Wall clock time and date at job start Wed Apr 1 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47576 * 2 1 4 4 C 1.53007 * 109.46709 * 240.00315 * 2 1 3 5 5 C 1.50698 * 109.47195 * 65.00240 * 4 2 1 6 6 C 1.39675 * 119.64511 * 124.99575 * 5 4 2 7 7 N 1.31338 * 120.71083 * 179.97438 * 6 5 4 8 8 C 1.33751 * 119.70859 * 0.02562 * 7 6 5 9 9 C 1.40587 * 121.10423 * 179.97438 * 8 7 6 10 10 C 1.36064 * 119.71289 * 180.02562 * 9 8 7 11 11 C 1.39405 * 120.96925 * 359.97438 * 10 9 8 12 12 C 1.36065 * 120.97117 * 0.02562 * 11 10 9 13 13 C 1.40588 * 119.71285 * 359.97438 * 12 11 10 14 14 N 1.31331 * 119.64504 * 304.97710 * 5 4 2 15 15 C 1.50693 * 109.47171 * 120.00673 * 2 1 3 16 16 O 1.20821 * 120.00464 * 119.99832 * 15 2 1 17 17 O 1.34234 * 119.99610 * 299.99371 * 15 2 1 18 18 C 1.45204 * 116.99817 * 179.97438 * 17 15 2 19 19 C 1.52998 * 109.47092 * 180.02562 * 18 17 15 20 20 O 1.42903 * 109.47157 * 65.00537 * 19 18 17 21 21 C 1.42901 * 114.00258 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.46911 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00030 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99642 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99822 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47277 * 60.00318 * 26 24 22 28 28 H 1.48502 * 109.47160 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47408 * 300.00350 * 26 24 22 30 30 H 1.09000 * 109.46658 * 59.99479 * 1 2 3 31 31 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46719 * 300.00378 * 1 2 3 33 33 H 1.08996 * 109.47015 * 305.00096 * 4 2 1 34 34 H 1.08998 * 109.46592 * 185.00115 * 4 2 1 35 35 H 1.07998 * 119.65064 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.14762 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.51579 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.51680 * 179.72400 * 11 10 9 39 39 H 1.07994 * 120.14569 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47326 * 300.00170 * 18 17 15 41 41 H 1.09003 * 109.46816 * 60.00532 * 18 17 15 42 42 H 1.08997 * 109.47321 * 185.00260 * 19 18 17 43 43 H 1.09000 * 109.47528 * 305.00846 * 19 18 17 44 44 H 1.08996 * 109.46920 * 299.99628 * 21 20 19 45 45 H 1.08998 * 109.46863 * 59.99584 * 21 20 19 46 46 H 0.96998 * 119.99935 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 6 2.6195 0.4529 -3.3917 7 7 2.2954 1.1315 -4.4685 8 6 1.0153 1.4482 -4.6921 9 6 0.6357 2.1741 -5.8347 10 6 -0.6748 2.4814 -6.0339 11 6 -1.6510 2.0864 -5.1205 12 6 -1.3212 1.3827 -4.0036 13 6 0.0225 1.0465 -3.7633 14 7 0.3778 0.3558 -2.6744 15 6 2.0324 -0.7105 1.2303 16 8 2.7270 -1.6929 1.1194 17 8 1.7081 -0.2519 2.4495 18 6 2.2268 -0.9866 3.5895 19 6 1.7549 -0.3200 4.8833 20 8 0.3331 -0.4242 4.9817 21 6 -0.2132 0.1708 6.1606 22 6 -1.7109 0.0036 6.1598 23 1 -2.1969 -0.5063 5.3412 24 6 -2.4605 0.5009 7.2047 25 7 -1.8686 1.1214 8.2017 26 14 -4.3170 0.2944 7.2034 27 1 -4.6543 -1.1515 7.1762 28 1 -4.8847 0.9126 8.4285 29 1 -4.8882 0.9584 6.0042 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7197 -1.2953 34 1 3.1262 -0.7995 -1.2057 35 1 3.6535 0.1982 -3.2120 36 1 1.3809 2.4865 -6.5513 37 1 -0.9629 3.0388 -6.9129 38 1 -2.6838 2.3468 -5.2996 39 1 -2.0883 1.0839 -3.3047 40 1 1.8625 -2.0134 3.5564 41 1 3.3164 -0.9863 3.5567 42 1 2.2155 -0.8171 5.7371 43 1 2.0425 0.7313 4.8763 44 1 0.2066 -0.3157 7.0410 45 1 0.0337 1.2323 6.1796 46 1 -2.3960 1.4715 8.9366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815466898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:03 Heat of formation + Delta-G solvation = -92.390323 kcal Electronic energy + Delta-G solvation = -28407.247776 eV Core-core repulsion = 24261.298946 eV Total energy + Delta-G solvation = -4145.948830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53366 -41.61168 -38.98026 -38.63799 -37.54156 -36.55834 -35.14557 -34.94349 -32.23219 -31.60002 -31.38222 -29.05524 -28.61371 -25.96096 -25.71598 -24.58719 -24.15827 -23.23758 -23.10186 -21.26181 -19.53784 -19.21785 -18.80619 -18.68524 -17.96693 -17.71623 -17.22956 -17.01520 -16.45934 -16.28624 -16.12362 -15.92603 -15.45860 -15.39388 -15.13872 -14.83085 -14.53412 -14.39222 -14.00193 -13.89781 -13.70353 -13.53391 -13.18152 -12.93715 -12.85229 -12.74412 -12.70957 -12.69301 -12.63458 -12.47632 -12.26327 -12.18591 -12.11066 -11.95088 -11.71319 -11.38115 -11.29612 -10.89444 -10.27748 -10.03181 -9.87216 -9.55541 -8.32728 -6.44878 -0.79289 -0.47553 0.90755 1.13078 1.39750 1.44393 1.52794 1.60435 1.85504 2.34035 2.87116 2.97998 3.01007 3.06481 3.14701 3.22397 3.49891 3.62393 3.83777 3.86749 3.93485 3.96389 4.08482 4.11248 4.20773 4.25260 4.32833 4.41433 4.42660 4.50864 4.67422 4.71876 4.76361 4.84816 4.90869 4.93200 5.02023 5.03928 5.16835 5.18866 5.20532 5.38762 5.39479 5.51470 5.53576 5.76665 5.94497 6.24006 6.49236 6.67778 6.68939 6.78999 7.26464 8.79178 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.002077 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.339303 B =13476.221158 C =15510.547302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 H 0.120 0.880 4 C -0.045 4.045 5 C 0.104 3.896 6 C 0.086 3.914 7 N -0.442 5.442 8 C 0.051 3.949 9 C -0.099 4.099 10 C -0.089 4.089 11 C -0.089 4.089 12 C -0.104 4.104 13 C 0.058 3.942 14 N -0.433 5.433 15 C 0.468 3.532 16 O -0.531 6.531 17 O -0.358 6.358 18 C 0.077 3.923 19 C 0.052 3.948 20 O -0.409 6.409 21 C 0.208 3.792 22 C -0.550 4.550 23 H 0.059 0.941 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.982 3.018 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.266 1.266 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.207 0.793 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.055 0.945 44 H -0.008 1.008 45 H -0.011 1.011 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 2.040 -29.992 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 H 0.138 0.862 4 C -0.083 4.083 5 C -0.051 4.051 6 C -0.090 4.090 7 N -0.156 5.156 8 C -0.073 4.073 9 C -0.118 4.118 10 C -0.108 4.108 11 C -0.108 4.108 12 C -0.123 4.123 13 C -0.066 4.066 14 N -0.149 5.149 15 C 0.312 3.688 16 O -0.421 6.421 17 O -0.274 6.274 18 C 0.004 3.996 19 C -0.024 4.024 20 O -0.329 6.329 21 C 0.133 3.867 22 C -0.588 4.588 23 H 0.078 0.922 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.805 3.195 27 H -0.191 1.191 28 H -0.198 1.198 29 H -0.191 1.191 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.223 0.777 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.007 0.993 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.179 1.854 -30.099 30.999 hybrid contribution -0.357 -0.140 0.999 1.070 sum 6.822 1.713 -29.100 29.938 Atomic orbital electron populations 1.22056 0.91569 1.02992 1.04182 1.20928 0.98878 1.01022 0.87818 0.86196 1.20433 1.03671 0.97806 0.86431 1.22500 0.89679 0.95751 0.97210 1.24382 1.02559 0.92915 0.89095 1.68748 1.17859 1.09837 1.19137 1.19988 0.89792 1.00037 0.97468 1.21082 0.98131 0.97280 0.95318 1.21459 0.91581 0.97638 1.00159 1.21455 1.02005 0.94963 0.92419 1.21089 0.93185 0.98779 0.99232 1.19984 0.96418 0.98098 0.92053 1.68504 1.18824 1.09884 1.17642 1.24106 0.76563 0.82724 0.85394 1.90619 1.37064 1.26743 1.87670 1.86600 1.69790 1.55530 1.15489 1.23202 0.99501 0.95422 0.81485 1.22659 0.83237 1.00661 0.95865 1.87865 1.20049 1.80055 1.44943 1.19865 0.93660 0.91061 0.82092 1.21343 0.92012 1.38228 1.07198 0.92239 1.25945 1.04995 0.94021 0.94226 1.70049 1.38325 1.38032 1.10347 0.85252 0.77245 0.79002 0.78040 1.19066 1.19847 1.19065 0.87549 0.92944 0.93132 0.88795 0.86308 0.77668 0.83234 0.81271 0.81600 0.83838 0.91095 0.87081 0.90036 0.92629 0.98985 0.99334 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.74 71.98 0.63 -3.11 16 2 C -0.07 -1.47 2.82 -11.54 -0.03 -1.50 16 3 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.05 -0.78 4.49 29.85 0.13 -0.65 16 5 C 0.10 1.92 6.19 42.98 0.27 2.19 16 6 C 0.09 1.39 10.83 85.11 0.92 2.32 16 7 N -0.44 -8.83 10.46 -188.09 -1.97 -10.80 16 8 C 0.05 1.01 6.59 40.30 0.27 1.27 16 9 C -0.10 -1.38 9.99 22.34 0.22 -1.16 16 10 C -0.09 -0.80 9.95 22.04 0.22 -0.58 16 11 C -0.09 -0.89 9.95 22.05 0.22 -0.67 16 12 C -0.10 -1.65 9.99 22.34 0.22 -1.43 16 13 C 0.06 1.21 6.59 40.30 0.27 1.47 16 14 N -0.43 -9.42 7.13 -176.25 -1.26 -10.67 16 15 C 0.47 13.17 7.25 71.23 0.52 13.68 16 16 O -0.53 -16.09 15.67 21.98 0.34 -15.74 16 17 O -0.36 -11.84 10.09 -48.81 -0.49 -12.34 16 18 C 0.08 2.40 5.84 71.98 0.42 2.82 16 19 C 0.05 1.92 6.33 71.98 0.46 2.38 16 20 O -0.41 -20.32 10.30 -145.58 -1.50 -21.82 16 21 C 0.21 11.75 5.69 71.24 0.41 12.16 16 22 C -0.55 -33.15 9.43 25.60 0.24 -32.91 16 23 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 24 C 0.01 0.40 5.46 84.66 0.46 0.86 16 25 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 26 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.11 2.52 5.19 -2.39 -0.01 2.50 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.12 1.55 7.68 -2.39 -0.02 1.53 16 35 H 0.21 1.75 7.94 -2.91 -0.02 1.73 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 38 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 41 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 42 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.00 394.47 4.26 -72.73 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.99 Total: 10.38 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.84 Total: -2.88 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.94 Total: -76.97 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.65 Total: -49.90 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.00 4.26 -72.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815466898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.656 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds