Wall clock time and date at job start Wed Apr 1 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46802 * 2 1 4 4 C 1.46501 * 120.00045 * 269.99983 * 3 2 1 5 5 C 1.53001 * 109.47236 * 270.00121 * 4 3 2 6 6 C 1.38910 * 120.00279 * 89.99900 * 3 2 1 7 7 C 1.39722 * 119.76973 * 0.02562 * 6 3 2 8 8 C 1.36140 * 120.37402 * 180.23517 * 7 6 3 9 9 C 1.40575 * 119.98093 * 359.49611 * 8 7 6 10 10 C 1.41377 * 120.09388 * 180.25428 * 9 8 7 11 11 C 1.38695 * 118.75398 * 180.24499 * 10 9 8 12 12 C 1.47132 * 120.59318 * 180.02562 * 11 10 9 13 13 O 1.21639 * 120.00580 * 180.02562 * 12 11 10 14 14 N 1.34782 * 119.99904 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00096 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00158 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99640 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00207 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46866 * 120.00241 * 20 18 16 23 23 H 1.48493 * 109.47381 * 240.00273 * 20 18 16 24 24 C 1.46605 * 118.82170 * 359.97438 * 11 10 9 25 25 O 1.21694 * 119.93611 * 179.97438 * 24 11 10 26 26 O 1.34371 * 120.13195 * 0.02562 * 24 11 10 27 27 C 1.35072 * 121.42168 * 359.95548 * 26 24 11 28 28 C 1.38661 * 119.79975 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46979 * 299.99901 * 1 2 3 31 31 H 1.08998 * 109.47344 * 60.00257 * 1 2 3 32 32 H 1.08993 * 109.47373 * 240.00282 * 2 1 3 33 33 H 1.09006 * 109.47190 * 119.99460 * 2 1 3 34 34 H 1.09001 * 109.46890 * 30.00157 * 4 3 2 35 35 H 1.08994 * 109.47473 * 149.99508 * 4 3 2 36 36 H 1.08990 * 109.47376 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47210 * 299.99840 * 5 4 3 38 38 H 1.09003 * 109.47136 * 59.99346 * 5 4 3 39 39 H 1.08002 * 119.81092 * 359.95112 * 7 6 3 40 40 H 1.08001 * 120.01266 * 179.71692 * 8 7 6 41 41 H 1.08002 * 120.62335 * 0.26510 * 10 9 8 42 42 H 0.97005 * 119.99589 * 0.02562 * 14 12 11 43 43 H 1.08993 * 109.46956 * 300.00206 * 15 14 12 44 44 H 1.08997 * 109.47008 * 60.00327 * 15 14 12 45 45 H 0.96999 * 119.99911 * 179.97438 * 19 18 16 46 46 H 1.07993 * 120.02361 * 0.04289 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2498 2.0362 1.2030 7 6 2.0158 1.3728 2.4102 8 6 2.2340 2.0045 3.5963 9 6 2.7073 3.3281 3.6106 10 6 2.9398 3.9845 4.8410 11 6 3.4020 5.2921 4.8227 12 6 3.6580 6.0134 6.0792 13 8 4.0628 7.1602 6.0507 14 7 3.4441 5.4036 7.2620 15 6 3.6995 6.1217 8.5131 16 6 3.3842 5.2232 9.6813 17 1 3.0294 4.2179 9.5089 18 6 3.5497 5.6845 10.9700 19 7 3.9822 6.9086 11.1799 20 14 3.1581 4.5712 12.4180 21 1 2.6915 3.2533 11.9172 22 1 4.3792 4.3830 13.2420 23 1 2.0931 5.1919 13.2459 24 6 3.6319 5.9424 3.5290 25 8 4.0368 7.0893 3.4893 26 8 3.3955 5.2749 2.3870 27 6 2.9458 4.0013 2.3960 28 6 2.7136 3.3440 1.1974 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1385 36 1 3.8890 2.3450 -2.6545 37 1 4.3883 2.2157 -0.9508 38 1 3.8745 0.7623 -1.8407 39 1 1.6555 0.3547 2.4024 40 1 2.0469 1.4877 4.5260 41 1 2.7612 3.4772 5.7776 42 1 3.1216 4.4890 7.2847 43 1 4.7478 6.4170 8.5550 44 1 3.0697 7.0101 8.5573 45 1 4.0982 7.2332 12.0866 46 1 2.8928 3.8498 0.2602 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830672272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:21 Heat of formation + Delta-G solvation = -57.977012 kcal Electronic energy + Delta-G solvation = -29138.990106 eV Core-core repulsion = 24994.533549 eV Total energy + Delta-G solvation = -4144.456557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79804 -39.94560 -38.68574 -37.76260 -36.58375 -34.36978 -33.99260 -33.08848 -32.24157 -31.00508 -30.55656 -28.48816 -27.10428 -25.03967 -24.66765 -24.00294 -22.93758 -22.63910 -21.75910 -20.26283 -18.96375 -18.43406 -17.60824 -17.19911 -16.65965 -16.46332 -16.09589 -15.70786 -15.33549 -15.09884 -14.90947 -14.59722 -14.31643 -14.24135 -14.17160 -14.12367 -13.71038 -13.35780 -13.24698 -13.04470 -12.91048 -12.64550 -12.37019 -12.24730 -12.21240 -11.93638 -11.85409 -11.74859 -11.57341 -11.28109 -11.06683 -10.94371 -10.88697 -10.31242 -10.18967 -9.41539 -9.36402 -9.04323 -8.97450 -8.72421 -7.89575 -7.57934 -6.14668 -4.21878 0.04080 0.92780 1.54782 2.17477 2.60963 2.63724 3.24424 3.30877 3.33847 3.41830 3.81970 4.05171 4.15590 4.21137 4.26744 4.38028 4.39255 4.52053 4.54215 4.61117 4.77268 4.77867 4.80642 4.85932 4.90085 5.10267 5.15377 5.21334 5.27928 5.31349 5.39110 5.44519 5.48877 5.61707 5.63882 5.69412 5.74861 5.97274 6.04637 6.10528 6.63605 6.84216 7.20807 7.36465 7.44419 7.55821 7.64512 7.67942 7.98559 8.61879 8.80430 9.12095 9.44445 10.95570 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002306 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.533327 B =12139.435763 C =13673.729617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 N -0.612 5.612 4 C 0.110 3.890 5 C -0.174 4.174 6 C 0.279 3.721 7 C -0.219 4.219 8 C 0.003 3.997 9 C -0.218 4.218 10 C 0.039 3.961 11 C -0.260 4.260 12 C 0.551 3.449 13 O -0.525 6.525 14 N -0.708 5.708 15 C 0.250 3.750 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.883 5.883 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.520 3.480 25 O -0.419 6.419 26 O -0.273 6.273 27 C 0.213 3.787 28 C -0.236 4.236 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.386 0.614 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -20.675 -26.917 34.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.009 4.009 3 N -0.319 5.319 4 C -0.012 4.012 5 C -0.233 4.233 6 C 0.173 3.827 7 C -0.240 4.240 8 C -0.016 4.016 9 C -0.221 4.221 10 C 0.019 3.981 11 C -0.265 4.265 12 C 0.335 3.665 13 O -0.402 6.402 14 N -0.358 5.358 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.364 3.636 25 O -0.302 6.302 26 O -0.184 6.184 27 C 0.166 3.834 28 C -0.259 4.259 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.220 0.780 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.779 -19.103 -27.141 33.875 hybrid contribution -0.379 -1.072 0.948 1.480 sum -7.158 -20.175 -26.193 33.828 Atomic orbital electron populations 1.22243 0.95791 1.02386 1.02873 1.21542 0.94389 0.81735 1.03280 1.46715 1.68710 1.13403 1.03056 1.21563 0.96858 0.98205 0.84607 1.22228 0.96826 1.02272 1.01935 1.17618 0.89008 0.89857 0.86222 1.20459 1.11346 1.01613 0.90624 1.20846 0.90865 0.91365 0.98520 1.17885 1.14879 0.97348 0.91986 1.22274 0.86053 0.92027 0.97755 1.22558 1.12699 0.96339 0.94946 1.17376 0.79894 0.86497 0.82685 1.90844 1.45420 1.16970 1.87003 1.46342 1.65937 1.16964 1.06530 1.19157 0.97369 0.92611 0.77849 1.21231 1.46607 0.99641 0.90624 0.91853 1.24961 0.94808 0.95272 0.99033 1.69990 1.44656 1.15810 1.21617 0.86356 0.78073 0.80377 0.82042 1.19661 1.20816 1.20811 1.20115 0.76868 0.85493 0.81113 1.91040 1.40181 1.14283 1.84646 1.83697 1.71269 1.24733 1.38740 1.18782 0.90374 0.80710 0.93550 1.19813 1.14817 0.94537 0.96758 0.91436 0.91906 0.92372 0.90368 0.90041 0.90353 0.89988 0.91385 0.91867 0.92414 0.84775 0.84033 0.83089 0.78044 0.95250 0.95240 0.92466 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.24 37.16 0.38 -0.18 16 2 C 0.11 0.37 5.86 -4.04 -0.02 0.35 16 3 N -0.61 -3.22 2.59 -171.78 -0.44 -3.67 16 4 C 0.11 0.47 5.85 -4.04 -0.02 0.44 16 5 C -0.17 -0.74 10.24 37.16 0.38 -0.36 16 6 C 0.28 2.09 6.55 -83.91 -0.55 1.54 16 7 C -0.22 -1.48 9.12 -39.78 -0.36 -1.84 16 8 C 0.00 0.02 9.71 -39.45 -0.38 -0.36 16 9 C -0.22 -2.43 5.74 -106.81 -0.61 -3.04 16 10 C 0.04 0.50 9.35 -38.22 -0.36 0.14 16 11 C -0.26 -4.65 6.05 -102.75 -0.62 -5.27 16 12 C 0.55 12.45 7.76 -12.65 -0.10 12.35 16 13 O -0.52 -14.47 15.45 -15.62 -0.24 -14.71 16 14 N -0.71 -15.50 5.50 -62.66 -0.34 -15.84 16 15 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 16 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -26.26 13.29 55.43 0.74 -25.52 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.52 9.88 8.13 34.11 0.28 10.16 16 25 O -0.42 -9.70 16.30 -26.47 -0.43 -10.13 16 26 O -0.27 -4.24 9.80 -21.28 -0.21 -4.45 16 27 C 0.21 2.61 6.74 -38.42 -0.26 2.35 16 28 C -0.24 -2.23 9.11 -39.23 -0.36 -2.59 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 33 H 0.08 0.23 6.15 -51.93 -0.32 -0.09 16 34 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 35 H 0.08 0.38 6.16 -51.93 -0.32 0.06 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.13 0.60 6.09 -52.49 -0.32 0.28 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.15 1.52 6.46 -52.49 -0.34 1.18 16 42 H 0.39 6.89 6.39 -40.82 -0.26 6.63 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.14 1.18 6.08 -52.49 -0.32 0.86 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -37.25 386.97 -9.23 -46.49 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.06 Total: -0.81 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.06 Total: 7.09 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.05 Total: -45.04 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.88 Total: -29.30 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.25 -9.23 -46.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830672272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.491 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds