Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 O 1.20822 * 120.00115 * 240.00222 * 4 2 1 6 6 O 1.34234 * 119.99749 * 60.00375 * 4 2 1 7 7 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 8 8 C 1.46894 * 111.00031 * 58.95655 * 7 2 1 9 9 C 1.46899 * 111.00129 * 294.99907 * 7 2 1 10 10 C 1.50701 * 109.47188 * 190.00234 * 9 7 2 11 11 O 1.21407 * 119.99633 * 0.02562 * 10 9 7 12 12 C 1.41726 * 120.00307 * 180.02562 * 10 9 7 13 13 C 1.37863 * 126.90977 * 0.02562 * 12 10 9 14 14 N 1.34671 * 109.61768 * 179.97438 * 13 12 10 15 15 C 1.46498 * 124.64049 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47543 * 264.97459 * 15 14 13 17 17 H 1.08010 * 119.99680 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00577 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99859 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00452 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47256 * 89.99767 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99824 * 20 18 16 23 23 H 1.48498 * 109.46951 * 329.99991 * 20 18 16 24 24 C 1.38019 * 110.71329 * 0.02562 * 14 13 12 25 25 C 1.39137 * 133.04212 * 180.02562 * 24 14 13 26 26 C 1.37770 * 119.95127 * 179.97438 * 25 24 14 27 27 C 1.38730 * 120.63622 * 0.02562 * 26 25 24 28 28 C 1.37801 * 120.26441 * 0.02562 * 27 26 25 29 29 C 1.39185 * 119.67638 * 359.64944 * 28 27 26 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 0.96696 * 116.99726 * 179.97438 * 6 4 2 34 34 H 1.09005 * 109.47571 * 59.99527 * 8 7 2 35 35 H 1.09003 * 109.47095 * 179.97438 * 8 7 2 36 36 H 1.09001 * 109.47459 * 299.99874 * 8 7 2 37 37 H 1.09001 * 109.47260 * 309.99901 * 9 7 2 38 38 H 1.09000 * 109.47053 * 70.00599 * 9 7 2 39 39 H 1.08003 * 125.18619 * 359.96703 * 13 12 10 40 40 H 1.08998 * 109.47361 * 24.97872 * 15 14 13 41 41 H 1.09004 * 109.46742 * 144.97856 * 15 14 13 42 42 H 0.96994 * 120.00033 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.02237 * 359.97438 * 25 24 14 44 44 H 1.08001 * 119.68627 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.86953 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.16029 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7082 -0.2518 -2.4496 7 7 2.0196 -0.6925 1.1995 8 6 1.5283 -2.0760 1.2460 9 6 1.6486 0.0392 2.4181 10 6 2.3678 -0.5571 3.6006 11 8 3.1168 -1.4995 3.4434 12 6 2.1697 -0.0177 4.8962 13 6 1.3572 1.0429 5.2361 14 7 1.4301 1.2612 6.5630 15 6 0.6974 2.3106 7.2758 16 6 1.5758 3.5264 7.4214 17 1 2.5795 3.5183 7.0224 18 6 1.0984 4.6490 8.0638 19 7 -0.1235 4.6586 8.5502 20 14 2.1870 6.1563 8.2436 21 1 1.9944 7.0486 7.0724 22 1 1.8233 6.8843 9.4857 23 1 3.6089 5.7341 8.3157 24 6 2.2896 0.3608 7.1594 25 6 2.7000 0.1680 8.4748 26 6 3.5907 -0.8386 8.7769 27 6 4.0865 -1.6666 7.7803 28 6 3.6927 -1.4906 6.4715 29 6 2.7881 -0.4817 6.1537 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.0542 -0.7406 -3.2088 34 1 1.8762 -2.6151 0.3648 35 1 1.9059 -2.5657 2.1436 36 1 0.4384 -2.0742 1.2639 37 1 1.9297 1.0870 2.3125 38 1 0.5722 -0.0345 2.5726 39 1 0.7544 1.6120 4.5438 40 1 -0.1981 2.5746 6.7134 41 1 0.4125 1.9479 8.2635 42 1 -0.4595 5.4485 9.0018 43 1 2.3205 0.8071 9.2584 44 1 3.9067 -0.9842 9.7993 45 1 4.7839 -2.4521 8.0311 46 1 4.0801 -2.1359 5.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817772380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = -71.771606 kcal Electronic energy + Delta-G solvation = -29672.087469 eV Core-core repulsion = 25527.032733 eV Total energy + Delta-G solvation = -4145.054735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42284 -41.57420 -40.08957 -38.06922 -38.00720 -36.91014 -35.43348 -33.52091 -32.13804 -31.20623 -30.60341 -29.37755 -28.28270 -26.84507 -25.62822 -24.71045 -23.82321 -22.84062 -21.85635 -21.12512 -19.82809 -18.98935 -18.82853 -18.11028 -17.69749 -17.28001 -17.04729 -16.58404 -16.42617 -16.35653 -16.19379 -15.68356 -15.53430 -15.32793 -14.89999 -14.77132 -14.69130 -14.37194 -14.31942 -14.11660 -13.57285 -13.43945 -13.29354 -13.19908 -13.05963 -12.93092 -12.71513 -12.52734 -12.45887 -12.38966 -12.36563 -12.31001 -12.16211 -11.77249 -11.56680 -11.24573 -10.74354 -10.47696 -10.40274 -9.28677 -9.16068 -8.62624 -8.29897 -6.51547 0.00430 0.60733 0.98834 1.23508 1.38042 1.41269 1.50547 1.91529 2.04975 2.33066 2.39243 2.85327 2.97260 3.04796 3.44640 3.80202 3.87024 3.97361 4.06567 4.14855 4.20369 4.26916 4.30024 4.35123 4.43937 4.55347 4.61469 4.64930 4.72238 4.75574 4.78358 4.85092 4.90516 4.93430 5.03112 5.17132 5.22513 5.24680 5.54077 5.57156 5.68362 5.68932 5.78756 5.78945 5.92263 5.93899 5.97658 6.28169 6.35767 6.62661 7.00414 7.06319 7.21144 8.71188 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002969 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.242138 B = 9428.967934 C =11433.737027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.142 0.858 4 C 0.486 3.514 5 O -0.536 6.536 6 O -0.508 6.508 7 N -0.531 5.531 8 C 0.011 3.989 9 C 0.016 3.984 10 C 0.430 3.570 11 O -0.500 6.500 12 C -0.319 4.319 13 C 0.159 3.841 14 N -0.439 5.439 15 C 0.243 3.757 16 C -0.555 4.555 17 H 0.053 0.947 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.275 1.275 24 C 0.057 3.943 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.134 4.134 28 C -0.097 4.097 29 C -0.082 4.082 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.427 0.573 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.213 0.787 40 H 0.054 0.946 41 H 0.028 0.972 42 H 0.273 0.727 43 H 0.114 0.886 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -7.012 -14.389 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.022 4.022 3 H 0.160 0.840 4 C 0.329 3.671 5 O -0.425 6.425 6 O -0.321 6.321 7 N -0.256 5.256 8 C -0.137 4.137 9 C -0.111 4.111 10 C 0.313 3.687 11 O -0.381 6.381 12 C -0.328 4.328 13 C 0.020 3.980 14 N -0.114 5.114 15 C 0.125 3.875 16 C -0.593 4.593 17 H 0.072 0.928 18 C -0.173 4.173 19 N -0.553 5.553 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.200 1.200 24 C -0.047 4.047 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.153 4.153 28 C -0.116 4.116 29 C -0.086 4.086 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.289 0.711 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.229 0.771 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.132 0.868 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.462 -7.203 -13.829 15.599 hybrid contribution -0.199 0.582 0.042 0.617 sum -0.661 -6.621 -13.787 15.308 Atomic orbital electron populations 1.22406 0.92349 1.03499 1.05608 1.21435 0.96250 0.99240 0.85274 0.84025 1.23472 0.76292 0.81888 0.85463 1.90692 1.36806 1.27665 1.87333 1.84467 1.71941 1.59105 1.16605 1.61579 1.60585 1.02785 1.00635 1.22682 0.97671 0.89424 1.03890 1.22519 1.00407 1.00304 0.87883 1.20172 0.79101 0.81609 0.87793 1.90470 1.33371 1.26599 1.87628 1.19858 1.12157 1.06230 0.94544 1.23115 0.95937 0.94349 0.84647 1.44465 1.34254 1.25368 1.07316 1.19511 0.91878 0.83594 0.92564 1.21453 1.00284 0.98556 1.39038 0.92831 1.25618 0.96316 1.01332 0.94076 1.69983 1.16854 1.31051 1.37441 0.85477 0.78716 0.78913 0.78187 1.19177 1.20395 1.20021 1.18648 0.97256 0.93637 0.95170 1.20383 1.00667 1.00402 0.93030 1.21085 0.96809 0.94540 1.00700 1.21253 1.01465 1.00812 0.91764 1.20676 0.96719 0.96996 0.97183 1.19227 0.99608 0.97459 0.92283 0.92230 0.89216 0.89003 0.71091 0.90676 0.91944 0.94055 0.85069 0.88571 0.77062 0.92833 0.95353 0.91826 0.86765 0.82984 0.83110 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.43 71.98 0.61 -1.53 16 2 C 0.09 1.47 2.87 44.17 0.13 1.60 16 3 H 0.14 1.83 8.03 -2.39 -0.02 1.81 16 4 C 0.49 9.49 7.35 71.23 0.52 10.01 16 5 O -0.54 -14.92 14.66 21.98 0.32 -14.59 16 6 O -0.51 -6.31 13.33 -51.45 -0.69 -7.00 16 7 N -0.53 -12.71 4.28 -906.03 -3.87 -16.58 16 8 C 0.01 0.28 8.39 127.69 1.07 1.35 16 9 C 0.02 0.35 4.17 85.56 0.36 0.71 16 10 C 0.43 13.60 6.64 26.55 0.18 13.78 16 11 O -0.50 -19.21 13.97 -3.43 -0.05 -19.25 16 12 C -0.32 -11.00 6.11 -20.03 -0.12 -11.12 16 13 C 0.16 5.16 10.71 84.17 0.90 6.06 16 14 N -0.44 -17.52 2.70 -518.65 -1.40 -18.93 16 15 C 0.24 10.98 5.68 85.63 0.49 11.46 16 16 C -0.56 -27.74 9.39 25.60 0.24 -27.50 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 18 C 0.03 1.42 5.46 84.65 0.46 1.88 16 19 N -0.92 -47.86 13.29 21.45 0.28 -47.58 16 20 Si 0.96 40.11 29.54 68.60 2.03 42.13 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 24 C 0.06 2.31 6.78 38.90 0.26 2.57 16 25 C -0.12 -4.70 9.96 22.37 0.22 -4.48 16 26 C -0.11 -3.47 10.01 22.28 0.22 -3.24 16 27 C -0.13 -4.05 10.03 22.28 0.22 -3.83 16 28 C -0.10 -3.46 9.80 22.39 0.22 -3.24 16 29 C -0.08 -3.19 6.24 -20.06 -0.13 -3.32 16 30 H 0.06 0.80 6.39 -2.39 -0.02 0.79 16 31 H 0.09 0.87 6.75 -2.39 -0.02 0.85 16 32 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 33 H 0.43 2.02 9.10 -74.06 -0.67 1.34 16 34 H 0.07 2.13 5.45 -2.38 -0.01 2.12 16 35 H 0.06 1.94 5.82 -2.39 -0.01 1.93 16 36 H 0.04 0.86 6.28 -2.39 -0.01 0.85 16 37 H 0.13 2.22 8.00 -2.39 -0.02 2.20 16 38 H 0.10 1.58 6.94 -2.39 -0.02 1.56 16 39 H 0.21 4.81 7.91 -2.91 -0.02 4.78 16 40 H 0.05 2.38 8.10 -2.39 -0.02 2.36 16 41 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.27 13.47 8.31 -92.71 -0.77 12.69 16 43 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 44 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 45 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 46 H 0.12 4.32 7.38 -2.91 -0.02 4.30 16 Total: -1.00 -71.08 383.80 2.83 -68.25 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.35 Total: 22.40 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 5.86 Total: -8.85 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -4.99 Total: -83.08 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.41 Total: -40.84 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -71.08 2.83 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817772380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.525 kcal (2) G-P(sol) polarization free energy of solvation -71.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds