Wall clock time and date at job start Wed Apr 1 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47576 * 2 1 4 4 C 1.53007 * 109.46709 * 240.00315 * 2 1 3 5 5 C 1.50698 * 109.47195 * 65.00240 * 4 2 1 6 6 C 1.39675 * 119.64511 * 124.99575 * 5 4 2 7 7 N 1.31338 * 120.71083 * 179.97438 * 6 5 4 8 8 C 1.33751 * 119.70859 * 0.02562 * 7 6 5 9 9 C 1.40587 * 121.10423 * 179.97438 * 8 7 6 10 10 C 1.36064 * 119.71289 * 180.02562 * 9 8 7 11 11 C 1.39405 * 120.96925 * 359.97438 * 10 9 8 12 12 C 1.36065 * 120.97117 * 0.02562 * 11 10 9 13 13 C 1.40588 * 119.71285 * 359.97438 * 12 11 10 14 14 N 1.31331 * 119.64504 * 304.97710 * 5 4 2 15 15 C 1.50693 * 109.47171 * 120.00673 * 2 1 3 16 16 O 1.20821 * 120.00464 * 119.99832 * 15 2 1 17 17 O 1.34234 * 119.99610 * 299.99371 * 15 2 1 18 18 C 1.45204 * 116.99817 * 179.97438 * 17 15 2 19 19 C 1.52998 * 109.47092 * 180.02562 * 18 17 15 20 20 O 1.42903 * 109.47157 * 65.00537 * 19 18 17 21 21 C 1.42901 * 114.00258 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.46911 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00030 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99642 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99822 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47277 * 60.00318 * 26 24 22 28 28 H 1.48502 * 109.47160 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47408 * 300.00350 * 26 24 22 30 30 H 1.09000 * 109.46658 * 59.99479 * 1 2 3 31 31 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46719 * 300.00378 * 1 2 3 33 33 H 1.08996 * 109.47015 * 305.00096 * 4 2 1 34 34 H 1.08998 * 109.46592 * 185.00115 * 4 2 1 35 35 H 1.07998 * 119.65064 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.14762 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.51579 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.51680 * 179.72400 * 11 10 9 39 39 H 1.07994 * 120.14569 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47326 * 300.00170 * 18 17 15 41 41 H 1.09003 * 109.46816 * 60.00532 * 18 17 15 42 42 H 1.08997 * 109.47321 * 185.00260 * 19 18 17 43 43 H 1.09000 * 109.47528 * 305.00846 * 19 18 17 44 44 H 1.08996 * 109.46920 * 299.99628 * 21 20 19 45 45 H 1.08998 * 109.46863 * 59.99584 * 21 20 19 46 46 H 0.96998 * 119.99935 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 6 2.6195 0.4529 -3.3917 7 7 2.2954 1.1315 -4.4685 8 6 1.0153 1.4482 -4.6921 9 6 0.6357 2.1741 -5.8347 10 6 -0.6748 2.4814 -6.0339 11 6 -1.6510 2.0864 -5.1205 12 6 -1.3212 1.3827 -4.0036 13 6 0.0225 1.0465 -3.7633 14 7 0.3778 0.3558 -2.6744 15 6 2.0324 -0.7105 1.2303 16 8 2.7270 -1.6929 1.1194 17 8 1.7081 -0.2519 2.4495 18 6 2.2268 -0.9866 3.5895 19 6 1.7549 -0.3200 4.8833 20 8 0.3331 -0.4242 4.9817 21 6 -0.2132 0.1708 6.1606 22 6 -1.7109 0.0036 6.1598 23 1 -2.1969 -0.5063 5.3412 24 6 -2.4605 0.5009 7.2047 25 7 -1.8686 1.1214 8.2017 26 14 -4.3170 0.2944 7.2034 27 1 -4.6543 -1.1515 7.1762 28 1 -4.8847 0.9126 8.4285 29 1 -4.8882 0.9584 6.0042 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7197 -1.2953 34 1 3.1262 -0.7995 -1.2057 35 1 3.6535 0.1982 -3.2120 36 1 1.3809 2.4865 -6.5513 37 1 -0.9629 3.0388 -6.9129 38 1 -2.6838 2.3468 -5.2996 39 1 -2.0883 1.0839 -3.3047 40 1 1.8625 -2.0134 3.5564 41 1 3.3164 -0.9863 3.5567 42 1 2.2155 -0.8171 5.7371 43 1 2.0425 0.7313 4.8763 44 1 0.2066 -0.3157 7.0410 45 1 0.0337 1.2323 6.1796 46 1 -2.3960 1.4715 8.9366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815466898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:04 Heat of formation + Delta-G solvation = -71.472508 kcal Electronic energy + Delta-G solvation = -28406.340712 eV Core-core repulsion = 24261.298946 eV Total energy + Delta-G solvation = -4145.041766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88175 -40.45279 -38.22304 -37.16674 -36.17538 -35.70804 -34.36459 -32.76974 -31.44019 -30.95085 -30.00562 -27.88937 -26.94084 -25.15321 -24.87083 -23.30633 -22.62186 -22.38771 -21.84183 -20.21221 -18.94322 -18.57593 -17.73058 -16.89368 -16.59595 -16.47600 -16.18770 -15.53124 -15.44004 -15.31729 -14.85187 -14.69839 -14.46105 -14.33478 -14.14633 -13.78692 -13.60946 -13.19540 -12.89121 -12.69304 -12.47557 -12.23679 -12.20344 -12.10095 -11.97722 -11.94481 -11.46810 -11.40124 -11.31044 -11.21157 -10.92912 -10.83433 -10.74020 -10.37117 -10.27132 -10.04548 -9.32664 -9.26718 -9.14136 -8.97374 -8.87080 -8.21166 -6.11794 -4.13453 -0.18847 0.14082 1.53886 2.27745 2.35102 2.76956 3.32273 3.34724 3.38795 3.52088 3.61270 3.72418 3.86177 4.26211 4.32441 4.35740 4.48702 4.59614 4.67724 4.72524 4.73378 4.87488 4.90223 4.99940 5.15525 5.24051 5.24680 5.38557 5.42815 5.46755 5.52133 5.59985 5.67306 5.78649 5.86750 5.90992 5.91466 5.97439 6.03483 6.09965 6.25308 6.45899 6.62791 6.89179 7.05381 7.34989 7.39813 7.77843 7.85248 8.12640 8.52617 8.98790 9.51155 10.99703 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.002077 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.339303 B =13476.221158 C =15510.547302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.073 4.073 3 H 0.106 0.894 4 C -0.055 4.055 5 C 0.111 3.889 6 C 0.086 3.914 7 N -0.424 5.424 8 C 0.071 3.929 9 C -0.084 4.084 10 C -0.101 4.101 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.083 3.917 14 N -0.413 5.413 15 C 0.467 3.533 16 O -0.519 6.519 17 O -0.337 6.337 18 C 0.074 3.926 19 C 0.061 3.939 20 O -0.390 6.390 21 C 0.195 3.805 22 C -0.515 4.515 23 H 0.066 0.934 24 C 0.056 3.944 25 N -0.899 5.899 26 Si 0.909 3.091 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 1.606 -28.267 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.093 4.093 3 H 0.124 0.876 4 C -0.093 4.093 5 C -0.044 4.044 6 C -0.090 4.090 7 N -0.137 5.137 8 C -0.053 4.053 9 C -0.103 4.103 10 C -0.121 4.121 11 C -0.119 4.119 12 C -0.102 4.102 13 C -0.042 4.042 14 N -0.128 5.128 15 C 0.310 3.690 16 O -0.408 6.408 17 O -0.252 6.252 18 C 0.000 4.000 19 C -0.016 4.016 20 O -0.310 6.310 21 C 0.120 3.880 22 C -0.553 4.553 23 H 0.084 0.916 24 C -0.145 4.145 25 N -0.538 5.538 26 Si 0.736 3.264 27 H -0.200 1.200 28 H -0.212 1.212 29 H -0.200 1.200 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.193 0.807 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.705 1.422 -28.356 29.419 hybrid contribution -0.568 -0.035 0.537 0.782 sum 7.137 1.387 -27.820 28.754 Atomic orbital electron populations 1.22129 0.90663 1.03713 1.04934 1.20865 0.99798 1.00235 0.88383 0.87645 1.20485 1.02550 0.98592 0.87679 1.22443 0.89669 0.95410 0.96904 1.23937 1.01391 0.93763 0.89863 1.68708 1.17583 1.08991 1.18405 1.19617 0.89727 0.99338 0.96571 1.20807 0.96816 0.97063 0.95624 1.21033 0.92519 0.98929 0.99571 1.21053 1.00374 0.96821 0.93658 1.20888 0.93812 0.97513 0.97939 1.19678 0.95377 0.97318 0.91785 1.68591 1.17993 1.09296 1.16891 1.23578 0.77045 0.82862 0.85513 1.90633 1.36375 1.26175 1.87643 1.86602 1.69145 1.54950 1.14537 1.23222 0.97781 0.96371 0.82618 1.22319 0.86314 0.99515 0.93473 1.87920 1.16353 1.80338 1.46404 1.20232 0.94099 0.92221 0.81407 1.21005 0.90625 1.37053 1.06615 0.91560 1.24950 0.99489 0.95023 0.95066 1.69948 1.36125 1.37894 1.09831 0.86380 0.84066 0.78544 0.77400 1.20007 1.21160 1.19970 0.88253 0.92221 0.91029 0.88135 0.88403 0.80691 0.84389 0.84712 0.84594 0.83986 0.90489 0.90455 0.91986 0.93234 0.97627 0.97516 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.74 37.16 0.32 -1.57 16 2 C -0.07 -0.81 2.82 -91.77 -0.26 -1.07 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.05 -0.50 4.49 -27.88 -0.13 -0.62 16 5 C 0.11 1.05 6.19 -82.27 -0.51 0.54 16 6 C 0.09 0.73 10.83 -17.23 -0.19 0.55 16 7 N -0.42 -4.33 10.46 -10.80 -0.11 -4.44 16 8 C 0.07 0.72 6.59 -84.80 -0.56 0.16 16 9 C -0.08 -0.64 9.99 -39.48 -0.39 -1.03 16 10 C -0.10 -0.58 9.95 -39.93 -0.40 -0.98 16 11 C -0.10 -0.60 9.95 -39.93 -0.40 -1.00 16 12 C -0.08 -0.67 9.99 -39.48 -0.39 -1.07 16 13 C 0.08 0.85 6.59 -84.80 -0.56 0.29 16 14 N -0.41 -4.43 7.13 -7.06 -0.05 -4.48 16 15 C 0.47 6.67 7.25 36.00 0.26 6.93 16 16 O -0.52 -8.10 15.67 -18.75 -0.29 -8.39 16 17 O -0.34 -5.59 10.09 -42.03 -0.42 -6.01 16 18 C 0.07 1.17 5.84 37.16 0.22 1.38 16 19 C 0.06 1.13 6.33 37.16 0.24 1.36 16 20 O -0.39 -9.48 10.30 -38.79 -0.40 -9.88 16 21 C 0.19 5.33 5.69 36.01 0.20 5.54 16 22 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 23 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 25 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 26 Si 0.91 21.88 29.54 -169.99 -5.02 16.85 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 30 H 0.10 1.14 5.19 -51.93 -0.27 0.87 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.55 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.72 7.68 -51.93 -0.40 0.33 16 35 H 0.18 0.91 7.94 -52.49 -0.42 0.49 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 41 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -35.11 394.47 -9.13 -44.24 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.55 Total: -3.13 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.96 Total: -4.60 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.57 Total: -35.03 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.12 Total: -24.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.11 -9.13 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815466898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.236 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds