Wall clock time and date at job start Wed Apr 1 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47012 * 2 1 4 4 C 1.34950 * 126.03851 * 125.31000 * 3 2 1 5 5 C 1.35321 * 107.74426 * 180.14645 * 4 3 2 6 6 C 1.50697 * 126.03676 * 179.87047 * 5 4 3 7 7 C 1.52995 * 109.47290 * 269.71550 * 6 5 4 8 8 O 1.45208 * 109.47100 * 180.02562 * 7 6 5 9 9 C 1.34229 * 116.99784 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 C 1.39866 * 107.92284 * 359.60842 * 5 4 3 28 28 N 1.30840 * 108.20087 * 0.24010 * 27 5 4 29 29 H 1.08991 * 109.47361 * 299.99939 * 1 2 3 30 30 H 1.09002 * 109.47165 * 60.00565 * 1 2 3 31 31 H 1.09006 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47451 * 240.00201 * 2 1 3 33 33 H 1.09006 * 109.47407 * 119.99896 * 2 1 3 34 34 H 1.07995 * 126.13027 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46863 * 149.71428 * 6 5 4 36 36 H 1.09003 * 109.47552 * 29.71993 * 6 5 4 37 37 H 1.09002 * 109.47268 * 60.00125 * 7 6 5 38 38 H 1.08998 * 109.47265 * 300.00200 * 7 6 5 39 39 H 1.09002 * 109.46571 * 59.99926 * 11 9 8 40 40 H 1.08992 * 109.46782 * 300.00190 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 46 46 H 1.07996 * 125.90034 * 180.22316 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8776 1.9195 0.8905 5 6 3.0718 3.2136 0.5458 6 6 3.9557 4.1996 1.2651 7 6 3.1414 4.9271 2.3368 8 8 3.9930 5.8777 3.0295 9 6 3.4274 6.6026 4.0074 10 8 2.2595 6.4477 4.2760 11 6 4.2492 7.6089 4.7711 12 6 3.3846 8.2821 5.8056 13 6 2.6938 9.4364 5.4834 14 6 1.8999 10.0575 6.4301 15 6 1.7894 9.5229 7.6989 16 6 2.4861 8.3676 8.0271 17 8 2.3842 7.8432 9.2751 18 6 1.6883 8.5560 10.1837 19 1 1.1743 9.4574 9.8841 20 6 1.6326 8.1318 11.5026 21 7 2.2591 7.0342 11.8675 22 14 0.6692 9.1199 12.7615 23 1 0.0614 10.3035 12.1019 24 1 -0.4032 8.2717 13.3409 25 1 1.5828 9.5698 13.8423 26 6 3.2833 7.7464 7.0742 27 6 2.3120 3.4726 -0.5996 28 7 1.6801 2.3749 -0.9277 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3273 1.4098 1.7297 35 1 4.3470 4.9247 0.5515 36 1 4.7838 3.6695 1.7355 37 1 2.7501 4.2021 3.0504 38 1 2.3133 5.4573 1.8665 39 1 4.6404 8.3568 4.0814 40 1 5.0777 7.1014 5.2650 41 1 2.7746 9.8535 4.4905 42 1 1.3621 10.9587 6.1757 43 1 1.1651 10.0055 8.4364 44 1 2.2204 6.7377 12.7903 45 1 3.8235 6.8456 7.3253 46 1 2.2563 4.4158 -1.1227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810703340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:04 Heat of formation + Delta-G solvation = -39.147415 kcal Electronic energy + Delta-G solvation = -27784.555226 eV Core-core repulsion = 23640.915181 eV Total energy + Delta-G solvation = -4143.640044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20428 -41.55099 -40.65004 -38.49003 -37.51818 -35.70554 -34.35810 -33.87031 -33.41015 -31.18806 -30.93179 -29.43298 -28.37438 -27.26344 -25.02262 -24.24236 -23.32109 -22.95205 -21.72866 -21.67784 -20.91612 -19.49591 -18.79055 -18.69568 -17.81982 -17.61887 -17.21179 -16.73340 -16.39009 -16.35831 -16.09971 -15.49488 -15.44942 -15.25406 -15.06455 -14.83332 -14.55459 -14.34977 -14.06934 -13.96183 -13.84503 -13.60005 -13.33655 -13.04381 -12.98870 -12.92921 -12.67981 -12.54298 -12.50489 -12.39089 -12.30374 -12.23622 -12.08538 -11.63955 -11.49975 -11.32125 -11.20691 -10.81303 -10.41002 -9.69350 -9.37657 -8.99568 -8.47166 -6.15530 0.43868 0.74050 0.92079 1.26239 1.34506 1.42621 1.53100 1.55890 1.67055 1.99421 2.17553 2.84381 3.17011 3.41339 3.55347 3.74527 3.91419 4.01377 4.05439 4.06865 4.10166 4.17313 4.18183 4.31257 4.33302 4.36643 4.41202 4.54695 4.58020 4.60762 4.64981 4.73613 4.75895 4.82103 4.93176 5.01705 5.09338 5.13043 5.18825 5.27819 5.28904 5.49964 5.63154 5.70214 5.70941 5.73423 6.02628 6.11880 6.21933 6.71981 6.82051 6.97536 7.78691 8.76492 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.001759 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.808575 B =15911.985129 C =17141.434796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.378 5.378 4 C 0.063 3.937 5 C -0.255 4.255 6 C -0.021 4.021 7 C 0.070 3.930 8 O -0.352 6.352 9 C 0.465 3.535 10 O -0.540 6.540 11 C -0.062 4.062 12 C -0.037 4.037 13 C -0.176 4.176 14 C -0.074 4.074 15 C -0.243 4.243 16 C 0.110 3.890 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.189 4.189 27 C 0.046 3.954 28 N -0.333 5.333 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.202 0.798 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -8.434 -25.452 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.084 4.084 5 C -0.266 4.266 6 C -0.060 4.060 7 C -0.004 4.004 8 O -0.268 6.268 9 C 0.310 3.690 10 O -0.429 6.429 11 C -0.098 4.098 12 C -0.038 4.038 13 C -0.195 4.195 14 C -0.092 4.092 15 C -0.262 4.262 16 C 0.060 3.940 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.191 1.191 26 C -0.208 4.208 27 C -0.140 4.140 28 N -0.154 5.154 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.219 0.781 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.325 -9.576 -25.976 27.883 hybrid contribution -0.389 0.403 1.575 1.671 sum 2.937 -9.173 -24.401 26.233 Atomic orbital electron populations 1.22017 0.94049 1.03933 1.01950 1.22030 0.95952 0.76188 1.05650 1.49013 1.35036 1.10992 1.20941 1.22959 0.94384 0.94833 0.96210 1.19960 1.09619 0.95353 1.01710 1.19631 0.95709 0.95720 0.94914 1.23221 0.93216 0.89841 0.94138 1.86453 1.44304 1.49801 1.46275 1.24051 0.86871 0.80268 0.77827 1.90727 1.19876 1.66428 1.65856 1.20396 0.96765 0.96705 0.95976 1.19167 0.97423 0.95221 0.91967 1.21024 1.00736 0.97264 1.00438 1.21149 0.97120 0.99385 0.91537 1.21332 1.06029 0.99272 0.99548 1.19876 0.94573 0.93236 0.86308 1.83936 1.67213 1.46074 1.16845 1.21862 1.29654 1.08724 0.88679 0.88181 1.26609 0.98675 0.98007 0.98909 1.70190 1.42997 1.23782 1.18990 0.84513 0.77294 0.77694 0.76576 1.17514 1.19449 1.19105 1.20247 1.04252 1.02511 0.93767 1.24224 0.95197 0.97923 0.96649 1.77271 1.24888 0.98020 1.15250 0.93413 0.93062 0.88284 0.88806 0.85784 0.78103 0.88719 0.88968 0.92693 0.92132 0.82598 0.84830 0.83130 0.83539 0.86402 0.91853 0.87182 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.10 71.98 0.73 -0.99 16 2 C 0.12 1.13 7.23 86.38 0.62 1.75 16 3 N -0.38 -6.18 3.68 -348.06 -1.28 -7.46 16 4 C 0.06 0.91 11.36 83.54 0.95 1.86 16 5 C -0.25 -4.09 5.35 -20.14 -0.11 -4.20 16 6 C -0.02 -0.30 6.08 29.85 0.18 -0.11 16 7 C 0.07 1.43 5.45 71.98 0.39 1.82 16 8 O -0.35 -7.90 10.22 -51.40 -0.53 -8.42 16 9 C 0.47 12.97 7.95 71.24 0.57 13.53 16 10 O -0.54 -20.24 15.78 21.95 0.35 -19.89 16 11 C -0.06 -1.44 5.94 29.10 0.17 -1.26 16 12 C -0.04 -1.28 4.37 -19.88 -0.09 -1.36 16 13 C -0.18 -5.60 9.70 22.30 0.22 -5.39 16 14 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 15 C -0.24 -11.02 9.17 22.39 0.21 -10.81 16 16 C 0.11 5.72 6.65 22.58 0.15 5.87 16 17 O -0.23 -14.54 9.76 -22.74 -0.22 -14.76 16 18 C -0.41 -24.73 9.49 67.92 0.64 -24.09 16 19 H 0.10 5.53 5.21 -2.91 -0.02 5.51 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 21 N -0.92 -57.54 13.67 21.61 0.30 -57.24 16 22 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.19 -8.33 9.65 22.39 0.22 -8.11 16 27 C 0.05 0.82 11.96 85.23 1.02 1.84 16 28 N -0.33 -7.03 12.42 -57.03 -0.71 -7.73 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.12 0.45 8.07 -2.38 -0.02 0.43 16 34 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 38 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 39 H 0.16 2.29 8.09 -2.39 -0.02 2.27 16 40 H 0.13 2.60 8.08 -2.39 -0.02 2.59 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 46 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -85.54 401.18 7.48 -78.06 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.99 Total: 24.71 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 6.56 Total: -33.04 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.69 Total: -72.44 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.40 Total: -43.08 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -85.54 7.48 -78.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810703340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.909 kcal (2) G-P(sol) polarization free energy of solvation -85.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds