Wall clock time and date at job start Wed Apr 1 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.27578 * 2 1 4 4 C 1.50693 * 109.37348 * 119.70541 * 2 1 3 5 5 O 1.21294 * 120.31238 * 335.12993 * 4 2 1 6 6 N 1.35148 * 119.37805 * 155.10638 * 4 2 1 7 7 C 1.40369 * 118.51477 * 359.27609 * 6 4 2 8 8 C 1.38007 * 120.31772 * 161.91014 * 7 6 4 9 9 C 1.39895 * 119.76127 * 180.16954 * 8 7 6 10 10 C 1.47385 * 120.08359 * 179.97438 * 9 8 7 11 11 O 1.21520 * 120.00631 * 0.02562 * 10 9 8 12 12 O 1.34768 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.45192 * 117.00432 * 177.71190 * 12 10 9 14 14 C 1.50705 * 112.84961 * 65.17396 * 13 12 10 15 15 H 1.08002 * 120.00012 * 242.52440 * 14 13 12 16 16 C 1.37885 * 119.99892 * 62.52517 * 14 13 12 17 17 N 1.31513 * 119.99682 * 353.76711 * 16 14 13 18 18 Si 1.86791 * 119.99976 * 173.77031 * 16 14 13 19 19 H 1.48504 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47268 * 119.99981 * 18 16 14 21 21 H 1.48505 * 109.47103 * 239.99757 * 18 16 14 22 22 C 1.53775 * 113.61681 * 293.98056 * 13 12 10 23 23 C 1.53956 * 87.02411 * 220.04837 * 22 13 12 24 24 C 1.53778 * 113.61672 * 196.37233 * 13 12 10 25 25 C 1.39825 * 119.82794 * 0.02562 * 9 8 7 26 26 C 1.37668 * 120.14223 * 359.91047 * 25 9 8 27 27 C 1.39126 * 120.18243 * 0.02562 * 26 25 9 28 28 N 1.39043 * 119.98377 * 180.38591 * 27 26 25 29 29 C 1.46900 * 110.99811 * 91.09317 * 28 27 26 30 30 H 1.09003 * 109.47280 * 300.29752 * 1 2 3 31 31 H 1.08996 * 109.47121 * 60.29256 * 1 2 3 32 32 H 1.09001 * 109.47566 * 180.29690 * 1 2 3 33 33 H 0.96993 * 120.73920 * 179.29513 * 6 4 2 34 34 H 1.07998 * 120.11910 * 0.19795 * 8 7 6 35 35 H 0.96996 * 119.99680 * 185.00835 * 17 16 14 36 36 H 1.09005 * 113.61568 * 334.56647 * 22 13 12 37 37 H 1.08997 * 113.61968 * 105.46627 * 22 13 12 38 38 H 1.09001 * 113.53167 * 270.81164 * 23 22 13 39 39 H 1.08996 * 113.67270 * 139.92811 * 23 22 13 40 40 H 1.09002 * 113.61598 * 254.53235 * 24 13 12 41 41 H 1.08997 * 113.61397 * 25.43104 * 24 13 12 42 42 H 1.07996 * 119.93345 * 179.97438 * 25 9 8 43 43 H 1.08000 * 119.90603 * 179.97438 * 26 25 9 44 44 H 1.08998 * 109.47137 * 185.23829 * 29 28 27 45 45 H 1.09001 * 109.47241 * 305.23971 * 29 28 27 46 46 H 1.09003 * 109.47203 * 65.23798 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8898 1.0289 0.0000 4 6 2.0299 -0.7045 1.2348 5 8 1.3368 -0.7643 2.2284 6 7 3.2576 -1.2694 1.2246 7 6 4.0214 -1.1914 0.0495 8 6 5.3839 -1.4072 0.0886 9 6 6.1344 -1.3231 -1.0890 10 6 7.5900 -1.5516 -1.0553 11 8 8.1398 -1.8139 -0.0038 12 8 8.3115 -1.4697 -2.1907 13 6 9.7467 -1.6561 -2.0747 14 6 10.1225 -3.0477 -1.6351 15 1 10.6420 -3.1969 -0.7001 16 6 9.8030 -4.1306 -2.4267 17 7 9.0649 -3.9638 -3.5023 18 14 10.4186 -5.8343 -1.9713 19 1 11.2232 -5.7534 -0.7258 20 1 9.2601 -6.7378 -1.7550 21 1 11.2625 -6.3662 -3.0715 22 6 10.4493 -0.5466 -1.2746 23 6 11.5818 -0.6245 -2.3147 24 6 10.5329 -1.1642 -3.3014 25 6 5.5001 -1.0206 -2.2979 26 6 4.1404 -0.8077 -2.3307 27 6 3.3908 -0.8918 -1.1617 28 7 2.0165 -0.6840 -1.2010 29 6 1.2987 -1.9481 -1.4123 30 1 -0.3634 0.5185 0.8873 31 1 -0.3633 0.5093 -0.8926 32 1 -0.3634 -1.0276 0.0053 33 1 3.6031 -1.7189 2.0116 34 1 5.8690 -1.6405 1.0248 35 1 8.7794 -4.7336 -4.0187 36 1 9.9142 0.4030 -1.2822 37 1 10.7523 -0.8548 -0.2740 38 1 12.3562 -1.3486 -2.0614 39 1 11.9857 0.3481 -2.5955 40 1 10.9032 -1.9703 -3.9347 41 1 10.0207 -0.3838 -3.8641 42 1 6.0779 -0.9548 -3.2079 43 1 3.6544 -0.5739 -3.2665 44 1 0.2343 -1.7460 -1.5318 45 1 1.6789 -2.4363 -2.3097 46 1 1.4504 -2.6002 -0.5520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:40 Heat of formation + Delta-G solvation = -49.650745 kcal Electronic energy + Delta-G solvation = -30568.906568 eV Core-core repulsion = 26424.811065 eV Total energy + Delta-G solvation = -4144.095503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72494 -39.52437 -38.66271 -37.39949 -36.56991 -35.16464 -34.22269 -32.34090 -31.85705 -30.07554 -29.16308 -27.26996 -26.19306 -24.61435 -24.10978 -23.47497 -22.96602 -22.43999 -20.73267 -18.89625 -18.60049 -18.28759 -17.91852 -17.02381 -16.58636 -15.96013 -15.91842 -15.26263 -15.06244 -14.87704 -14.64961 -14.47408 -14.30899 -13.91789 -13.83446 -13.55562 -13.44635 -12.96270 -12.79165 -12.40353 -12.37243 -12.25377 -11.91268 -11.67785 -11.52618 -11.46102 -11.14988 -11.05563 -10.99262 -10.79805 -10.70394 -10.50120 -10.29838 -9.96642 -9.86596 -9.47494 -9.28225 -8.85849 -8.62918 -8.61265 -8.56536 -8.06503 -6.16322 -4.27885 0.78425 1.21011 2.20345 2.67409 3.17210 3.20978 3.30353 3.36002 3.39133 3.80415 3.99393 4.15049 4.31624 4.45858 4.65609 4.78558 4.97693 5.10474 5.12161 5.26878 5.28046 5.34832 5.38014 5.42407 5.54630 5.61792 5.71139 5.75261 5.77247 5.79624 5.91157 6.04394 6.20112 6.30280 6.39822 6.45034 6.46695 6.55790 6.59948 6.64274 6.75262 6.87710 7.06600 7.09637 7.24181 7.49794 7.68444 7.72863 7.84890 8.26741 8.76093 9.09753 9.42327 10.88018 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002930 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.201590 B = 9555.015962 C = 9890.053875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.068 3.932 3 H 0.121 0.879 4 C 0.490 3.510 5 O -0.522 6.522 6 N -0.662 5.662 7 C 0.104 3.896 8 C -0.085 4.085 9 C -0.077 4.077 10 C 0.503 3.497 11 O -0.505 6.505 12 O -0.335 6.335 13 C 0.241 3.759 14 C -0.515 4.515 15 H 0.069 0.931 16 C 0.077 3.923 17 N -0.859 5.859 18 Si 0.892 3.108 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.160 4.160 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.069 4.069 26 C -0.084 4.084 27 C 0.070 3.930 28 N -0.482 5.482 29 C 0.018 3.982 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.142 0.858 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 7.633 0.591 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 H 0.138 0.862 4 C 0.276 3.724 5 O -0.396 6.396 6 N -0.309 5.309 7 C 0.007 3.993 8 C -0.106 4.106 9 C -0.079 4.079 10 C 0.346 3.654 11 O -0.395 6.395 12 O -0.251 6.251 13 C 0.207 3.793 14 C -0.552 4.552 15 H 0.087 0.913 16 C -0.130 4.130 17 N -0.495 5.495 18 Si 0.719 3.281 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.197 4.197 23 C -0.169 4.169 24 C -0.145 4.145 25 C -0.089 4.089 26 C -0.104 4.104 27 C -0.027 4.027 28 N -0.201 5.201 29 C -0.127 4.127 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.252 0.748 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.143 7.825 0.732 16.180 hybrid contribution 0.760 -1.818 1.372 2.401 sum -13.383 6.007 2.105 14.820 Atomic orbital electron populations 1.21814 0.90585 1.03462 1.03605 1.22003 0.98367 0.99647 0.84305 0.86180 1.21969 0.80593 0.78795 0.91011 1.90748 1.55397 1.58283 1.35169 1.43933 1.16800 1.55771 1.14361 1.18106 0.91415 1.03583 0.86181 1.20733 0.90475 1.00047 0.99318 1.19519 0.92477 1.02385 0.93529 1.20456 0.86738 0.74737 0.83479 1.90742 1.72582 1.43877 1.32330 1.86552 1.25353 1.79691 1.33474 1.21235 0.72251 0.93157 0.92612 1.20995 1.38756 0.89348 1.06068 0.91330 1.25063 0.94352 0.99310 0.94234 1.70028 1.33332 1.30450 1.15738 0.86532 0.78946 0.83917 0.78712 1.19444 1.20901 1.20666 1.23566 0.98192 0.98906 0.99073 1.22570 0.96651 0.99493 0.98236 1.22902 0.95498 0.99208 0.96868 1.21522 0.93929 0.95180 0.98257 1.20772 0.92880 0.99739 0.97010 1.18539 0.88655 1.03520 0.92032 1.59109 1.01993 1.23588 1.35444 1.22642 0.99606 0.88670 1.01829 0.90459 0.90291 0.91656 0.74792 0.84040 0.92751 0.92181 0.91795 0.90215 0.92927 0.90688 0.92184 0.83256 0.84089 0.89672 0.89961 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 7.96 37.16 0.30 -0.79 16 2 C 0.07 0.68 3.05 -69.07 -0.21 0.47 16 3 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.49 6.11 6.87 -10.82 -0.07 6.03 16 5 O -0.52 -7.78 16.97 5.55 0.09 -7.69 16 6 N -0.66 -8.13 5.49 -9.65 -0.05 -8.19 16 7 C 0.10 1.39 6.50 -83.45 -0.54 0.84 16 8 C -0.08 -1.31 9.48 -39.05 -0.37 -1.68 16 9 C -0.08 -1.36 5.88 -104.96 -0.62 -1.98 16 10 C 0.50 11.26 7.45 34.45 0.26 11.52 16 11 O -0.50 -12.46 14.83 -19.28 -0.29 -12.75 16 12 O -0.34 -8.00 8.99 -40.68 -0.37 -8.37 16 13 C 0.24 5.84 0.47 -90.96 -0.04 5.80 16 14 C -0.51 -13.81 7.08 -34.43 -0.24 -14.05 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.08 2.04 5.30 -17.82 -0.09 1.95 16 17 N -0.86 -23.27 12.79 55.43 0.71 -22.56 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.16 -3.41 6.57 -25.83 -0.17 -3.58 16 23 C -0.13 -2.56 7.81 -25.83 -0.20 -2.76 16 24 C -0.11 -2.34 7.28 -25.92 -0.19 -2.53 16 25 C -0.07 -1.04 9.60 -39.20 -0.38 -1.42 16 26 C -0.08 -1.03 9.94 -39.46 -0.39 -1.43 16 27 C 0.07 0.86 4.84 -83.68 -0.41 0.45 16 28 N -0.48 -4.96 4.77 -172.81 -0.82 -5.79 16 29 C 0.02 0.16 8.57 60.06 0.51 0.68 16 30 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 6.35 -51.93 -0.33 0.19 16 33 H 0.41 4.62 8.90 -40.82 -0.36 4.26 16 34 H 0.14 2.18 7.65 -52.49 -0.40 1.78 16 35 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.42 8.08 -51.93 -0.42 1.00 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.76 7.98 -51.93 -0.41 1.35 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.15 2.27 7.59 -52.49 -0.40 1.87 16 43 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.08 0.60 6.19 -51.93 -0.32 0.28 16 45 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 46 H 0.03 0.33 7.58 -51.93 -0.39 -0.07 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -31.17 378.71 -9.28 -40.45 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.38 Total: 5.80 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.86 Total: -2.46 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.17 Total: -36.53 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.56 Total: -28.80 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.17 -9.28 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.196 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds