Wall clock time and date at job start Wed Apr 1 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 O 1.20822 * 120.00115 * 240.00222 * 4 2 1 6 6 O 1.34234 * 119.99749 * 60.00375 * 4 2 1 7 7 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 8 8 C 1.46894 * 111.00031 * 58.95655 * 7 2 1 9 9 C 1.46899 * 111.00129 * 294.99907 * 7 2 1 10 10 C 1.50701 * 109.47188 * 190.00234 * 9 7 2 11 11 O 1.21407 * 119.99633 * 0.02562 * 10 9 7 12 12 C 1.41726 * 120.00307 * 180.02562 * 10 9 7 13 13 C 1.37863 * 126.90977 * 0.02562 * 12 10 9 14 14 N 1.34671 * 109.61768 * 179.97438 * 13 12 10 15 15 C 1.46498 * 124.64049 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47543 * 264.97459 * 15 14 13 17 17 H 1.08010 * 119.99680 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00577 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99859 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00452 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47256 * 89.99767 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99824 * 20 18 16 23 23 H 1.48498 * 109.46951 * 329.99991 * 20 18 16 24 24 C 1.38019 * 110.71329 * 0.02562 * 14 13 12 25 25 C 1.39137 * 133.04212 * 180.02562 * 24 14 13 26 26 C 1.37770 * 119.95127 * 179.97438 * 25 24 14 27 27 C 1.38730 * 120.63622 * 0.02562 * 26 25 24 28 28 C 1.37801 * 120.26441 * 0.02562 * 27 26 25 29 29 C 1.39185 * 119.67638 * 359.64944 * 28 27 26 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 0.96696 * 116.99726 * 179.97438 * 6 4 2 34 34 H 1.09005 * 109.47571 * 59.99527 * 8 7 2 35 35 H 1.09003 * 109.47095 * 179.97438 * 8 7 2 36 36 H 1.09001 * 109.47459 * 299.99874 * 8 7 2 37 37 H 1.09001 * 109.47260 * 309.99901 * 9 7 2 38 38 H 1.09000 * 109.47053 * 70.00599 * 9 7 2 39 39 H 1.08003 * 125.18619 * 359.96703 * 13 12 10 40 40 H 1.08998 * 109.47361 * 24.97872 * 15 14 13 41 41 H 1.09004 * 109.46742 * 144.97856 * 15 14 13 42 42 H 0.96994 * 120.00033 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.02237 * 359.97438 * 25 24 14 44 44 H 1.08001 * 119.68627 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.86953 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.16029 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7082 -0.2518 -2.4496 7 7 2.0196 -0.6925 1.1995 8 6 1.5283 -2.0760 1.2460 9 6 1.6486 0.0392 2.4181 10 6 2.3678 -0.5571 3.6006 11 8 3.1168 -1.4995 3.4434 12 6 2.1697 -0.0177 4.8962 13 6 1.3572 1.0429 5.2361 14 7 1.4301 1.2612 6.5630 15 6 0.6974 2.3106 7.2758 16 6 1.5758 3.5264 7.4214 17 1 2.5795 3.5183 7.0224 18 6 1.0984 4.6490 8.0638 19 7 -0.1235 4.6586 8.5502 20 14 2.1870 6.1563 8.2436 21 1 1.9944 7.0486 7.0724 22 1 1.8233 6.8843 9.4857 23 1 3.6089 5.7341 8.3157 24 6 2.2896 0.3608 7.1594 25 6 2.7000 0.1680 8.4748 26 6 3.5907 -0.8386 8.7769 27 6 4.0865 -1.6666 7.7803 28 6 3.6927 -1.4906 6.4715 29 6 2.7881 -0.4817 6.1537 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.0542 -0.7406 -3.2088 34 1 1.8762 -2.6151 0.3648 35 1 1.9059 -2.5657 2.1436 36 1 0.4384 -2.0742 1.2639 37 1 1.9297 1.0870 2.3125 38 1 0.5722 -0.0345 2.5726 39 1 0.7544 1.6120 4.5438 40 1 -0.1981 2.5746 6.7134 41 1 0.4125 1.9479 8.2635 42 1 -0.4595 5.4485 9.0018 43 1 2.3205 0.8071 9.2584 44 1 3.9067 -0.9842 9.7993 45 1 4.7839 -2.4521 8.0311 46 1 4.0801 -2.1359 5.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817772380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:38 Heat of formation + Delta-G solvation = -52.491062 kcal Electronic energy + Delta-G solvation = -29671.251401 eV Core-core repulsion = 25527.032733 eV Total energy + Delta-G solvation = -4144.218668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07036 -40.73236 -38.95640 -37.08795 -36.66963 -36.10090 -33.64733 -31.98096 -31.29011 -29.74484 -29.41146 -27.96296 -26.92833 -26.06288 -24.27320 -23.38568 -22.53977 -21.59938 -20.42082 -20.27040 -18.60141 -18.20109 -17.05458 -16.85996 -16.70476 -16.09349 -15.89070 -15.48090 -15.37084 -15.12266 -14.70276 -14.48975 -14.34202 -14.01523 -13.85879 -13.53717 -13.38964 -13.32648 -13.10666 -12.59019 -12.46391 -12.43608 -12.21025 -11.97467 -11.80956 -11.66353 -11.45978 -11.41203 -11.33980 -11.20458 -10.95471 -10.92311 -10.60373 -10.38752 -10.28189 -9.81602 -9.18113 -9.03846 -8.82386 -8.39341 -7.77498 -7.16962 -6.43600 -4.54482 1.32965 1.95624 2.01011 2.34877 2.60772 3.09947 3.17803 3.21790 3.50738 3.66094 3.71528 4.15082 4.42217 4.48483 4.66017 4.74011 4.89884 4.90121 5.09491 5.15762 5.23858 5.26284 5.32772 5.40711 5.46339 5.50229 5.54253 5.62871 5.70136 5.79956 5.97442 6.06032 6.12495 6.14564 6.30920 6.40714 6.48543 6.55172 6.74639 6.81010 6.84715 6.92010 7.03977 7.17240 7.32363 7.47601 7.65025 7.71736 7.75643 7.80902 8.23694 8.52938 9.14765 10.62757 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002969 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.242138 B = 9428.967934 C =11433.737027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.122 0.878 4 C 0.482 3.518 5 O -0.492 6.492 6 O -0.519 6.519 7 N -0.508 5.508 8 C 0.002 3.998 9 C 0.009 3.991 10 C 0.431 3.569 11 O -0.466 6.466 12 C -0.311 4.311 13 C 0.153 3.847 14 N -0.423 5.423 15 C 0.227 3.773 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.069 3.931 19 N -0.888 5.888 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.084 3.916 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.143 4.143 28 C -0.082 4.082 29 C -0.057 4.057 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.173 0.827 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.270 0.730 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -7.967 -13.323 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.140 0.860 4 C 0.323 3.677 5 O -0.378 6.378 6 O -0.331 6.331 7 N -0.232 5.232 8 C -0.145 4.145 9 C -0.119 4.119 10 C 0.312 3.688 11 O -0.344 6.344 12 C -0.320 4.320 13 C 0.011 3.989 14 N -0.096 5.096 15 C 0.109 3.891 16 C -0.585 4.585 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.020 4.020 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.162 4.162 28 C -0.101 4.101 29 C -0.061 4.061 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.268 0.732 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.040 0.960 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.190 0.810 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.231 -8.162 -12.719 15.114 hybrid contribution -0.318 0.964 -0.248 1.045 sum -0.549 -7.199 -12.967 14.841 Atomic orbital electron populations 1.22439 0.94327 1.03542 1.04265 1.21291 0.94773 0.99017 0.86939 0.85988 1.23250 0.77293 0.82677 0.84457 1.90695 1.34709 1.25722 1.86652 1.84512 1.72455 1.59310 1.16794 1.61717 1.59299 1.02813 0.99352 1.22884 0.96706 0.88999 1.05960 1.22561 0.99606 0.99836 0.89915 1.19663 0.79674 0.82404 0.87015 1.90477 1.31739 1.25093 1.87100 1.19559 1.12225 1.06030 0.94197 1.22517 0.96336 0.94673 0.85400 1.44598 1.33484 1.25287 1.06272 1.19940 0.92099 0.83826 0.93246 1.21297 1.00606 0.97404 1.39202 0.91463 1.24936 0.95288 0.98947 0.94381 1.69910 1.15639 1.30249 1.36740 0.86352 0.80717 0.81786 0.77920 1.20180 1.20781 1.19485 1.18317 0.96425 0.92954 0.94349 1.20196 0.99242 0.99148 0.93478 1.20707 0.98407 0.96009 0.98984 1.20863 1.01905 1.00628 0.92785 1.20497 0.96446 0.97007 0.96139 1.18826 0.98884 0.96945 0.91410 0.91531 0.90451 0.90466 0.73166 0.89403 0.89201 0.95988 0.87508 0.91295 0.80975 0.92960 0.93161 0.92058 0.85795 0.86266 0.86561 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 8.43 37.16 0.31 -1.10 16 2 C 0.09 0.87 2.87 -68.86 -0.20 0.67 16 3 H 0.12 1.00 8.03 -51.93 -0.42 0.58 16 4 C 0.48 5.07 7.35 36.00 0.26 5.34 16 5 O -0.49 -6.89 14.66 -18.75 -0.27 -7.16 16 6 O -0.52 -3.82 13.33 -39.27 -0.52 -4.34 16 7 N -0.51 -6.45 4.28 -237.73 -1.02 -7.46 16 8 C 0.00 0.02 8.39 60.06 0.50 0.53 16 9 C 0.01 0.10 4.17 -4.98 -0.02 0.08 16 10 C 0.43 6.94 6.64 -32.98 -0.22 6.72 16 11 O -0.47 -8.79 13.97 5.45 0.08 -8.71 16 12 C -0.31 -5.41 6.11 -104.88 -0.64 -6.06 16 13 C 0.15 2.55 10.71 -16.44 -0.18 2.37 16 14 N -0.42 -8.38 2.70 -115.29 -0.31 -8.69 16 15 C 0.23 5.04 5.68 -5.20 -0.03 5.01 16 16 C -0.55 -13.58 9.39 -34.44 -0.32 -13.91 16 17 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -23.23 13.29 55.43 0.74 -22.50 16 20 Si 0.91 19.75 29.54 -169.99 -5.02 14.73 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 C 0.08 1.68 6.78 -83.95 -0.57 1.11 16 25 C -0.10 -1.87 9.96 -39.42 -0.39 -2.26 16 26 C -0.12 -1.95 10.01 -39.57 -0.40 -2.34 16 27 C -0.14 -2.25 10.03 -39.56 -0.40 -2.65 16 28 C -0.08 -1.46 9.80 -39.39 -0.39 -1.85 16 29 C -0.06 -1.10 6.24 -104.93 -0.65 -1.75 16 30 H 0.07 0.54 6.39 -51.93 -0.33 0.20 16 31 H 0.08 0.53 6.75 -51.93 -0.35 0.18 16 32 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.41 1.38 9.10 45.56 0.41 1.80 16 34 H 0.09 1.22 5.45 -51.93 -0.28 0.94 16 35 H 0.09 1.36 5.82 -51.93 -0.30 1.06 16 36 H 0.02 0.24 6.28 -51.93 -0.33 -0.08 16 37 H 0.11 1.09 8.00 -51.93 -0.42 0.67 16 38 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 39 H 0.17 2.20 7.91 -52.48 -0.42 1.78 16 40 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 2.16 7.38 -52.48 -0.39 1.77 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -31.81 383.80 -9.22 -41.03 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.25 Total: 5.77 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.42 Total: -8.45 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.59 Total: -38.64 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.72 Total: -20.22 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.81 -9.22 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817772380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.464 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds