29.27044 -28.47747 -27.14978 -25.26329 -24.40169 -23.44477 -21.81367 -21.45429 -21.09919 -20.42435 -20.15086 -17.65692 -17.62011 -17.17074 -16.95856 -16.54408 -16.12862 -15.75513 -15.11026 -14.81965 -14.68502 -14.45142 -14.38993 -14.10685 -13.81727 -13.54522 -13.48700 -13.18998 -13.08264 -12.75896 -12.67040 -12.54733 -12.42518 -12.04345 -11.84296 -11.78709 -11.70788 -11.51103 -11.27184 -10.87296 -10.85462 -10.77513 -10.61801 -10.46422 -10.41719 -10.23625 -9.76175 -9.32376 -8.82451 -8.73729 -8.09262 -7.21403 -6.42399 -4.01325 1.53792 1.98619 2.14122 2.37052 2.41758 2.44479 2.98345 3.14834 3.15353 3.20998 3.98475 4.03843 4.43254 4.49412 4.54642 4.65516 4.70433 4.79585 4.86831 4.92730 4.98832 5.12362 5.13041 5.17267 5.21219 5.24372 5.33966 5.44581 5.49761 5.54163 5.65708 5.66789 5.75240 5.81369 5.92247 5.94011 6.17881 6.32111 6.34189 6.53463 6.65567 6.67955 6.91884 7.08566 7.25069 7.36309 7.37548 7.44927 7.82129 7.97725 8.02681 9.03453 9.73944 10.75888 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.001759 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.808575 B =15911.985129 C =17141.434796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 N -0.373 5.373 4 C 0.064 3.936 5 C -0.239 4.239 6 C -0.035 4.035 7 C 0.071 3.929 8 O -0.364 6.364 9 C 0.460 3.540 10 O -0.490 6.490 11 C -0.064 4.064 12 C -0.044 4.044 13 C -0.194 4.194 14 C -0.075 4.075 15 C -0.227 4.227 16 C 0.153 3.847 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.172 4.172 27 C 0.055 3.945 28 N -0.295 5.295 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.175 0.825 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -9.528 -23.231 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.155 5.155 4 C -0.083 4.083 5 C -0.251 4.251 6 C -0.074 4.074 7 C -0.003 4.003 8 O -0.282 6.282 9 C 0.301 3.699 10 O -0.375 6.375 11 C -0.102 4.102 12 C -0.044 4.044 13 C -0.213 4.213 14 C -0.093 4.093 15 C -0.247 4.247 16 C 0.100 3.900 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.191 4.191 27 C -0.131 4.131 28 N -0.116 5.116 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.192 0.808 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.470 -10.680 -23.674 26.088 hybrid contribution -0.198 0.764 1.253 1.481 sum 2.271 -9.915 -22.420 24.620 Atomic orbital electron populations 1.22061 0.93613 1.02986 1.03770 1.21714 0.96275 0.77311 1.03794 1.48705 1.35146 1.10309 1.21322 1.22431 0.95095 0.94731 0.96022 1.19815 1.08973 0.94784 1.01544 1.19709 0.96131 0.95803 0.95748 1.23053 0.92850 0.90443 0.93958 1.86456 1.44585 1.50061 1.47131 1.23812 0.87586 0.80470 0.77985 1.90725 1.17703 1.64778 1.64326 1.20259 0.97578 0.95912 0.96405 1.18684 0.97900 0.95326 0.92529 1.20380 1.03497 0.98460 0.98984 1.20690 0.97207 0.98384 0.93028 1.21204 1.05975 0.99633 0.97864 1.19269 0.92518 0.91387 0.86817 1.83977 1.65075 1.44181 1.15043 1.21371 1.29203 1.08169 0.87933 0.89034 1.25284 0.97578 0.96796 0.96930 1.70047 1.40247 1.21337 1.18246 0.85647 0.78858 0.79078 0.79832 1.19107 1.20195 1.20155 1.19967 1.04246 1.02379 0.92521 1.23848 0.95469 0.97531 0.96244 1.77330 1.23572 0.97008 1.13691 0.91896 0.91073 0.90600 0.89778 0.88539 0.80813 0.89973 0.90254 0.91442 0.91331 0.87187 0.87075 0.87713 0.87333 0.85520 0.92129 0.86641 0.79965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.10 37.16 0.38 -0.55 16 2 C 0.13 0.69 7.23 -4.05 -0.03 0.67 16 3 N -0.37 -3.23 3.68 -61.36 -0.23 -3.46 16 4 C 0.06 0.51 11.36 -17.22 -0.20 0.31 16 5 C -0.24 -2.10 5.35 -105.05 -0.56 -2.66 16 6 C -0.04 -0.29 6.08 -27.89 -0.17 -0.46 16 7 C 0.07 0.78 5.45 37.15 0.20 0.98 16 8 O -0.36 -4.59 10.22 -39.25 -0.40 -4.99 16 9 C 0.46 6.97 7.95 36.01 0.29 7.26 16 10 O -0.49 -9.43 15.78 -18.75 -0.30 -9.73 16 11 C -0.06 -0.87 5.94 -29.03 -0.17 -1.04 16 12 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 13 C -0.19 -3.47 9.70 -39.53 -0.38 -3.86 16 14 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 15 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 16 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 17 O -0.18 -5.22 9.76 0.05 0.00 -5.21 16 18 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 19 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 22 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 26 C -0.17 -3.73 9.65 -39.39 -0.38 -4.11 16 27 C 0.06 0.52 11.96 -17.37 -0.21 0.31 16 28 N -0.30 -3.15 12.42 30.62 0.38 -2.77 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.11 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.11 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 46 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -36.03 401.18 -7.74 -43.77 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.46 Total: 3.39 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.52 Total: -17.97 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.91 Total: -31.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.70 Total: -19.94 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.03 -7.74 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810703340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.886 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds